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Chromosome 1 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_028054
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_028054AL68381251699101        
S/G/Y/R/B/O NT_028054Z9763552065273GATA23G09  114.591AL683812, AL683812, Z97635
S/G/Y/R/B/O NT_028054Z9805253216923AFMA210XG9116.90114.591 Z98052
S/G/Y/R/B/O NT_028054Z9798754058733AFMA295YH5117.40115.131 Z97987
S/G/Y/R/B/O NT_028054Z9798755068643GATA4H04  115.131 AL034378, Z97987
S/G/Y/R/B/O NT_028054Z9798755188633AFMA222ZE9118.10116.221 AL034378, Z97987
S/G/Y/R/B/O NT_028054AL36519455559683        
S/G/Y/R/B/O NT_028054AL15771656715023AFMA128YE9118.10116.221AC073482, AC073482, AL157716
S/G/Y/R/B/O NT_028054AC07348256799271        
S/G/Y/R/B/O NT_028054AL59621056860911        
S/G/Y/R/B/O NT_028054Z9888458481193        
S/G/Y/R/B/O NT_028054AL00918360108463        
S/G/Y/R/B/O NT_028054AL03441761831153GGAA3A07  116.221AC025225, AL672201, AC025225, AL034417, AL512402, AL672201
S/G/Y/R/B/O NT_028054AC02522561987731        
S/G/Y/R/B/O NT_028054AL67220161996351        
S/G/Y/R/B/O NT_028054AC02055262721213        
S/G/Y/R/B/O NT_028054AL35607264192423        
S/G/Y/R/B/O NT_028054AC01604965288111        
S/G/Y/R/B/O NT_028054AL09685565350091        
S/G/Y/R/B/O NT_028054AL51233066243763        
S/G/Y/R/B/O NT_028054AL59012867626122AFM147YF8116.40114.041 AL391218, AL590128
S/G/Y/R/B/O NT_028054AL59116368742472AFMA152XG5116.40114.591AL590128, AL590128, AL591163
S/G/Y/R/B/O NT_028054AL15917769558823        
S/G/Y/R/B/O NT_028054AL03144770231763AFMB039ZG9116.40114.041 AC062024, AL031447
S/G/Y/R/B/O NT_028054AL59186670593293        
S/G/Y/R/B/O NT_028054AL15821771618681        
S/G/Y/R/B/O NT_028054AL03184872121653        
S/G/Y/R/B/O NT_028054AL03184773652533AFM254WB9116.40114.591 AL031847
S/G/Y/R/B/O NT_028054AL03184774350513AFMA052WG1116.40114.041 AL031847
S/G/Y/R/B/O NT_028054AL03540676473193AFMA131YA5114.20111.871 AC026968, AL035406
S/G/Y/R/B/O NT_028054AL35626176811993        
S/G/Y/R/B/O NT_028054AL35669377815011        
S/G/Y/R/B/O NT_028054AL35771379524383UT1962  120.611AC026160, AC026160, AL357713
S/G/Y/R/B/O NT_028054AC02616080247071        
S/G/Y/R/B/O NT_028054AL35755280449451        
S/G/Y/R/B/O NT_028054AL35493081763083        
S/G/Y/R/B/O NT_028054AL13941582047083        
S/G/Y/R/B/O NT_028054AL15804883441361        
S/G/Y/R/B/O NT_028054 - AFM247TE9  120.610