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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_006788 | AC114959 | 155743066 | 3 | chr5 | NT_006788 | AC131565 | 155744248 | 3 | 162623 | 0 | 0 | 162623 |
S/G/Y/R/B/O |
NT_006788 | AC114959 | 155743066 | 3 | chr5 | NT_006788 | AC011351 | 155840997 | 3 | 65002 | 0 | 0 | 65002 |
S/G/Y/R/B/O |
NT_006788 | AC114959 | 155743066 | 3 |   |   | AC011368 | 155840997 | | 112330 | 0 | 0 | 112330 |
S/G/Y/R/B/O |
NT_006788 | AC114959 | 155743066 | 3 |   |   | AC022410 | 155840997 | | 68221 | 0 | 0 | 68221 |
S/G/Y/R/B/O |
NT_006788 | AC131565 | 155744248 | 3 | chr5 | NT_006788 | AC011351 | 155840997 | 3 | 83622 | 0 | 0 | 83622 |
S/G/Y/R/B/O |
NT_006788 | AC131565 | 155744248 | 3 |   |   | AC011368 | 155840997 | | 112330 | 0 | 0 | 112330 |
S/G/Y/R/B/O |
NT_006788 | AC131565 | 155744248 | 3 |   |   | AC022410 | 155840997 | | 68221 | 0 | 0 | 68221 |
S/G/Y/R/B/O |
NT_006788 | AC011351 | 155840997 | 3 | chr5 | NT_006788 | AC011413 | 156017801 | 3 | 29766 | 0 | 0 | 29766 |
S/G/Y/R/B/O |
NT_006788 | AC011351 | 155840997 | 3 | chr5 | NT_006788 | AC114959 | 155743066 | 3 | 65002 | 0 | 0 | 65002 |
S/G/Y/R/B/O |
NT_006788 | AC011351 | 155840997 | 3 |   |   | AC011368 | 155743066 | | 63343 | 0 | 0 | 63343 |
S/G/Y/R/B/O |
NT_006788 | AC011413 | 156017801 | 3 | chr5 | NT_006788 | AC011347 | 156124380 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006788 | AC011347 | 156124380 | 3 | chr5 | NT_006788 | AC010304 | 156225244 | 3 | 44226 | 0 | 0 | 44226 |
S/G/Y/R/B/O |
NT_006788 | AC010304 | 156225244 | 3 | chr5 | NT_006788 | AC027308 | 156243210 | 3 | 0 | 0 | 6765 | 6765 |
S/G/Y/R/B/O |
NT_006788 | AC027308 | 156243210 | 3 | chr5 | NT_006788 | AC011345 | 156506232 | 3 | 36801 | 0 | 0 | 36801 |
S/G/Y/R/B/O |
NT_006788 | AC011345 | 156506232 | 3 | chr5 | NT_006788 | AC008535 | 156575115 | 3 | 5305 | 0 | 0 | 5305 |
S/G/Y/R/B/O |
NT_006788 | AC011345 | 156506232 | 3 |   |   | AC008726 | 156575115 | | 71165 | 0 | 2205 | 73370 |
S/G/Y/R/B/O |
NT_006788 | AC008535 | 156575115 | 3 | chr5 | NT_006788 | AC016577 | 156620587 | 3 | 5833 | 0 | 0 | 5833 |
S/G/Y/R/B/O |
NT_006788 | AC008535 | 156575115 | 3 |   |   | AC008726 | 156243210 | | 13996 | 0 | 2040 | 16036 |
S/G/Y/R/B/O |
NT_006788 | AC016577 | 156620587 | 3 | chr5 | NT_006788 | AC025434 | 156692345 | 3 | 41124 | 0 | 0 | 41124 |
S/G/Y/R/B/O |
NT_006788 | AC016577 | 156620587 | 3 |   |   | AC026734 | 156692345 | | 35619 | 1604 | 988 | 38211 |
S/G/Y/R/B/O |
NT_006788 | AC025434 | 156692345 | 3 | chr5 | NT_006788 | AC011414 | 156781523 | 3 | 59986 | 0 | 0 | 59986 |
S/G/Y/R/B/O |
NT_006788 | AC025434 | 156692345 | 3 |   |   | AC026734 | 156620587 | | 108905 | 2479 | 14059 | 125443 |
S/G/Y/R/B/O |
NT_006788 | AC011414 | 156781523 | 3 | chr5 | NT_006788 | AC008491 | 156844756 | 3 | 46534 | 0 | 0 | 46534 |
S/G/Y/R/B/O |
NT_006788 | AC011414 | 156781523 | 3 |   |   | AC026734 | 156692345 | | 53174 | 2441 | 0 | 55615 |
S/G/Y/R/B/O |
NT_006788 | AC008491 | 156844756 | 3 | chr5 | NT_006788 | AC026777 | 156941858 | 3 | 21996 | 0 | 0 | 21996 |
S/G/Y/R/B/O |
NT_006788 | AC008491 | 156844756 | 3 |   |   | AC010315 | 156692345 | | 65693 | 0 | 0 | 65693 |
S/G/Y/R/B/O |
NT_006788 | AC026777 | 156941858 | 3 | chr5 | NT_006788 | AC011377 | 157060192 | 3 | 14907 | 0 | 0 | 14907 |
S/G/Y/R/B/O |
NT_006788 | AC011377 | 157060192 | 3 | chr5 | NT_006788 | AC010609 | 157099659 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006788 | AC010609 | 157099659 | 3 | chr5 | NT_006788 | AC008389 | 157238641 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006788 | AC008389 | 157238641 | 3 | chr5 | NT_006788 | AC009185 | 157244710 | 3 | 41361 | 0 | 0 | 41361 |
S/G/Y/R/B/O |
NT_006788 | AC009185 | 157244710 | 3 | chr5 | NT_006788 | AC016571 | 157291272 | 3 | 12966 | 0 | 0 | 12966 |
S/G/Y/R/B/O |
NT_006788 | AC016571 | 157291272 | 3 | chr5 | NT_006788 | AC008676 | 157351574 | 3 | 27318 | 0 | 0 | 27318 |
S/G/Y/R/B/O |
NT_006788 | AC008676 | 157351574 | 3 | chr5 | NT_006788 | AC106801 | 157532270 | 3 | 23596 | 0 | 0 | 23596 |
S/G/Y/R/B/O |
NT_006788 | AC106801 | 157532270 | 3 | chr5 | NT_006788 | AC008694 | 157547105 | 3 | 14285 | 0 | 0 | 14285 |
S/G/Y/R/B/O |
NT_006788 | AC008694 | 157547105 | 3 | chr5 | NT_006788 | AC106759 | 157669661 | 3 | 7153 | 0 | 0 | 7153 |
S/G/Y/R/B/O |
NT_006788 | AC106759 | 157669661 | 3 | chr5 | NT_006788 | AC026407 | 157678844 | 3 | 8548 | 0 | 0 | 8548 |
S/G/Y/R/B/O |
NT_006788 | AC026407 | 157678844 | 3 | chr5 | NT_006788 | AC011394 | 157825640 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006788 | AC026407 | 157678844 | 3 |   |   | AC007526 | 157678844 | | 22492 | 0 | 1457 | 23949 |
S/G/Y/R/B/O |
NT_006788 | AC011394 | 157825640 | 3 | chr5 | NT_006788 | AC022411 | 157866889 | 3 | 29654 | 0 | 0 | 29654 |
S/G/Y/R/B/O |
NT_006788 | AC011394 | 157825640 | 3 |   |   | AC007526 | 157669661 | | 22501 | 0 | 1701 | 24202 |
S/G/Y/R/B/O |
NT_006788 | AC022411 | 157866889 | 3 | chr5 | NT_006788 | AC008677 | 157907010 | 3 | 5464 | 0 | 0 | 5464 |
S/G/Y/R/B/O |
NT_006788 | AC022411 | 157866889 | 3 |   |   | AC007526 | 157866889 | | 29609 | 10143 | 1462 | 41214 |
S/G/Y/R/B/O |
NT_006788 | AC008677 | 157907010 | 3 | chr5 | NT_006788 | AC091880 | 158062475 | 3 | 29537 | 0 | 0 | 29537 |
S/G/Y/R/B/O |
NT_006788 | AC008677 | 157907010 | 3 |   |   | AC007526 | 157825640 | | 36054 | 2771 | 4367 | 43192 |
S/G/Y/R/B/O |
NT_006788 | AC008677 | 157907010 | 3 |   |   | AL136059 | 158062475 | | 58990 | 0 | 0 | 58990 |
S/G/Y/R/B/O |
NT_006788 | AC091880 | 158062475 | 3 | chr5 | NT_006788 | AC025437 | 158126625 | 3 | 0 | 0 | 23445 | 23445 |
S/G/Y/R/B/O |
NT_006788 | AC091880 | 158062475 | 3 |   |   | AC010258 | 157907010 | | 64559 | 0 | 0 | 64559 |
S/G/Y/R/B/O |
NT_006788 | AC025437 | 158126625 | 3 | chr5 | NT_006788 | AC091975 | 158273898 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006788 | AC025437 | 158126625 | 3 |   |   | AC010258 | 158126625 | | 38682 | 0 | 91650 | 130332 |
S/G/Y/R/B/O |
NT_006788 | AC025437 | 158126625 | 3 |   |   | AL136059 | 158062475 | | 88484 | 0 | 0 | 88484 |
S/G/Y/R/B/O |
NT_006788 | AC025437 | 158126625 | 3 |   |   | AL162332 | 158062475 | | 51742 | 1983 | 33108 | 86833 |
S/G/Y/R/B/O |
NT_006788 | AC091975 | 158273898 | 3 | chr5 | NT_006788 | AC091979 | 158383511 | 3 | 9231 | 0 | 0 | 9231 |
S/G/Y/R/B/O |
NT_006788 | AC091975 | 158273898 | 3 |   |   | AC068391 | 158062475 | | 33369 | 2060 | 10146 | 45575 |
S/G/Y/R/B/O |
NT_006788 | AC091975 | 158273898 | 3 |   |   | AC068391 | 158062475 | | 33369 | 2060 | 10146 | 45575 |
S/G/Y/R/B/O |
NT_006788 | AC091979 | 158383511 | 3 | chr5 | NT_006788 | AC091939 | 158447457 | 3 | 3948 | 0 | 0 | 3948 |
S/G/Y/R/B/O |
NT_006788 | AC091979 | 158383511 | 3 |   |   | AC068391 | 158383511 | | 36951 | 3885 | 1211 | 42047 |
S/G/Y/R/B/O |
NT_006788 | AC091939 | 158447457 | 3 | chr5 | NT_006788 | AC008442 | 158633855 | 3 | 0 | 0 | 28864 | 28864 |
S/G/Y/R/B/O |
NT_006788 | AC091939 | 158447457 | 3 |   |   | AC010254 | 158633855 | | 63629 | 0 | 0 | 63629 |
S/G/Y/R/B/O |
NT_006788 | AC091939 | 158447457 | 3 |   |   | AC010414 | 158633855 | | 118988 | 0 | 0 | 118988 |
S/G/Y/R/B/O |
NT_006788 | AC091939 | 158447457 | 3 |   |   | AC068391 | 158633855 | | 58683 | 6920 | 0 | 65603 |
S/G/Y/R/B/O |
NT_006788 | AC008442 | 158633855 | 3 | chr5 | NT_006788 | AC011344 | 158776685 | 2 | 34123 | 0 | 0 | 34123 |
S/G/Y/R/B/O |
NT_006788 | AC008442 | 158633855 | 3 |   |   | AC010254 | 158383511 | | 137739 | 0 | 0 | 137739 |
S/G/Y/R/B/O |
NT_006788 | AC011344 | 158776685 | 2 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_006788 | AC011344 | 158776685 | 2 |   |   | AC007200 | 158447457 | | 17230 | 0 | 0 | 17230 |
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