Home    Genome Browser    BLAT Search    Help
  Chromosome 1 - Genetic Maps - Single Contig
 

Chromosome 1 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_021877
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_021877AC1044651979126221        
S/G/Y/R/B/O NT_021877AL1624061980164841        
S/G/Y/R/B/O NT_021877AC0928101980396893        
S/G/Y/R/B/O NT_021877AL5897411981483803        
S/G/Y/R/B/O NT_021877AL0354081983636033AFM224XC11232.00  1 AL035408
S/G/Y/R/B/O NT_021877AL0354081983636033AFM224XC1  1227.811 AL035408
S/G/Y/R/B/O NT_021877AL0237541984742463AFM281YG11232.00  1 AL023754
S/G/Y/R/B/O NT_021877AL0237541984742463AFM281YG1  1227.811 AL023754
S/G/Y/R/B/O NT_021877AL0237541985001883AFM310VB11232.00  1 AL023754
S/G/Y/R/B/O NT_021877AL0237541985001883AFM310VB1  1227.811 AL023754
S/G/Y/R/B/O NT_021877AL0313161985539473        
S/G/Y/R/B/O NT_021877AL0223981986515473        
S/G/Y/R/B/O NT_021877AL0227281987873753        
S/G/Y/R/B/O NT_021877AL0350461988137993        
S/G/Y/R/B/O NT_021877AL0223991988680143AFM108YA31233.30  1 AL022399
S/G/Y/R/B/O NT_021877AL0223991988680143AFM108YA3  1229.131 AL022399
S/G/Y/R/B/O NT_021877AL0223971989180373        
S/G/Y/R/B/O NT_021877AL5132631990272403        
S/G/Y/R/B/O NT_021877AL0354141991507893        
S/G/Y/R/B/O NT_021877AL0343511992800303        
S/G/Y/R/B/O NT_021877AL5906531994176083        
S/G/Y/R/B/O NT_021877AL1617361996300643AFMA133ZD51227.30  1 AL161736
S/G/Y/R/B/O NT_021877AL1617361996300643AFMA133ZD5  1222.841 AL161736
S/G/Y/R/B/O NT_021877AL3546811996366143        
S/G/Y/R/B/O NT_021877AL5918461997423033        
S/G/Y/R/B/O NT_021877AL5133151999765033AFMB334YA91227.30  1 AC068122, AL445652, AL445993, AL513315
S/G/Y/R/B/O NT_021877AL5133151999765033AFMB334YA9  1222.841 AC068122, AL445652, AL445993, AL513315
S/G/Y/R/B/O NT_021877AC0989352000867963AFMB046YC91227.30  1 AC023534, AC068122, AC098935
S/G/Y/R/B/O NT_021877AC0989352000867963AFMB046YC9  1222.841 AC023534, AC068122, AC098935
S/G/Y/R/B/O NT_021877AL5896722002088003        
S/G/Y/R/B/O NT_021877AL4454932002320203AFMB032YF11227.30  1 AC023534, AJ005577
S/G/Y/R/B/O NT_021877AL4454932002320203AFMB032YF1  1222.841 AC023534, AJ005577
S/G/Y/R/B/O NT_021877AL5962182003677333        
S/G/Y/R/B/O NT_021877AL3915972004966683        
S/G/Y/R/B/O NT_021877AC0319782006357921        
S/G/Y/R/B/O NT_021877AL6914522006407571        
S/G/Y/R/B/O NT_021877AL1377892007158023AFM059YH41227.30  1 AL137789, AL160003
S/G/Y/R/B/O NT_021877AL1377892007158023AFM059YH4  1222.841 AL137789, AL160003
S/G/Y/R/B/O NT_021877AL1377892007531133AFMB347YA51227.30  1 AL137789
S/G/Y/R/B/O NT_021877AL1377892007531133AFMB347YA5  1222.841 AL137789
S/G/Y/R/B/O NT_021877AL3651782008448861        
S/G/Y/R/B/O NT_021877AC0843932008772453        
S/G/Y/R/B/O NT_021877AL0352092009461623AFMA274WA51227.30  1AC084393, AL365178, AC084393, AL035209, AL365178
S/G/Y/R/B/O NT_021877AL0352092009461623AFMA274WA5  1222.841AC084393, AL365178, AC084393, AL035209, AL365178
S/G/Y/R/B/O NT_021877AL0350912009951933AFMA290XD11227.30  1 AL035091
S/G/Y/R/B/O NT_021877AL0350912009951933AFMA290XD1  1222.841 AL035091
S/G/Y/R/B/O NT_021877AL4452542011876983        
S/G/Y/R/B/O NT_021877AC0934212013349193GATA50F12  1226.161 AC093421, AL391220
S/G/Y/R/B/O NT_021877AC0997932013780133        
S/G/Y/R/B/O NT_021877AL4511842015458543        


  NT_021877 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_021877AC0966742015815093        
S/G/Y/R/B/O NT_021877AL6629182017582561        
S/G/Y/R/B/O NT_021877AL6067532018514173AFMA082WF91228.70  1AC016454, AL662918, AC016454, AL606753, AL662918
S/G/Y/R/B/O NT_021877AL6067532018514173AFMA082WF9  1224.501AC016454, AL662918, AC016454, AL606753, AL662918
S/G/Y/R/B/O NT_021877AL5901382019093483        
S/G/Y/R/B/O NT_021877AL3562752020734051        
S/G/Y/R/B/O NT_021877AC0164542022854081        
S/G/Y/R/B/O NT_021877AL6914412023012551        
S/G/Y/R/B/O NT_021877AC0966362024547251AFM278XE51235.30  1AL691441, AC096636, AL691441
S/G/Y/R/B/O NT_021877AC0966362024547251AFM278XE5  1231.111AL691441, AC096636, AL691441
S/G/Y/R/B/O NT_021877AC0997552025666431AFM179XG51235.30  1 AC099755
S/G/Y/R/B/O NT_021877AC0997552025666431AFM179XG5  1231.111 AC099755
S/G/Y/R/B/O NT_021877AL5901322025932242        
S/G/Y/R/B/O NT_021877AL6037912027433143        
S/G/Y/R/B/O NT_021877AC0920172029312723AFMC011YD51235.30  1AL611964, AC092017, AL611964
S/G/Y/R/B/O NT_021877AC0920172029312723AFMC011YD5  1231.111AL611964, AC092017, AL611964
S/G/Y/R/B/O NT_021877AL6119642029500711        
S/G/Y/R/B/O NT_021877AL5901012030522553        
S/G/Y/R/B/O NT_021877AC0161922031579621        
S/G/Y/R/B/O NT_021877AC1052752031667671        
S/G/Y/R/B/O NT_021877AL3563102033205981        
S/G/Y/R/B/O NT_021877AC0160472033301031        
S/G/Y/R/B/O NT_021877AC0966372034295371        
S/G/Y/R/B/O NT_021877AL4454882035900801        
S/G/Y/R/B/O NT_021877AC0928142036047503AFMB342YG11235.30  1AL445488, AC092814, AL445488
S/G/Y/R/B/O NT_021877AC0928142036047503AFMB342YG1  1231.111AL445488, AC092814, AL445488
S/G/Y/R/B/O NT_021877AC0928142036206043AFM203ZB61235.30  1AL445488, AL445488
S/G/Y/R/B/O NT_021877AC0928142036206043AFM203ZB6  1231.111AL445488, AL445488
S/G/Y/R/B/O NT_021877AL5922972037698513        
S/G/Y/R/B/O NT_021877 - AFM353TD51218.10  1AL590674, AL596266, AL590674, AL596266
S/G/Y/R/B/O NT_021877 - AFM337XD51218.20  1AC012200, AC099673, AC012200, AC099673
S/G/Y/R/B/O NT_021877 - AFMC025XH51218.20  1AC096633, AC096633, AL513362
S/G/Y/R/B/O NT_021877 - AFMA116WG11218.20  1AC096633, AC096633
S/G/Y/R/B/O NT_021877 - AFMB002YA51218.70  1AL139159, AL139159
S/G/Y/R/B/O NT_021877 - AFMA109ZH91219.20  1AC099676, AC099676
S/G/Y/R/B/O NT_021877 - AFMB055ZH51219.20  1AL139159, AL139159
S/G/Y/R/B/O NT_021877 - AFM289YE91219.20  1AC073202, AC103925, Z98266, AC073202, AC103925, Z98266
S/G/Y/R/B/O NT_021877 - AFM238XD101219.20  1AC083954, AC096677, AC083954, AC096677
S/G/Y/R/B/O NT_021877 - AFM136XA71219.20  1AC083954, AC096677, AC083954, AC096677
S/G/Y/R/B/O NT_021877 - AFMB317XC91220.00  1AC096677, AJ251973, AC096677, AJ251973, AL157898
S/G/Y/R/B/O NT_021877 - AFMA272XD91220.70  1AC105940, AL451082, AC105940, AL451082
S/G/Y/R/B/O NT_021877 - AFMA044ZH11220.80  1AL356953, AL356953
S/G/Y/R/B/O NT_021877 - AFMB314WF91220.90  1AL359837, AL359837
S/G/Y/R/B/O NT_021877 - AFM291VF11221.00  1AC015973, AC053522, AL359096, AC015973, AC053522, AL359096
S/G/Y/R/B/O NT_021877 - AFMA190XD51221.10  1AC015973, AC053522, AC015973, AC053522
S/G/Y/R/B/O NT_021877 - AFMA275ZC51221.20  0  
S/G/Y/R/B/O NT_021877 - AFMA123YF11222.70  1 AL355486
S/G/Y/R/B/O NT_021877 - AFMA224XC11222.80  1 AF149301
S/G/Y/R/B/O NT_021877 - AFMB002ZG51222.90  1AC073251, AL592146, AC073251, AL592146
S/G/Y/R/B/O NT_021877 - AFMA132YC91223.00  1AL513343, AL513343


  NT_021877 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_021877 - AFMB334ZB11224.50  1AC018373, AL583832, AC018373, AL583832
S/G/Y/R/B/O NT_021877 - AFMA052ZD51224.60  1AC096675, AC096675
S/G/Y/R/B/O NT_021877 - AFM024XF81224.60  1AL357131, AL357131
S/G/Y/R/B/O NT_021877 - AFM312YB51224.60  1AC096645, AC096645
S/G/Y/R/B/O NT_021877 - AFM234WF61225.10  1AL359702, AL359702