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Chromosome 1 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_029223
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_029223AL080278568690993AFMA219ZC1187.70185.681 AC027234
S/G/Y/R/B/O NT_029223AL139219569031693        
S/G/Y/R/B/O NT_029223AL390243570493773AFMA082WB5187.70185.681AL355004, AL355004, AL390243
S/G/Y/R/B/O NT_029223AL355004570505193        
S/G/Y/R/B/O NT_029223AL442223570651283        
S/G/Y/R/B/O NT_029223AL359739571178113        
S/G/Y/R/B/O NT_029223AL663085572860953        
S/G/Y/R/B/O NT_029223AL627090573368493UT419  185.681 AL627090
S/G/Y/R/B/O NT_029223AL137855574148903AFM289YC1187.70185.681 AL137855
S/G/Y/R/B/O NT_029223AL109944574556433        
S/G/Y/R/B/O NT_029223AL391826575959162        
S/G/Y/R/B/O NT_029223AL445193577128893AFMA183ZD9188.80186.771 AL139221, AL445193
S/G/Y/R/B/O NT_029223AL365367577288423        
S/G/Y/R/B/O NT_029223AL357373579358262AFMA052WC5188.80186.771AC104464, AC104464, AL357373
S/G/Y/R/B/O NT_029223AC104464579838261UT2271  186.771 AC104464, AL359879
S/G/Y/R/B/O NT_029223AL109845580744453AFMA163TG1189.30187.311 AL109845, AL359879
S/G/Y/R/B/O NT_029223AL365187581451691        
S/G/Y/R/B/O NT_029223AC025008581591711        
S/G/Y/R/B/O NT_029223AC027052582459661        
S/G/Y/R/B/O NT_029223AL035411582890083AFMB292ZG1189.30187.311AC025008, AC025008, AL035411
S/G/Y/R/B/O NT_029223AL035411582919693AFMA300WG9189.30187.311AC025008, AC025008, AL035411
S/G/Y/R/B/O NT_029223AL450024583355703        
S/G/Y/R/B/O NT_029223AL136985584611833AFM162XG3189.30187.311 AL136985
S/G/Y/R/B/O NT_029223AL606762584967863        
S/G/Y/R/B/O NT_029223AC105277585177331        
S/G/Y/R/B/O NT_029223AL713859585559971        
S/G/Y/R/B/O NT_029223AL390234587642203AFM256YH5190.30188.401 AC013610
S/G/Y/R/B/O NT_029223AC069129588205991AFMB361XC5190.30188.401 AC069129
S/G/Y/R/B/O NT_029223AC025793588057771        
S/G/Y/R/B/O NT_029223AC093424588253901        
S/G/Y/R/B/O NT_029223AC016336589753891        
S/G/Y/R/B/O NT_029223AL596322589917643GATA26G09  189.491AC016336, AC025793, AC016336, AC025793, AL596322
S/G/Y/R/B/O NT_029223AC093425589961283AFMB072WG9189.80187.861AC016336, AC025793, AL596322, AC016336, AC025793, AC093425, AL596322
S/G/Y/R/B/O NT_029223AC093425591430973AFM316YB9189.30187.531 AC093425, AL138903
S/G/Y/R/B/O NT_029223AL592431591732063        
S/G/Y/R/B/O NT_029223AC080177592311281        
S/G/Y/R/B/O NT_029223 - AFMA050ZC5  185.680 AL138779, AL157907, AL354883