Chromosome 5 - Clone Overlaps

Chromosome 5 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034766	NT_037650	NT_037651	NT_023089	NT_006576	NT_023084	NT_037652	NT_037653
NT_006547	NT_023124	NT_023085	NT_034819	NT_006679	NT_023195	NT_034769	NT_023098
NT_037654	NT_023102	NT_037655	NT_037656	NT_037657	NT_033088	NT_023081	NT_006431
NT_037658	NT_037659	NT_006713	NT_030680	NT_037660	NT_029973	NT_023148	NT_006654
NT_037661	NT_034772	NT_006899	NT_030685	NT_025702	NT_016755	NT_007072	NT_034775
NT_034776	NT_037662	NT_037663	NT_037664	NT_016714	NT_029289	NT_006859	NT_034779
NT_006788	NT_030698	NT_023133	NT_037665	NT_023132	NT_037666	NT_034860	NT_037667
NT_006519	NT_037668

NT_006547

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_006547	AC093280	21842554	1	chr5	NT_006547	AC091946	21950848	3	0	1720	0	1720
S/G/Y/R/B/O	NT_006547	AC093280	21842554	1			AC018883	70647988		14966	1720	0	16686
S/G/Y/R/B/O	NT_006547	AC091946	21950848	3	chr5	NT_006547	AC091869	22147663	3	0	0	0	0
S/G/Y/R/B/O	NT_006547	AC091946	21950848	3			AC018883	34984358		108630	3968	22744	135342
S/G/Y/R/B/O	NT_006547	AC091946	21950848	3			AC025779	34984358		22723	0	1488	24211
S/G/Y/R/B/O	NT_006547	AC091946	21950848	3			AC092362	34984358		32921	0	22512	55433
S/G/Y/R/B/O	NT_006547	AC091869	22147663	3	chr5	NT_006547	AC091873	22269795	3	100618	0	0	100618
S/G/Y/R/B/O	NT_006547	AC091869	22147663	3			AC092362	22269795		18070	0	724	18794
S/G/Y/R/B/O	NT_006547	AC091869	22147663	3			AC109452	22269795		57863	0	0	57863
S/G/Y/R/B/O	NT_006547	AC091873	22269795	3	chr5	NT_006547	AC008783	22348082	3	15907	0	0	15907
S/G/Y/R/B/O	NT_006547	AC091873	22269795	3			AC109452	22147663		92715	0	0	92715
S/G/Y/R/B/O	NT_006547	AC008783	22348082	3	chr5	NT_006547	AC091956	22432359	3	41501	0	0	41501
S/G/Y/R/B/O	NT_006547	AC008783	22348082	3			AC109452	22432359		58501	0	0	58501
S/G/Y/R/B/O	NT_006547	AC091956	22432359	3	chr5	NT_006547	AC092361	22600547	3	32525	0	0	32525
S/G/Y/R/B/O	NT_006547	AC091956	22432359	3			AC092358	22348082		28308	0	0	28308
S/G/Y/R/B/O	NT_006547	AC092361	22600547	3	chr5	NT_006547	AC093263	22734153	3	0	0	0	0
S/G/Y/R/B/O	NT_006547	AC092361	22600547	3			AC092358	22432359		91941	1509	29525	122975
S/G/Y/R/B/O	NT_006547	AC093263	22734153	3	chr5	NT_006547	AC034239	22859114	3	0	0	0	0
S/G/Y/R/B/O	NT_006547	AC093263	22734153	3			AC016107	22432359		81298	6822	10842	98962
S/G/Y/R/B/O	NT_006547	AC093263	22734153	3			AC092358	22432359		13170	0	0	13170
S/G/Y/R/B/O	NT_006547	AC093263	22734153	3			AC092370	22432359		20064	0	16185	36249
S/G/Y/R/B/O	NT_006547	AC034239	22859114	3	chr5	NT_006547	AC026716	22941567	3	13176	0	0	13176
S/G/Y/R/B/O	NT_006547	AC034239	22859114	3			AC009279	22432359		53148	1863	8533	63544
S/G/Y/R/B/O	NT_006547	AC034239	22859114	3			AC016107	22432359		21053	0	234	21287
S/G/Y/R/B/O	NT_006547	AC034239	22859114	3			AC091945	22941567		37614	0	642	38256
S/G/Y/R/B/O	NT_006547	AC026716	22941567	3	chr5	NT_006547	AC108089	23043774	3	0	0	97009	97009
S/G/Y/R/B/O	NT_006547	AC026716	22941567	3			AC009279	22941567		63665	7939	3764	75368
S/G/Y/R/B/O	NT_006547	AC026716	22941567	3			AC023987	22941567		30477	0	1855	32332
S/G/Y/R/B/O	NT_006547	AC026716	22941567	3			AC091945	22859114		31514	0	1189	32703
S/G/Y/R/B/O	NT_006547	AC108089	23043774	3	chr5	NT_006547	AC022139	23079712	3	32459	0	0	32459
S/G/Y/R/B/O	NT_006547	AC108089	23043774	3			AC009279	23043774		45602	7939	3775	57316
S/G/Y/R/B/O	NT_006547	AC108089	23043774	3			AC023987	23079712		42546	0	0	42546
S/G/Y/R/B/O	NT_006547	AC108089	23043774	3			AC091945	22941567		25628	0	0	25628
S/G/Y/R/B/O	NT_006547	AC022139	23079712	3	chr5	NT_006547	AC091938	23160229	3	12583	0	0	12583
S/G/Y/R/B/O	NT_006547	AC022139	23079712	3			AC023987	22941567		83497	1718	1151	86366
S/G/Y/R/B/O	NT_006547	AC091938	23160229	3	chr5	NT_006547	AC109455	23214090	3	3638	0	0	3638
S/G/Y/R/B/O	NT_006547	AC091938	23160229	3			AC015611	23043774		28184	2125	1820	32129
S/G/Y/R/B/O	NT_006547	AC091938	23160229	3			AC023987	23079712		34926	2368	2476	39770
S/G/Y/R/B/O	NT_006547	AC109455	23214090	3	chr5	NT_006547	AC010445	23369957	3	0	0	0	0
S/G/Y/R/B/O	NT_006547	AC109455	23214090	3			AC015611	23214090		81519	6543	13468	101530
S/G/Y/R/B/O	NT_006547	AC109455	23214090	3			AC024416	23214090		17439	2672	10328	30439
S/G/Y/R/B/O	NT_006547	AC109455	23214090	3			AC053491	23214090		77499	0	27942	105441
S/G/Y/R/B/O	NT_006547	AC010445	23369957	3	chr5	NT_006547	AC114298	23463595	1	0	0	80265	80265
S/G/Y/R/B/O	NT_006547	AC010445	23369957	3			AC024416	23160229		78699	6083	3856	88638
S/G/Y/R/B/O	NT_006547	AC114298	23463595	1	chr5	NT_006547	AC026418	23526156	3	0	0	0	0
S/G/Y/R/B/O	NT_006547	AC114298	23463595	1			AC011952	23369957		39528	4316	2889	46733
S/G/Y/R/B/O	NT_006547	AC114298	23463595	1			AC024416	23369957		51830	4519	5929	62278
S/G/Y/R/B/O	NT_006547	AC114298	23463595	1			AC068482	23369957		53690	0	24806	78496
S/G/Y/R/B/O	NT_006547	AC026418	23526156	3	chr5	NT_006547	AC010460	23679354	3	17148	0	0	17148
S/G/Y/R/B/O	NT_006547	AC026418	23526156	3			AC011952	23679354		29007	19822	15162	63991
S/G/Y/R/B/O	NT_006547	AC010460	23679354	3	chr5	NT_006547	AC113422	23771273	3	37087	0	0	37087
S/G/Y/R/B/O	NT_006547	AC113422	23771273	3	chr5	NT_006547	AC109445	23806715	3	3745	0	0	3745
S/G/Y/R/B/O	NT_006547	AC109445	23806715	3	chr5	NT_006547	AC025451	23938792	3	29599	0	0	29599
S/G/Y/R/B/O	NT_006547	AC109445	23806715	3			AC010432	23806715		70152	0	0	70152
S/G/Y/R/B/O	NT_006547	AC109445	23806715	3			AC106778	23938792		21482	0	1972	23454
S/G/Y/R/B/O	NT_006547	AC025451	23938792	3	chr5	NT_006547	AC106755	24045564	3	23209	0	0	23209
S/G/Y/R/B/O	NT_006547	AC025451	23938792	3			AC106778	24045564		19657	2394	11550	33601
S/G/Y/R/B/O	NT_006547	AC106755	24045564	3	chr5	NT_006547	AC108103	24109208	3	20449	0	0	20449
S/G/Y/R/B/O	NT_006547	AC106755	24045564	3			AC068916	23938792		27593	0	221	27814
S/G/Y/R/B/O	NT_006547	AC108103	24109208	3	chr5	NT_006547	AC024565	24240643	3	7433	0	0	7433
S/G/Y/R/B/O	NT_006547	AC108103	24109208	3			AC068916	24240643		46333	2784	4521	53638
S/G/Y/R/B/O	NT_006547	AC024565	24240643	3	chr5	NT_006547	AC108093	24341248	3	0	0	0	0
S/G/Y/R/B/O	NT_006547	AC024565	24240643	3			AC026971	24045564		33515	0	0	33515
S/G/Y/R/B/O	NT_006547	AC108093	24341248	3	chr5	NT_006547	AC026784	24404673	3	0	0	0	0
S/G/Y/R/B/O	NT_006547	AC026784	24404673	3	chr5	NT_006547	AC091828	24500339	3	19360	0	0	19360
S/G/Y/R/B/O	NT_006547	AC026784	24404673	3			AC114317	24500339		73670	0	0	73670
S/G/Y/R/B/O	NT_006547	AC091828	24500339	3	chr5	NT_006547	AC010342	24548885	3	47990	0	0	47990
S/G/Y/R/B/O	NT_006547	AC010342	24548885	3	chr5	NT_006547	AC114930	24626869	3	44294	0	0	44294
S/G/Y/R/B/O	NT_006547	AC114930	24626869	3	chr5	NT_006547	AC118456	24666495	3	16313	0	0	16313
S/G/Y/R/B/O	NT_006547	AC118456	24666495	3	chr5	NT_006547	AC010387	24788317	3	0	0	25498	25498
S/G/Y/R/B/O	NT_006547	AC118456	24666495	3			AC012059	24788317		17172	0	31931	49103
S/G/Y/R/B/O	NT_006547	AC010387	24788317	3	chr5	NT_006547	AC091885	24935722	3	13254	0	0	13254
S/G/Y/R/B/O	NT_006547	AC010387	24788317	3			AC012059	24626869		94802	0	3591	98393
S/G/Y/R/B/O	NT_006547	AC010387	24788317	3			AC027469	24626869		13254	0	0	13254
S/G/Y/R/B/O	NT_006547	AC091885	24935722	3	chr5	NT_006547	AC109483	25089752	3	0	0	0	0
S/G/Y/R/B/O	NT_006547	AC091885	24935722	3			AC027469	24788317		81404	0	77770	159174
S/G/Y/R/B/O	NT_006547	AC109483	25089752	3	chr5	NT_006547	AC091893	25151528	3	33391	0	0	33391
S/G/Y/R/B/O	NT_006547	AC109483	25089752	3			AC010775	24788317		14895	1867	13215	29977
S/G/Y/R/B/O	NT_006547	AC091893	25151528	3	chr5	NT_006547	AC106821	25272501	3	0	0	0	0
S/G/Y/R/B/O	NT_006547	AC091893	25151528	3			AC010775	25151528		28562	4586	15155	48303
S/G/Y/R/B/O	NT_006547	AC106821	25272501	3	chr5	NT_006547	AC026428	25387696	3	47508	0	0	47508
S/G/Y/R/B/O	NT_006547	AC106821	25272501	3			AC025113	25089752		57090	2505	20282	79877
S/G/Y/R/B/O	NT_006547	AC026428	25387696	3	chr5	NT_006547	AC025189	25425294	3	37549	0	0	37549
S/G/Y/R/B/O	NT_006547	AC026428	25387696	3			AC025113	25387696		30417	3445	10750	44612
S/G/Y/R/B/O	NT_006547	AC025189	25425294	3	chr5	NT_006547	AC106810	25544568	3	0	0	0	0
S/G/Y/R/B/O	NT_006547	AC025189	25425294	3			AC025676	25272501		36596	3338	15424	55358
S/G/Y/R/B/O	NT_006547	AC106810	25544568	3	chr5	NT_006547	AC099499	25606608	3	18263	0	0	18263
S/G/Y/R/B/O	NT_006547	AC106810	25544568	3			AC023980	25387696		12123	3668	1576	17367
S/G/Y/R/B/O	NT_006547	AC106810	25544568	3			AC025676	25387696		18909	0	0	18909
S/G/Y/R/B/O	NT_006547	AC099499	25606608	3	chr5	NT_006547	AC106754	25734094	3	12326	0	0	12326
S/G/Y/R/B/O	NT_006547	AC099499	25606608	3			AC023980	25606608		56633	5691	2822	65146
S/G/Y/R/B/O	NT_006547	AC099499	25606608	3			AC025676	25606608		19498	0	0	19498
S/G/Y/R/B/O	NT_006547	AC099499	25606608	3			AC032041	25606608		54313	2994	0	57307
S/G/Y/R/B/O	NT_006547	AC106754	25734094	3	chr5	NT_006547	AC022140	25845303	3	0	0	0	0
S/G/Y/R/B/O	NT_006547	AC106754	25734094	3			AC023980	25544568		11916	0	0	11916
S/G/Y/R/B/O	NT_006547	AC106754	25734094	3			AC032041	25544568		77584	4076	11630	93290
S/G/Y/R/B/O	NT_006547	AC022140	25845303	3	chr5	NT_006547	AC010347	25927949	3	0	0	0	0
S/G/Y/R/B/O	NT_006547	AC010347	25927949	3	chr5	NT_006547	AC022418	26054530	3	28438	0	0	28438
S/G/Y/R/B/O	NT_006547	AC010347	25927949	3			AC090075	26054530		11756	0	9148	20904
S/G/Y/R/B/O	NT_006547	AC010347	25927949	3			AC094093	26054530		27186	0	12085	39271
S/G/Y/R/B/O	NT_006547	AC022418	26054530	3	chr5	NT_006547	AC022448	26171166	3	25422	0	0	25422
S/G/Y/R/B/O	NT_006547	AC022418	26054530	3			AC012631	25927949		40586	0	1508	42094
S/G/Y/R/B/O	NT_006547	AC022418	26054530	3			AC093212	26171166		57775	0	0	57775
S/G/Y/R/B/O	NT_006547	AC022448	26171166	3	chr5	NT_006547	AC109469	26311148	3	58446	0	0	58446
S/G/Y/R/B/O	NT_006547	AC022448	26171166	3			AC010498	26171166		83768	0	0	83768
S/G/Y/R/B/O	NT_006547	AC022448	26171166	3			AC012631	26171166		15129	0	0	15129
S/G/Y/R/B/O	NT_006547	AC022448	26171166	3			AC093212	26054530		107093	0	0	107093
S/G/Y/R/B/O	NT_006547	AC109469	26311148	3	chr5	NT_006547	AC113370	26434748	3	98428	0	0	98428
S/G/Y/R/B/O	NT_006547	AC109469	26311148	3			AC010498	26311148		73977	0	0	73977
S/G/Y/R/B/O	NT_006547	AC113370	26434748	3	chr5	NT_006547	AC093294	26525549	3	53354	0	0	53354
S/G/Y/R/B/O	NT_006547	AC113370	26434748	3			AC010474	26434748		28892	0	0	28892
S/G/Y/R/B/O	NT_006547	AC113370	26434748	3			AC112174	26311148		19812	0	0	19812
S/G/Y/R/B/O	NT_006547	AC093294	26525549	3	chr5	NT_006547	AC113431	26643934	1	0	0	31232	31232
S/G/Y/R/B/O	NT_006547	AC113431	26643934	1	chr5	NT_006547	AC025475	26751862	3	0	0	16821	16821
S/G/Y/R/B/O	NT_006547	AC113431	26643934	1			AC114282	26525549		68476	0	1592	70068
S/G/Y/R/B/O	NT_006547	AC025475	26751862	3	chr5	NT_006547	AC010483	26938324	3	42043	0	0	42043
S/G/Y/R/B/O	NT_006547	AC010483	26938324	3	chr5	NT_006547	AC026426	26990164	3	14503	0	0	14503
S/G/Y/R/B/O	NT_006547	AC026426	26990164	3	chr5	NT_006547	AC113347	27044141	3	0	1868	0	1868
S/G/Y/R/B/O	NT_006547	AC113347	27044141	3	chr5	NT_006547	AC027333	27170425	3	57823	0	0	57823
S/G/Y/R/B/O	NT_006547	AC113347	27044141	3			AC025760	27044141		92926	0	0	92926
S/G/Y/R/B/O	NT_006547	AC113347	27044141	3			AC027321	26990164		26878	0	0	26878
S/G/Y/R/B/O	NT_006547	AC027333	27170425	3	chr5	NT_006547	AC022450	27293131	3	0	0	0	0
S/G/Y/R/B/O	NT_006547	AC027333	27170425	3			AC025760	27170425		46107	0	0	46107
S/G/Y/R/B/O	NT_006547	AC027333	27170425	3			AC027321	27170425		115199	3918	13116	132233
S/G/Y/R/B/O	NT_006547	AC022450	27293131	3	chr5	NT_006547	AC010470	27412041	3	8835	0	0	8835
S/G/Y/R/B/O	NT_006547	AC022450	27293131	3			AC027321	27412041		33135	0	0	33135
S/G/Y/R/B/O	NT_006547	AC010470	27412041	3	chr5	NT_006547	AC112193	27542786	3	6433	0	0	6433
S/G/Y/R/B/O	NT_006547	AC010470	27412041	3	chr5	NT_037653	AC093308	21814585	3	13795	0	0	13795
S/G/Y/R/B/O	NT_006547	AC112193	27542786	3	chr5	NT_006547	AC022439	27709433	3	25474	0	0	25474
S/G/Y/R/B/O	NT_006547	AC112193	27542786	3			AC021405	27412041		25498	0	0	25498
S/G/Y/R/B/O	NT_006547	AC022439	27709433	3	chr5	NT_006547	AC113355	27818495	3	25809	0	0	25809
S/G/Y/R/B/O	NT_006547	AC022439	27709433	3			AC010439	21814585		40999	2445	5778	49222
S/G/Y/R/B/O	NT_006547	AC022439	27709433	3			AC021405	21814585		91904	4232	3296	99432
S/G/Y/R/B/O	NT_006547	AC113355	27818495	3	chr5	NT_006547	AC093533	27922958	1	12092	0	25595	37687
S/G/Y/R/B/O	NT_006547	AC113355	27818495	3			AC010439	27818495		44040	4169	7337	55546
S/G/Y/R/B/O	NT_006547	AC113355	27818495	3			AC011082	27818495		37141	0	0	37141
S/G/Y/R/B/O	NT_006547	AC113355	27818495	3			AC021405	27818495		21250	0	0	21250
S/G/Y/R/B/O	NT_006547	AC093533	27922958	1
S/G/Y/R/B/O	NT_006547	AC093533	27922958	1			AC011082	27922958		12093	0	143226	155319