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Chromosome 1 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_019273
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_019273AC0192251109964481        
S/G/Y/R/B/O NT_019273AL3558171109977883        
S/G/Y/R/B/O NT_019273AL3601711110139411        
S/G/Y/R/B/O NT_019273AL1600061110933783        
S/G/Y/R/B/O NT_019273AL3559901111931303AFMA296WE91147.901143.311AC019225, AL360171, AC019225, AL355990, AL360171
S/G/Y/R/B/O NT_019273AL1377901112304993        
S/G/Y/R/B/O NT_019273AC0259871113758401AFM084XB31147.801143.311AC068519, AC025987, AC068519
S/G/Y/R/B/O NT_019273AC0685191113922001        
S/G/Y/R/B/O NT_019273AC0111841114015361        
S/G/Y/R/B/O NT_019273AL1219821115771493AFM036XC51153.901149.201 AL121982, AL158842
S/G/Y/R/B/O NT_019273AL3653181116326323        
S/G/Y/R/B/O NT_019273AL3571371117302073        
S/G/Y/R/B/O NT_019273AL4492641118304743        
S/G/Y/R/B/O NT_019273AL4503891120689772AFMA282VD91153.301149.201 AL450389
S/G/Y/R/B/O NT_019273AL5924361120900263        
S/G/Y/R/B/O NT_019273AP0013931121868081        
S/G/Y/R/B/O NT_019273AL1579501121891453        
S/G/Y/R/B/O NT_019273AL5126381122736462AFM277YF91154.101149.201AP001393, AP001393
S/G/Y/R/B/O NT_019273AL6064991124102933        
S/G/Y/R/B/O NT_019273AL0498251124310553        
S/G/Y/R/B/O NT_019273AL1394281125455763        
S/G/Y/R/B/O NT_019273AL1096601125872553        
S/G/Y/R/B/O NT_019273AL6455021127248183        
S/G/Y/R/B/O NT_019273AL3583721127485633        
S/G/Y/R/B/O NT_019273AL3902351129167713AFM351WB11152.201147.601 AL390235
S/G/Y/R/B/O NT_019273AL0967731130597973AFM240YG11153.301148.671 AL096773
S/G/Y/R/B/O NT_019273AL1333821130635923        
S/G/Y/R/B/O NT_019273AL3902411131449113        
S/G/Y/R/B/O NT_019273AL0354101132683123        
S/G/Y/R/B/O NT_019273AL5122911134107643        
S/G/Y/R/B/O NT_019273AL1219991135052463UT7380  1147.601 AC023551, AL121999
S/G/Y/R/B/O NT_019273AL1219991135308263GGAA20F08  1149.201 AC023551, AL121999
S/G/Y/R/B/O NT_019273AL1625941135556273AFMA060XG51153.301148.671 AC023551, AL162594
S/G/Y/R/B/O NT_019273AL5917421136617593        
S/G/Y/R/B/O NT_019273AC0270741137478081        
S/G/Y/R/B/O NT_019273AL3907971137612593        
S/G/Y/R/B/O NT_019273AL3582151138874723AFMA339ZF51149.001143.311 AL358215
S/G/Y/R/B/O NT_019273AL3653611140095683AFMB032YD11149.001144.381 AL365361, AL513469
S/G/Y/R/B/O NT_019273AL1363741140764023        
S/G/Y/R/B/O NT_019273AL3547131142395543AFM277VH91149.001144.381 AJ243474
S/G/Y/R/B/O NT_019273AL3910641142505263        
S/G/Y/R/B/O NT_019273AL3602701142799333        
S/G/Y/R/B/O NT_019273AL3558161144526382        
S/G/Y/R/B/O NT_019273AL5132021145894843        
S/G/Y/R/B/O NT_019273AL3563871146812243        
S/G/Y/R/B/O NT_019273AL3901951148250973AFMB351ZC91151.201145.861 AL390195
S/G/Y/R/B/O NT_019273AL3910631149199003        
S/G/Y/R/B/O NT_019273AL1390121149768433        
S/G/Y/R/B/O NT_019273AL0495571151003073AFM324VE91151.101146.531 AC022181, AL049557
S/G/Y/R/B/O NT_019273AL4509971151856783MFD227  1145.451 AC022181, AL357144, AL450997


  NT_019273 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_019273AL3900701153330833AFM361TD91151.201146.531 AC016039, AL390070, AP001834
S/G/Y/R/B/O NT_019273AL5126651153352532        
S/G/Y/R/B/O NT_019273AL3571141155048523        
S/G/Y/R/B/O NT_019273AL4454261155087033        
S/G/Y/R/B/O NT_019273AL5915211156658213        
S/G/Y/R/B/O NT_019273AL4504071157609313        
S/G/Y/R/B/O NT_019273AL3547601157937463AFM197YG11152.201147.601 AL354760, AL390062, AL645737
S/G/Y/R/B/O NT_019273AL3547601158507943AFMB283WF11152.201147.601 AL354760
S/G/Y/R/B/O NT_019273AL1099321158870133        
S/G/Y/R/B/O NT_019273AC0244811159853871AFM298VC51152.201147.601 AC024481
S/G/Y/R/B/O NT_019273AC0157301159985991        
S/G/Y/R/B/O NT_019273AL6038321160840691AFMB305ZC91151.201147.601 AL603832
S/G/Y/R/B/O NT_019273AL6720771161453371        
S/G/Y/R/B/O NT_019273AL3907291162097173        
S/G/Y/R/B/O NT_019273AL1588441162793733        
S/G/Y/R/B/O NT_019273AL3902421163307753        
S/G/Y/R/B/O NT_019273AL3570551163995582        
S/G/Y/R/B/O NT_019273AL1390161165819173        
S/G/Y/R/B/O NT_019273AL3652251166269683        
S/G/Y/R/B/O NT_019273AL3910581167793933        
S/G/Y/R/B/O NT_019273AL3899211168598763        
S/G/Y/R/B/O NT_019273AL3907591169266403        
S/G/Y/R/B/O NT_019273AL1335171169980043        
S/G/Y/R/B/O NT_019273AL3653211171235573        
S/G/Y/R/B/O NT_019273AL1378561171624483