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Chromosome 1 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_029860
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_029860AC0648671063006551        
S/G/Y/R/B/O NT_029860AC1144971063720891AFMB313WD1  1136.881 AC026941, AC114497
S/G/Y/R/B/O NT_029860AC1144971063720891AFMB313WD11140.30  1 AC026941, AC114497
S/G/Y/R/B/O NT_029860AL5907241064312453        
S/G/Y/R/B/O NT_029860AL5906311064563443        
S/G/Y/R/B/O NT_029860AL6720141066080602        
S/G/Y/R/B/O NT_029860AL5896651067066641        
S/G/Y/R/B/O NT_029860AC0193181068086511GATA133A08  1137.591AL589665, AC019318, AC074197, AC096923, AL589665
S/G/Y/R/B/O NT_029860AL5128441068281493        
S/G/Y/R/B/O NT_029860AL4510521069871663        
S/G/Y/R/B/O NT_029860AL5911621070950303        
S/G/Y/R/B/O NT_029860AL3553061070979253        
S/G/Y/R/B/O NT_029860AL6065261072029853        
S/G/Y/R/B/O NT_029860AC1035961074223161AFM205YG31143.101139.021 AC103596
S/G/Y/R/B/O NT_029860AL1624021073976501AFM186XG71143.201139.021 AL162402
S/G/Y/R/B/O NT_029860AC0931191074678663ATA25E07  1139.021AL162402, AL162402, AC093119, AL162402, AL162402
S/G/Y/R/B/O NT_029860AC0931191075798293ATA42G12  1139.021 AC093119
S/G/Y/R/B/O NT_029860AL4996051076591211AFM234VB41143.301139.021 AL499605
S/G/Y/R/B/O NT_029860AL5963271077516193        
S/G/Y/R/B/O NT_029860AL6271691078443563        
S/G/Y/R/B/O NT_029860AL5904531078771563        
S/G/Y/R/B/O NT_029860AL6458581080626173        
S/G/Y/R/B/O NT_029860AC0743761080909861        
S/G/Y/R/B/O NT_029860AL3555391081587731GATA176G01  1140.391AL590427, AL355539, AL355539, AL590427
S/G/Y/R/B/O NT_029860AL5904271081812791        
S/G/Y/R/B/O NT_029860AL6071331082995232        
S/G/Y/R/B/O NT_029860AC0160851084498131        
S/G/Y/R/B/O NT_029860AC1144911084574381        
S/G/Y/R/B/O NT_029860AL5132061086751363        
S/G/Y/R/B/O NT_029860AL5910421087832603        
S/G/Y/R/B/O NT_029860AC0214011089292881        
S/G/Y/R/B/O NT_029860AL3538921089396962        
S/G/Y/R/B/O NT_029860AL3912351089701783        
S/G/Y/R/B/O NT_029860AL3900361090447593        
S/G/Y/R/B/O NT_029860AL3592581092257963        
S/G/Y/R/B/O NT_029860AL3561101094125181        
S/G/Y/R/B/O NT_029860AL6720861094312101        
S/G/Y/R/B/O NT_029860AL3900381094441123        
S/G/Y/R/B/O NT_029860AL3920881095357883AFMB338WD91145.901141.481 AL392088
S/G/Y/R/B/O NT_029860AC0260721095700911        
S/G/Y/R/B/O NT_029860AL1601711095754131        
S/G/Y/R/B/O NT_029860AL3547241097342671        
S/G/Y/R/B/O NT_029860AL5917191097346683        
S/G/Y/R/B/O NT_029860AL4492661098310853        
S/G/Y/R/B/O NT_029860AL3564881100116343        
S/G/Y/R/B/O NT_029860AC0165181100999491        
S/G/Y/R/B/O NT_029860AL4504681101037333        
S/G/Y/R/B/O NT_029860AL1588471102297963AFM164XE11146.601142.241 AL158847
S/G/Y/R/B/O NT_029860AC0000321102771953        
S/G/Y/R/B/O NT_029860AC0000311103325333AFMA184XD51146.701142.241 AC000031, AC011780, M96233


  NT_029860 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_029860AL3553101103393193        
S/G/Y/R/B/O NT_029860AL3551451104010872        
S/G/Y/R/B/O NT_029860AC0733641105039141        
S/G/Y/R/B/O NT_029860AL3567351105152323        
S/G/Y/R/B/O NT_029860AL3902521105731833        
S/G/Y/R/B/O NT_029860AL3563891107912213AFMB352YG91146.001141.481 AL157901, AL356389
S/G/Y/R/B/O NT_029860AL1389331108355393        
S/G/Y/R/B/O NT_029860AC0116451109195831