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  Chromosome 1 - Genetic Maps - Single Contig
 

Chromosome 1 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_004612
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004612AC0966392038835031        
S/G/Y/R/B/O NT_004612AC0117002039644873AFMA157TG51237.901233.951AC096639, AC096639
S/G/Y/R/B/O NT_004612AL6065372041013313        
S/G/Y/R/B/O NT_004612AL5922872041351663        
S/G/Y/R/B/O NT_004612AC0136242043225531        
S/G/Y/R/B/O NT_004612AL5901372043458491        
S/G/Y/R/B/O NT_004612AL6038382043773713AFM199WH21237.201232.811AL590137, AL590137, AL603838
S/G/Y/R/B/O NT_004612AL5922162044052973        
S/G/Y/R/B/O NT_004612AL4453052045687962AFM205XD81237.201232.811 AL445305
S/G/Y/R/B/O NT_004612AL4453052045923912AFM088YB31235.801233.381AC044820, AC044820, AL445305
S/G/Y/R/B/O NT_004612AL4456662046667463        
S/G/Y/R/B/O NT_004612AC0448202047244131        
S/G/Y/R/B/O NT_004612AC1144962047284931        
S/G/Y/R/B/O NT_004612AC0185902047566921        
S/G/Y/R/B/O NT_004612AC0995632047896091        
S/G/Y/R/B/O NT_004612AL5838302049882793        
S/G/Y/R/B/O NT_004612AC0189712050187431GATA87F04  1233.381AC099675, AL583830, AC018971, AC099675, AL583830
S/G/Y/R/B/O NT_004612AC0996752050337091        
S/G/Y/R/B/O NT_004612AC0928042052687223AFMA125ZG51237.901233.951 AC092804
S/G/Y/R/B/O NT_004612AL4509902053275483        
S/G/Y/R/B/O NT_004612AL4511632055003113AFM286YC11237.901233.951 AC066596, AL451163
S/G/Y/R/B/O NT_004612AL3653152055152043        
S/G/Y/R/B/O NT_004612AC0927992056542223        
S/G/Y/R/B/O NT_004612AL5133052057623833        
S/G/Y/R/B/O NT_004612AL3584522058299053        
S/G/Y/R/B/O NT_004612AL1392592059068913        
S/G/Y/R/B/O NT_004612AC0935812059622543AFM297XC11238.501234.521 AC012248, AC093581
S/G/Y/R/B/O NT_004612AL1389342060883721        
S/G/Y/R/B/O NT_004612AL1387822061027911        
S/G/Y/R/B/O NT_004612AC0212092061088841        
S/G/Y/R/B/O NT_004612AC0374632063326451        
S/G/Y/R/B/O NT_004612AL5920632063394393        
S/G/Y/R/B/O NT_004612AL5906122064978343        
S/G/Y/R/B/O NT_004612AL5924022065016143        
S/G/Y/R/B/O NT_004612AC0118802067018931        
S/G/Y/R/B/O NT_004612AL5838262067036333        
S/G/Y/R/B/O NT_004612AL5124492068238411        
S/G/Y/R/B/O NT_004612AL6458602069985313        
S/G/Y/R/B/O NT_004612AL5924492070227783        
S/G/Y/R/B/O NT_004612AC1043332071487501AFMA303WH51235.801231.671 AC104333
S/G/Y/R/B/O NT_004612AC1043332071900641AFM156XG71235.801231.111 AC104333, AL590124
S/G/Y/R/B/O NT_004612AL5916472072210102        
S/G/Y/R/B/O NT_004612AL4510772072397933        
S/G/Y/R/B/O NT_004612AL5906482073893883        
S/G/Y/R/B/O NT_004612AL6069132074674473GATA63B11  1231.501 AL513471
S/G/Y/R/B/O NT_004612AC0928032074974673        
S/G/Y/R/B/O NT_004612AL3600912076205341AFMA127WB51235.801231.671AC092803, AC024541, AC092803, AL360091, AL513471
S/G/Y/R/B/O NT_004612AL4503522077019033        
S/G/Y/R/B/O NT_004612AL1574022079759683GATA48B01  1212.441 AL157402
S/G/Y/R/B/O NT_004612AL1574022079850603AFM165XC9  1212.441 AL157402


  NT_004612 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004612AL1574022079850603AFM165XC91216.50  1 AL157402
S/G/Y/R/B/O NT_004612AL3559882080589951        
S/G/Y/R/B/O NT_004612AL1363212080645023        
S/G/Y/R/B/O NT_004612AC0966312082343701        
S/G/Y/R/B/O NT_004612AC0262402082789871        
S/G/Y/R/B/O NT_004612AC0117782082832751        
S/G/Y/R/B/O NT_004612AC0229892084774761AFMB277YF5  1212.441AC105941, AC022989, AC105941
S/G/Y/R/B/O NT_004612AC0229892084774761AFMB277YF51216.50  1AC105941, AC022989, AC105941
S/G/Y/R/B/O NT_004612AC1059412083404611        
S/G/Y/R/B/O NT_004612AC0996732086248231AFM337XD5  1214.081AC012200, AC012200, AC099673
S/G/Y/R/B/O NT_004612AC0996732086248231AFM337XD51218.20  1AC012200, AC012200, AC099673
S/G/Y/R/B/O NT_004612AC0996732086480811GATA181C01  1214.081AC012200, AC012200
S/G/Y/R/B/O NT_004612AC0122002086046571        
S/G/Y/R/B/O NT_004612AC0993352086863331        
S/G/Y/R/B/O NT_004612AL3588582087157903        
S/G/Y/R/B/O NT_004612AL4456502088096463        
S/G/Y/R/B/O NT_004612AL5126502089632513        
S/G/Y/R/B/O NT_004612AL5133122090185683        
S/G/Y/R/B/O NT_004612AC0966352090962453        
S/G/Y/R/B/O NT_004612AL6037522092675013        
S/G/Y/R/B/O NT_004612AL5126262093674973AFM196XH41241.601237.731 AL512626
S/G/Y/R/B/O NT_004612AC0966342094244923AFM309YD11241.601237.731 AC096634
S/G/Y/R/B/O NT_004612AC0966342095683473AFM184YF61242.501238.521 AC096634
S/G/Y/R/B/O NT_004612AC0966342095804973UT5111  1239.661AL391216, AC096634, AL391216
S/G/Y/R/B/O NT_004612AL3912162095811533        
S/G/Y/R/B/O NT_004612AL4996092097539143AFMA043ZG11242.401238.521 AC025988, AL499609
S/G/Y/R/B/O NT_004612AL4996092098009093UT1243  1239.661 AL499609
S/G/Y/R/B/O NT_004612AC0966412098152103        
S/G/Y/R/B/O NT_004612AL3546592099983613        
S/G/Y/R/B/O NT_004612AC0970612101314213        
S/G/Y/R/B/O NT_004612AL4454282102664223        
S/G/Y/R/B/O NT_004612AL5914142103556633        
S/G/Y/R/B/O NT_004612AL3579752103669273        
S/G/Y/R/B/O NT_004612AL3555262104261251        
S/G/Y/R/B/O NT_004612AC0245052105332461        
S/G/Y/R/B/O NT_004612AC0920182107006783UT1591  1214.081 AC092018
S/G/Y/R/B/O NT_004612AC0920182107011333ATA4D06  1214.081 AC092018
S/G/Y/R/B/O NT_004612AL4502442107331643        
S/G/Y/R/B/O NT_004612AL5906742108213053AFM353TD5  1214.081AL596266, AL590674, AL596266
S/G/Y/R/B/O NT_004612AL5906742108213053AFM353TD51218.10  1AL596266, AL590674, AL596266
S/G/Y/R/B/O NT_004612AL5962662109283213        
S/G/Y/R/B/O NT_004612AL4456872109434643        
S/G/Y/R/B/O NT_004612AL5916702111095723        
S/G/Y/R/B/O NT_004612AC0966332112462833AFMC025XH5  1214.081 AC096633, AL513362
S/G/Y/R/B/O NT_004612AC0966332112462833AFMC025XH51218.20  1 AC096633, AL513362
S/G/Y/R/B/O NT_004612AC0966332112835533AFMA116WG1  1214.081 AC096633
S/G/Y/R/B/O NT_004612AC0966332112835533AFMA116WG11218.20  1 AC096633
S/G/Y/R/B/O NT_004612AL5901262113238913        
S/G/Y/R/B/O NT_004612AC0970652114236363UT492  1214.081 AC097065
S/G/Y/R/B/O NT_004612AC1044612115409323        


  NT_004612 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004612AL3598342116169813        
S/G/Y/R/B/O NT_004612AL4454832116852283        
S/G/Y/R/B/O NT_004612AL4501042118472283        
S/G/Y/R/B/O NT_004612AC0997562120020073        
S/G/Y/R/B/O NT_004612AL3584732121234733        
S/G/Y/R/B/O NT_004612AL1391592144826231AFMB055ZH5  1215.171 AL139159
S/G/Y/R/B/O NT_004612AL1391592144826231AFMB055ZH51219.20  1 AL139159
S/G/Y/R/B/O NT_004612AL1391592145579521AFMB002YA5  1214.631 AL139159
S/G/Y/R/B/O NT_004612AL1391592145579521AFMB002YA51218.70  1 AL139159
S/G/Y/R/B/O NT_004612AC1044632122069771        
S/G/Y/R/B/O NT_004612AL3590962122815901        
S/G/Y/R/B/O NT_004612AC0535222123161021        
S/G/Y/R/B/O NT_004612AC0159732123384443AFM291VF1  1216.821AC053522, AL359096, AC015973, AC053522, AL359096
S/G/Y/R/B/O NT_004612AC0159732123384443AFM291VF11221.00  1AC053522, AL359096, AC015973, AC053522, AL359096
S/G/Y/R/B/O NT_004612AC0159732123604153AFMA190XD5  1216.821AC053522, AC015973, AC053522
S/G/Y/R/B/O NT_004612AC0159732123604153AFMA190XD51221.10  1AC053522, AC015973, AC053522
S/G/Y/R/B/O NT_004612AC0993362123679983GATA25A11  1215.991AC015973, AL359096, AC015973, AL359096
S/G/Y/R/B/O NT_004612AL5897622125244783        
S/G/Y/R/B/O NT_004612AL3569532127418013AFMA044ZH1  1216.821 AL356953
S/G/Y/R/B/O NT_004612AL3569532127418013AFMA044ZH11220.80  1 AL356953
S/G/Y/R/B/O NT_004612AL5923002127719213        
S/G/Y/R/B/O NT_004612AL6914822128399751        
S/G/Y/R/B/O NT_004612AC0996762129791221AFMA109ZH9  1215.171 AC099676
S/G/Y/R/B/O NT_004612AC0996762129791221AFMA109ZH91219.20  1 AC099676
S/G/Y/R/B/O NT_004612AC0996762129794391UT995  1215.991 AC099676
S/G/Y/R/B/O NT_004612AL5132172130445803        
S/G/Y/R/B/O NT_004612AL6455042130661223        
S/G/Y/R/B/O NT_004612AC0928002131502423        
S/G/Y/R/B/O NT_004612AL5127882133176473        
S/G/Y/R/B/O NT_004612AJ2519732133297833AFMB317XC9  1215.991AC096677, AC096677, AJ251973, AL157898
S/G/Y/R/B/O NT_004612AJ2519732133297833AFMB317XC91220.00  1AC096677, AC096677, AJ251973, AL157898
S/G/Y/R/B/O NT_004612AC0966772135111993AFM238XD10  1215.171AC083954, AC083954, AC096677
S/G/Y/R/B/O NT_004612AC0966772135111993AFM238XD101219.20  1AC083954, AC083954, AC096677
S/G/Y/R/B/O NT_004612AC0966772135253023AFM136XA7  1215.171AC083954, AC083954, AC096677
S/G/Y/R/B/O NT_004612AC0966772135253023AFM136XA71219.20  1AC083954, AC083954, AC096677
S/G/Y/R/B/O NT_004612AC0839542135453361        
S/G/Y/R/B/O NT_004612AC0993372136370271AFMA115YC91242.501238.521 AC099337
S/G/Y/R/B/O NT_004612AC0966382137545213        
S/G/Y/R/B/O NT_004612AC0920152139403053        
S/G/Y/R/B/O NT_004612AC0228002140887731        
S/G/Y/R/B/O NT_004612AL6064682140971553        
S/G/Y/R/B/O NT_004612AL4510602142038133        
S/G/Y/R/B/O NT_004612AL3907902143403191        
S/G/Y/R/B/O NT_004612AC1039252143403311        
S/G/Y/R/B/O NT_004612Z982662143653923AFM289YE9  1215.171AC073202, AC103925, AC073202, AC103925, Z98266
S/G/Y/R/B/O NT_004612Z982662143653923AFM289YE91219.20  1AC073202, AC103925, AC073202, AC103925, Z98266
S/G/Y/R/B/O NT_004612AC0732022144249241        
S/G/Y/R/B/O NT_004612 - UT5429  1214.080AC097065, AC097065
S/G/Y/R/B/O NT_004612 - AFMA275ZC5  1216.460  
S/G/Y/R/B/O NT_004612 - AFMB314WF9  1216.821AL359837, AL359837


  NT_004612 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004612 - AFMA272XD9  1216.821AC105940, AL451082, AC105940, AL451082
S/G/Y/R/B/O NT_004612 - AFMB002ZG5  1218.461AC073251, AL592146, AC073251, AL592146
S/G/Y/R/B/O NT_004612 - AFMA224XC1  1218.461 AF149301
S/G/Y/R/B/O NT_004612 - AFMA132YC9  1218.461AL513343, AL513343
S/G/Y/R/B/O NT_004612 - AFMA123YF1  1218.461 AL355486
S/G/Y/R/B/O NT_004612 - GGAA23C07  1218.461AC096676, AL513343, AC096676, AL390207, AL513343
S/G/Y/R/B/O NT_004612 - AFMB334ZB1  1219.921AC018373, AL583832, AC018373, AL583832
S/G/Y/R/B/O NT_004612 - AFM312YB5  1219.921AC096645, AC096645
S/G/Y/R/B/O NT_004612 - AFM234WF6  1220.651AL359702, AL359702
S/G/Y/R/B/O NT_004612 - AFMA052ZD5  1220.651AC096675, AC096675
S/G/Y/R/B/O NT_004612 - AFM024XF8  1220.651AL357131, AL357131
S/G/Y/R/B/O NT_004612 - AFMA133ZD5  1222.841AL161736, AL161736
S/G/Y/R/B/O NT_004612 - AFMA290XD1  1222.841AL035091, AL035091
S/G/Y/R/B/O NT_004612 - AFMB046YC9  1222.841AC098935, AC023534, AC068122, AC098935
S/G/Y/R/B/O NT_004612 - AFMB347YA5  1222.841AL137789, AL137789
S/G/Y/R/B/O NT_004612 - AFMB334YA9  1222.841AL513315, AC068122, AL445652, AL445993, AL513315
S/G/Y/R/B/O NT_004612 - AFMA274WA5  1222.841AC084393, AL035209, AL365178, AC084393, AL035209, AL365178
S/G/Y/R/B/O NT_004612 - AFMB032YF1  1222.841 AC023534, AJ005577
S/G/Y/R/B/O NT_004612 - AFM059YH4  1222.841AL137789, AL137789, AL160003
S/G/Y/R/B/O NT_004612 - AFMA082WF9  1224.501AC016454, AL606753, AL662918, AC016454, AL606753, AL662918
S/G/Y/R/B/O NT_004612 - GATA50F12  1226.161AC093421, AC093421, AL391220
S/G/Y/R/B/O NT_004612 - AFM281YG1  1227.811AL023754, AL023754
S/G/Y/R/B/O NT_004612 - AFM224XC1  1227.811AL035408, AL035408
S/G/Y/R/B/O NT_004612 - AFM310VB1  1227.811AL023754, AL023754
S/G/Y/R/B/O NT_004612 - AFM108YA3  1229.131AL022399, AL022399
S/G/Y/R/B/O NT_004612 - AFM179XG5  1231.111AC099755, AC099755
S/G/Y/R/B/O NT_004612 - AFMC011YD5  1231.111AC092017, AL611964, AC092017, AL611964
S/G/Y/R/B/O NT_004612 - AFM278XE5  1231.111AC096636, AL691441, AC096636, AL691441
S/G/Y/R/B/O NT_004612 - AFMB342YG1  1231.111AC092814, AL445488, AC092814, AL445488
S/G/Y/R/B/O NT_004612 - AFM203ZB6  1231.111AL445488, AL445488