Chromosome 5 - Clone Overlaps

Chromosome 5 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034766	NT_037650	NT_037651	NT_023089	NT_006576	NT_023084	NT_037652	NT_037653
NT_006547	NT_023124	NT_023085	NT_034819	NT_006679	NT_023195	NT_034769	NT_023098
NT_037654	NT_023102	NT_037655	NT_037656	NT_037657	NT_033088	NT_023081	NT_006431
NT_037658	NT_037659	NT_006713	NT_030680	NT_037660	NT_029973	NT_023148	NT_006654
NT_037661	NT_034772	NT_006899	NT_030685	NT_025702	NT_016755	NT_007072	NT_034775
NT_034776	NT_037662	NT_037663	NT_037664	NT_016714	NT_029289	NT_006859	NT_034779
NT_006788	NT_030698	NT_023133	NT_037665	NT_023132	NT_037666	NT_034860	NT_037667
NT_006519	NT_037668

NT_023133

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_023133	AC113414	162926942	3	chr5	NT_023133	AC091930	163096953	3	0	0	0	0
S/G/Y/R/B/O	NT_023133	AC113414	162926942	3	chr5	NT_030698	AC091921	162750724	3	75273	0	0	75273
S/G/Y/R/B/O	NT_023133	AC113414	162926942	3			AC015479	162926942		10310	0	0	10310
S/G/Y/R/B/O	NT_023133	AC113414	162926942	3			AC021160	162926942		89415	2011	30847	122273
S/G/Y/R/B/O	NT_023133	AC091930	163096953	3	chr5	NT_023133	AC091976	163204942	3	50826	0	0	50826
S/G/Y/R/B/O	NT_023133	AC091930	163096953	3			AC021160	162750724		24894	0	25785	50679
S/G/Y/R/B/O	NT_023133	AC091976	163204942	3	chr5	NT_023133	AC008428	163329645	3	52718	0	0	52718
S/G/Y/R/B/O	NT_023133	AC091976	163204942	3			AC010263	163329645		43727	1872	53834	99433
S/G/Y/R/B/O	NT_023133	AC008428	163329645	3	chr5	NT_023133	AC008723	163424885	3	4780	0	0	4780
S/G/Y/R/B/O	NT_023133	AC008428	163329645	3			AC010263	163424885		10017	3634	29564	43215
S/G/Y/R/B/O	NT_023133	AC008723	163424885	3	chr5	NT_023133	AC112205	163529698	3	79029	0	0	79029
S/G/Y/R/B/O	NT_023133	AC008723	163424885	3			AC025840	163329645		46522	3821	4809	55152
S/G/Y/R/B/O	NT_023133	AC112205	163529698	3	chr5	NT_023133	AC010291	163587957	3	25849	0	0	25849
S/G/Y/R/B/O	NT_023133	AC112205	163529698	3			AC025840	163587957		74096	2236	28978	105310
S/G/Y/R/B/O	NT_023133	AC010291	163587957	3	chr5	NT_023133	AC116917	163688162	3	0	0	0	0
S/G/Y/R/B/O	NT_023133	AC010291	163587957	3			AC011688	196341627		60341	2598	6443	69382
S/G/Y/R/B/O	NT_023133	AC010291	163587957	3			AC025840	196341627		24892	0	0	24892
S/G/Y/R/B/O	NT_023133	AC116917	163688162	3	chr5	NT_023133	AC008432	163837548	3	59039	0	0	59039
S/G/Y/R/B/O	NT_023133	AC116917	163688162	3			AC011688	163837548		67749	0	7879	75628
S/G/Y/R/B/O	NT_023133	AC116917	163688162	3			AC024342	163837548		36763	2493	7576	46832
S/G/Y/R/B/O	NT_023133	AC008432	163837548	3	chr5	NT_023133	AC008603	163948567	3	56502	0	0	56502
S/G/Y/R/B/O	NT_023133	AC008432	163837548	3			AC024342	163948567		53055	2508	8393	63956
S/G/Y/R/B/O	NT_023133	AC008603	163948567	3	chr5	NT_023133	AC008376	164015778	3	5177	0	0	5177
S/G/Y/R/B/O	NT_023133	AC008603	163948567	3			AC024342	163837548		17653	0	208	17861
S/G/Y/R/B/O	NT_023133	AC008376	164015778	3	chr5	NT_023133	AC008662	164152764	3	0	0	0	0
S/G/Y/R/B/O	NT_023133	AC008662	164152764	3	chr5	NT_023133	AC011392	164255801	3	26659	0	0	26659
S/G/Y/R/B/O	NT_023133	AC011392	164255801	3	chr5	NT_023133	AC091997	164319906	3	27047	0	0	27047
S/G/Y/R/B/O	NT_023133	AC091997	164319906	3	chr5	NT_023133	AC122698	164436074	3	40379	0	0	40379
S/G/Y/R/B/O	NT_023133	AC091997	164319906	3			AC013667	164255801		29665	0	0	29665
S/G/Y/R/B/O	NT_023133	AC122698	164436074	3	chr5	NT_023133	AC091974	164460595	3	42387	0	0	42387
S/G/Y/R/B/O	NT_023133	AC122698	164436074	3			AC024317	164436074		25113	1368	0	26481
S/G/Y/R/B/O	NT_023133	AC091974	164460595	3	chr5	NT_023133	AC008446	164591448	3	18127	0	0	18127
S/G/Y/R/B/O	NT_023133	AC091974	164460595	3			AC010278	164591448		75858	0	0	75858
S/G/Y/R/B/O	NT_023133	AC091974	164460595	3			AC024317	164591448		82094	4818	15862	102774
S/G/Y/R/B/O	NT_023133	AC008446	164591448	3	chr5	NT_023133	AC008724	164725534	3	28478	0	0	28478
S/G/Y/R/B/O	NT_023133	AC008446	164591448	3			AC010278	164725534		93689	0	0	93689
S/G/Y/R/B/O	NT_023133	AC008446	164591448	3			AC024317	164725534		22120	2984	37924	63028
S/G/Y/R/B/O	NT_023133	AC008724	164725534	3	chr5	NT_023133	AC008416	164748480	3	22885	0	0	22885
S/G/Y/R/B/O	NT_023133	AC008416	164748480	3	chr5	NT_023133	AC091923	164824122	3	0	0	0	0
S/G/Y/R/B/O	NT_023133	AC091923	164824122	3	chr5	NT_023133	AC091907	164879434	3	2618	0	0	2618
S/G/Y/R/B/O	NT_023133	AC091907	164879434	3	chr5	NT_023133	AC109466	165027214	3	0	0	0	0
S/G/Y/R/B/O	NT_023133	AC091907	164879434	3			AC113375	164824122		41142	0	0	41142
S/G/Y/R/B/O	NT_023133	AC109466	165027214	3	chr5	NT_023133	AC091973	165128678	3	87627	0	0	87627
S/G/Y/R/B/O	NT_023133	AC109466	165027214	3			AC008396	164824122		48014	0	0	48014
S/G/Y/R/B/O	NT_023133	AC109466	165027214	3			AC113375	165128678		142203	0	0	142203
S/G/Y/R/B/O	NT_023133	AC091973	165128678	3	chr5	NT_023133	AC008644	165183288	3	13998	0	0	13998
S/G/Y/R/B/O	NT_023133	AC091973	165128678	3			AC008396	165128678		116151	0	0	116151
S/G/Y/R/B/O	NT_023133	AC091973	165128678	3			AC113375	165027214		87277	0	0	87277
S/G/Y/R/B/O	NT_023133	AC008644	165183288	3	chr5	NT_023133	AC011403	165283569	3	30298	0	0	30298
S/G/Y/R/B/O	NT_023133	AC008644	165183288	3			AC008396	165027214		41230	0	0	41230
S/G/Y/R/B/O	NT_023133	AC011403	165283569	3	chr5	NT_023133	AC010428	165377823	3	79584	0	0	79584
S/G/Y/R/B/O	NT_023133	AC011403	165283569	3			AC091964	165377823		92966	0	0	92966
S/G/Y/R/B/O	NT_023133	AC010428	165377823	3	chr5	NT_023133	AC008646	165410953	3	0	0	0	0
S/G/Y/R/B/O	NT_023133	AC010428	165377823	3			AC091964	165283569		126802	0	0	126802
S/G/Y/R/B/O	NT_023133	AC008646	165410953	3	chr5	NT_023133	AC008415	165585881	3	84245	0	0	84245
S/G/Y/R/B/O	NT_023133	AC008646	165410953	3			AC091927	165585881		74897	0	0	74897
S/G/Y/R/B/O	NT_023133	AC008646	165410953	3			AC091964	165585881		36291	0	0	36291
S/G/Y/R/B/O	NT_023133	AC008415	165585881	3	chr5	NT_023133	AC008384	165669948	3	32989	0	0	32989
S/G/Y/R/B/O	NT_023133	AC008415	165585881	3			AC091927	165410953		31353	0	0	31353
S/G/Y/R/B/O	NT_023133	AC008384	165669948	3	chr5	NT_023133	AC008562	165731972	3	49332	0	0	49332
S/G/Y/R/B/O	NT_023133	AC008384	165669948	3			AC009609	165731972		71511	2098	1886	75495
S/G/Y/R/B/O	NT_023133	AC008562	165731972	3	chr5	NT_023133	AC008489	165809899	3	0	0	0	0
S/G/Y/R/B/O	NT_023133	AC008562	165731972	3			AC009609	165669948		33067	5802	31168	70037
S/G/Y/R/B/O	NT_023133	AC008489	165809899	3	chr5	NT_023133	AC008499	165934306	3	57096	0	0	57096
S/G/Y/R/B/O	NT_023133	AC008489	165809899	3			AC016578	165934306		90321	4602	0	94923
S/G/Y/R/B/O	NT_023133	AC008489	165809899	3			AC016579	165934306		96530	0	0	96530
S/G/Y/R/B/O	NT_023133	AC008499	165934306	3	chr5	NT_023133	AC114321	166121726	3	0	0	0	0
S/G/Y/R/B/O	NT_023133	AC008499	165934306	3			AC016552	165809899		91897	0	0	91897
S/G/Y/R/B/O	NT_023133	AC008499	165934306	3			AC016578	165809899		103723	2739	0	106462
S/G/Y/R/B/O	NT_023133	AC008499	165934306	3			AC025745	165809899		23851	0	0	23851
S/G/Y/R/B/O	NT_023133	AC114321	166121726	3	chr5	NT_023133	AC122720	166224082	3	55114	0	0	55114
S/G/Y/R/B/O	NT_023133	AC114321	166121726	3			AC016552	165809899		40208	0	0	40208
S/G/Y/R/B/O	NT_023133	AC114321	166121726	3			AC025745	165809899		62837	0	29561	92398
S/G/Y/R/B/O	NT_023133	AC114321	166121726	3			AC026345	165809899		32739	1822	0	34561
S/G/Y/R/B/O	NT_023133	AC114321	166121726	3			AC122699	165809899		20988	0	0	20988
S/G/Y/R/B/O	NT_023133	AC122720	166224082	3	chr5	NT_023133	AC026403	166311604	3	17716	0	0	17716
S/G/Y/R/B/O	NT_023133	AC122720	166224082	3			AC025745	166224082		46157	0	3300	49457
S/G/Y/R/B/O	NT_023133	AC122720	166224082	3			AC026345	166224082		56063	0	65075	121138
S/G/Y/R/B/O	NT_023133	AC122720	166224082	3			AC073914	166311604		44923	7486	8772	61181
S/G/Y/R/B/O	NT_023133	AC122720	166224082	3			AC122699	166121726		92390	0	11692	104082
S/G/Y/R/B/O	NT_023133	AC026403	166311604	3	chr5	NT_023133	AC091972	166450140	3	8062	0	0	8062
S/G/Y/R/B/O	NT_023133	AC026403	166311604	3			AC018591	166121726		43577	2616	3276	49469
S/G/Y/R/B/O	NT_023133	AC026403	166311604	3			AC073914	166121726		73670	914	17579	92163
S/G/Y/R/B/O	NT_023133	AC026403	166311604	3			AC073915	166121726		105412	0	2843	108255
S/G/Y/R/B/O	NT_023133	AC026403	166311604	3			AC122699	166450140		78981	0	19839	98820
S/G/Y/R/B/O	NT_023133	AC091972	166450140	3	chr5	NT_023133	AC008692	166585951	3	0	0	0	0
S/G/Y/R/B/O	NT_023133	AC091972	166450140	3			AC018591	166224082		120316	0	0	120316
S/G/Y/R/B/O	NT_023133	AC091972	166450140	3			AC073915	166311604		12785	2110	13222	28117
S/G/Y/R/B/O	NT_023133	AC091972	166450140	3			AC091837	166311604		32108	2358	0	34466
S/G/Y/R/B/O	NT_023133	AC008692	166585951	3	chr5	NT_023133	AC008683	166699377	3	11278	0	0	11278
S/G/Y/R/B/O	NT_023133	AC008692	166585951	3			AC018591	166699377		26778	0	0	26778
S/G/Y/R/B/O	NT_023133	AC008692	166585951	3			AC018996	166699377		10186	7574	22999	40759
S/G/Y/R/B/O	NT_023133	AC008692	166585951	3			AC091837	166699377		112501	2455	0	114956
S/G/Y/R/B/O	NT_023133	AC008683	166699377	3	chr5	NT_023133	AC112195	166802224	3	0	0	29475	29475
S/G/Y/R/B/O	NT_023133	AC008683	166699377	3			AC018996	166585951		42510	7022	8969	58501
S/G/Y/R/B/O	NT_023133	AC008683	166699377	3			AC112164	166585951		33704	0	0	33704
S/G/Y/R/B/O	NT_023133	AC112195	166802224	3	chr5	NT_023133	AC008710	166907827	3	25231	0	0	25231
S/G/Y/R/B/O	NT_023133	AC112195	166802224	3			AC011393	166907827		95018	0	0	95018
S/G/Y/R/B/O	NT_023133	AC008710	166907827	3	chr5	NT_023133	AC026729	167019949	3	60963	0	0	60963
S/G/Y/R/B/O	NT_023133	AC008710	166907827	3			AC011393	166907827		41434	0	0	41434
S/G/Y/R/B/O	NT_023133	AC008710	166907827	3			AC112167	167019949		101406	0	0	101406
S/G/Y/R/B/O	NT_023133	AC026729	167019949	3	chr5	NT_023133	AC008607	167071089	3	34157	0	0	34157
S/G/Y/R/B/O	NT_023133	AC026729	167019949	3			AC112167	166907827		69127	0	0	69127
S/G/Y/R/B/O	NT_023133	AC008607	167071089	3	chr5	NT_023133	AC091819	167117600	3	26290	0	0	26290
S/G/Y/R/B/O	NT_023133	AC091819	167117600	3	chr5	NT_023133	AC008642	167209867	3	0	0	333	333
S/G/Y/R/B/O	NT_023133	AC091819	167117600	3			AC011395	167209867		78212	0	0	78212
S/G/Y/R/B/O	NT_023133	AC008642	167209867	3	chr5	NT_023133	AC091820	167307220	3	0	0	0	0
S/G/Y/R/B/O	NT_023133	AC091820	167307220	3	chr5	NT_023133	AC008601	167320041	3	0	0	0	0
S/G/Y/R/B/O	NT_023133	AC008601	167320041	3	chr5	NT_023133	AC113372	167420544	3	2409	0	0	2409
S/G/Y/R/B/O	NT_023133	AC113372	167420544	3	chr5	NT_023133	AC011384	167468304	3	50492	0	0	50492
S/G/Y/R/B/O	NT_023133	AC011384	167468304	3	chr5	NT_023133	AC008634	167572779	3	20193	0	0	20193
S/G/Y/R/B/O	NT_023133	AC008634	167572779	3	chr5	NT_023133	AC008708	167650397	3	33690	0	0	33690
S/G/Y/R/B/O	NT_023133	AC008634	167572779	3			AC021288	167468304		46221	2651	0	48872
S/G/Y/R/B/O	NT_023133	AC008708	167650397	3	chr5	NT_023133	AC093304	167766085	3	9158	0	0	9158
S/G/Y/R/B/O	NT_023133	AC008708	167650397	3			AC021288	167572779		105892	4277	0	110169
S/G/Y/R/B/O	NT_023133	AC093304	167766085	3
S/G/Y/R/B/O	NT_023133	AC093304	167766085	3			AC009188	167650397		64163	0	0	64163
S/G/Y/R/B/O	NT_023133	AC093304	167766085	3			AC093291	167650397		45688	1984	17657	65329