Chromosome 5 - Clone Overlaps

Chromosome 5 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034766	NT_037650	NT_037651	NT_023089	NT_006576	NT_023084	NT_037652	NT_037653
NT_006547	NT_023124	NT_023085	NT_034819	NT_006679	NT_023195	NT_034769	NT_023098
NT_037654	NT_023102	NT_037655	NT_037656	NT_037657	NT_033088	NT_023081	NT_006431
NT_037658	NT_037659	NT_006713	NT_030680	NT_037660	NT_029973	NT_023148	NT_006654
NT_037661	NT_034772	NT_006899	NT_030685	NT_025702	NT_016755	NT_007072	NT_034775
NT_034776	NT_037662	NT_037663	NT_037664	NT_016714	NT_029289	NT_006859	NT_034779
NT_006788	NT_030698	NT_023133	NT_037665	NT_023132	NT_037666	NT_034860	NT_037667
NT_006519	NT_037668

NT_029289

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_029289	AC010378	139458702	3	chr5	NT_029289	AC113361	139596439	2	12636	0	0	12636
S/G/Y/R/B/O	NT_029289	AC010378	139458702	3			AC026291	139259117		61709	2449	0	64158
S/G/Y/R/B/O	NT_029289	AC010378	139458702	3			AC026687	139259117		32554	10293	0	42847
S/G/Y/R/B/O	NT_029289	AC010378	139458702	3			AC044881	139259117		16009	1793	4779	22581
S/G/Y/R/B/O	NT_029289	AC010378	139458702	3			AC108127	139259117		32354	2685	20003	55042
S/G/Y/R/B/O	NT_029289	AC113361	139596439	2	chr5	NT_029289	AC008667	139668553	3	6523	0	0	6523
S/G/Y/R/B/O	NT_029289	AC113361	139596439	2			AC026291	139458702		89520	0	0	89520
S/G/Y/R/B/O	NT_029289	AC113361	139596439	2			AC044881	139458702		73101	3200	3561	79862
S/G/Y/R/B/O	NT_029289	AC113361	139596439	2			AC108127	139458702		27115	3853	55248	86216
S/G/Y/R/B/O	NT_029289	AC008667	139668553	3	chr5	NT_029289	AC008523	139857603	3	21901	0	0	21901
S/G/Y/R/B/O	NT_029289	AC008667	139668553	3			AC026291	139857603		62821	0	0	62821
S/G/Y/R/B/O	NT_029289	AC008667	139668553	3			AC044881	139857603		41700	1758	9254	52712
S/G/Y/R/B/O	NT_029289	AC008523	139857603	3	chr5	NT_029289	AC010292	139955935	3	24165	0	0	24165
S/G/Y/R/B/O	NT_029289	AC008523	139857603	3			AC026272	139955935		19247	0	6894	26141
S/G/Y/R/B/O	NT_029289	AC010292	139955935	3	chr5	NT_029289	AC094080	139988532	3	20814	0	0	20814
S/G/Y/R/B/O	NT_029289	AC010292	139955935	3			AC011589	139857603		50047	0	1627	51674
S/G/Y/R/B/O	NT_029289	AC010292	139955935	3			AC026272	139857603		14834	1455	16673	32962
S/G/Y/R/B/O	NT_029289	AC094080	139988532	3	chr5	NT_029289	AC005575	140086310	3	0	0	0	0
S/G/Y/R/B/O	NT_029289	AC094080	139988532	3			AC011379	139955935		82334	0	0	82334
S/G/Y/R/B/O	NT_029289	AC094080	139988532	3			AC011589	139955935		39560	0	1289	40849
S/G/Y/R/B/O	NT_029289	AC094080	139988532	3			AC026272	139955935		52139	12333	23762	88234
S/G/Y/R/B/O	NT_029289	AC005575	140086310	3	chr5	NT_029289	AC011380	140134955	3	0	0	2368	2368
S/G/Y/R/B/O	NT_029289	AC005575	140086310	3			AC011379	139955935		45273	0	0	45273
S/G/Y/R/B/O	NT_029289	AC005575	140086310	3			AC026272	140134955		36160	0	0	36160
S/G/Y/R/B/O	NT_029289	AC011380	140134955	3	chr5	NT_029289	AC004634	140264095	3	2028	0	0	2028
S/G/Y/R/B/O	NT_029289	AC011380	140134955	3			AC011379	140086310		37522	0	0	37522
S/G/Y/R/B/O	NT_029289	AC011380	140134955	3			AC011379	140086310		37522	0	0	37522
S/G/Y/R/B/O	NT_029289	AC004634	140264095	3	chr5	NT_029289	AC008438	140309782	3	5554	0	0	5554
S/G/Y/R/B/O	NT_029289	AC008438	140309782	3	chr5	NT_029289	AC011399	140389938	3	0	0	35226	35226
S/G/Y/R/B/O	NT_029289	AC011399	140389938	3	chr5	NT_029289	AC116353	140528509	3	21582	0	0	21582
S/G/Y/R/B/O	NT_029289	AC011399	140389938	3			AC005214	140389938		22573	0	0	22573
S/G/Y/R/B/O	NT_029289	AC011399	140389938	3			AC010687	140309782		21553	0	0	21553
S/G/Y/R/B/O	NT_029289	AC116353	140528509	3	chr5	NT_029289	AC005609	140724539	3	30323	0	0	30323
S/G/Y/R/B/O	NT_029289	AC116353	140528509	3			AC010687	140724539		166982	0	26915	193897
S/G/Y/R/B/O	NT_029289	AC116353	140528509	3			AC011398	140724539		70975	0	0	70975
S/G/Y/R/B/O	NT_029289	AC005609	140724539	3	chr5	NT_029289	AC008468	140854635	3	93006	0	0	93006
S/G/Y/R/B/O	NT_029289	AC005609	140724539	3			AC010687	140854635		30312	0	0	30312
S/G/Y/R/B/O	NT_029289	AC005609	140724539	3			AC044871	140854635		12146	0	3821	15967
S/G/Y/R/B/O	NT_029289	AC008468	140854635	3	chr5	NT_029289	AC010223	140878666	3	0	0	0	0
S/G/Y/R/B/O	NT_029289	AC008468	140854635	3			AC044871	140724539		12147	0	7652	19799
S/G/Y/R/B/O	NT_029289	AC010223	140878666	3	chr5	NT_029289	AC005754	141025150	3	9735	0	0	9735
S/G/Y/R/B/O	NT_029289	AC010223	140878666	3			AC008688	141025150		79041	0	0	79041
S/G/Y/R/B/O	NT_029289	AC010223	140878666	3			AC025436	141025150		76507	0	0	76507
S/G/Y/R/B/O	NT_029289	AC010223	140878666	3			AC044871	141025150		65554	4277	5715	75546
S/G/Y/R/B/O	NT_029289	AC005754	141025150	3	chr5	NT_029289	AC074130	141141341	3	0	1031	0	1031
S/G/Y/R/B/O	NT_029289	AC005754	141025150	3			AC008727	141025150		19145	0	0	19145
S/G/Y/R/B/O	NT_029289	AC005754	141025150	3			AC025436	140878666		117666	0	0	117666
S/G/Y/R/B/O	NT_029289	AC074130	141141341	3	chr5	NT_029289	AC005752	141152309	3	0	1057	0	1057
S/G/Y/R/B/O	NT_029289	AC074130	141141341	3			AC008727	141025150		12001	0	0	12001
S/G/Y/R/B/O	NT_029289	AC005752	141152309	3	chr5	NT_029289	AC005618	141252323	3	0	0	0	0
S/G/Y/R/B/O	NT_029289	AC005752	141152309	3			AC008579	141025150		37318	0	30729	68047
S/G/Y/R/B/O	NT_029289	AC005752	141152309	3			AC008727	141025150		73830	0	0	73830
S/G/Y/R/B/O	NT_029289	AC005618	141252323	3	chr5	NT_029289	AC008781	141427722	3	0	0	0	0
S/G/Y/R/B/O	NT_029289	AC005618	141252323	3			AC008890	141141341		77113	1695	14692	93500
S/G/Y/R/B/O	NT_029289	AC008781	141427722	3	chr5	NT_029289	AC022420	141613616	3	11060	0	0	11060
S/G/Y/R/B/O	NT_029289	AC008781	141427722	3			AC005366	141141341		68046	0	0	68046
S/G/Y/R/B/O	NT_029289	AC008781	141427722	3			AC005368	141141341		117679	0	0	117679
S/G/Y/R/B/O	NT_029289	AC008781	141427722	3			AC008439	141141341		33886	2136	1805	37827
S/G/Y/R/B/O	NT_029289	AC008781	141427722	3			AC008890	141141341		44712	3544	1519	49775
S/G/Y/R/B/O	NT_029289	AC022420	141613616	3	chr5	NT_029289	AC005753	141694480	3	0	1877	0	1877
S/G/Y/R/B/O	NT_029289	AC022420	141613616	3			AC005368	141613616		12012	0	0	12012
S/G/Y/R/B/O	NT_029289	AC022420	141613616	3			AC008439	141694480		34021	4811	31668	70500
S/G/Y/R/B/O	NT_029289	AC022420	141613616	3			AC010484	141427722		42007	5512	659	48178
S/G/Y/R/B/O	NT_029289	AC005753	141694480	3	chr5	NT_029289	AC094107	141813054	3	63079	0	0	63079
S/G/Y/R/B/O	NT_029289	AC005753	141694480	3			AC008439	141427722		57652	2927	10505	71084
S/G/Y/R/B/O	NT_029289	AC005753	141694480	3			AC010484	141427722		81519	2577	21348	105444
S/G/Y/R/B/O	NT_029289	AC094107	141813054	3	chr5	NT_029289	AC005740	141844536	3	62721	0	0	62721
S/G/Y/R/B/O	NT_029289	AC094107	141813054	3			AC010484	141694480		25143	2594	21334	49071
S/G/Y/R/B/O	NT_029289	AC005740	141844536	3	chr5	NT_029289	AC011401	142031316	3	56683	0	0	56683
S/G/Y/R/B/O	NT_029289	AC005740	141844536	3			AC010264	141694480		54751	9748	15240	79739
S/G/Y/R/B/O	NT_029289	AC011401	142031316	3	chr5	NT_029289	AC091825	142123270	3	50550	0	0	50550
S/G/Y/R/B/O	NT_029289	AC011401	142031316	3			AC004752	141813054		67357	0	0	67357
S/G/Y/R/B/O	NT_029289	AC091825	142123270	3	chr5	NT_029289	AC010317	142314331	3	0	0	9165	9165
S/G/Y/R/B/O	NT_029289	AC091825	142123270	3			AC004752	142123270		66567	0	0	66567
S/G/Y/R/B/O	NT_029289	AC010317	142314331	3	chr5	NT_029289	AC005215	142465800	3	30952	0	0	30952
S/G/Y/R/B/O	NT_029289	AC010317	142314331	3			AC008729	142465800		35520	4266	33132	72918
S/G/Y/R/B/O	NT_029289	AC010317	142314331	3			AC010489	142465800		11104	0	0	11104
S/G/Y/R/B/O	NT_029289	AC010317	142314331	3			AC021081	142465800		71756	0	0	71756
S/G/Y/R/B/O	NT_029289	AC005215	142465800	3	chr5	NT_029289	AC005370	142545158	3	0	0	237	237
S/G/Y/R/B/O	NT_029289	AC005215	142465800	3			AC010489	142314331		90281	0	0	90281
S/G/Y/R/B/O	NT_029289	AC005215	142465800	3			AC016560	142314331		18793	0	38444	57237
S/G/Y/R/B/O	NT_029289	AC005370	142545158	3	chr5	NT_029289	AC005592	142621337	3	0	1656	0	1656
S/G/Y/R/B/O	NT_029289	AC005370	142545158	3			AC010489	142621337		55769	0	0	55769
S/G/Y/R/B/O	NT_029289	AC005370	142545158	3			AC016560	142621337		73776	0	1964	75740
S/G/Y/R/B/O	NT_029289	AC005370	142545158	3			AC091822	142621337		25041	0	4146	29187
S/G/Y/R/B/O	NT_029289	AC005592	142621337	3	chr5	NT_029289	AC008533	142710374	3	20155	0	0	20155
S/G/Y/R/B/O	NT_029289	AC005592	142621337	3			AC011367	142710374		11661	5143	0	16804
S/G/Y/R/B/O	NT_029289	AC005592	142621337	3			AC016560	142710374		28583	0	0	28583
S/G/Y/R/B/O	NT_029289	AC005592	142621337	3			AC091822	142710374		33884	1915	7726	43525
S/G/Y/R/B/O	NT_029289	AC008533	142710374	3	chr5	NT_029289	AC012630	142944949	3	6337	0	0	6337
S/G/Y/R/B/O	NT_029289	AC008533	142710374	3			AC011367	142621337		130065	9173	19322	158560
S/G/Y/R/B/O	NT_029289	AC008533	142710374	3			AC011371	142621337		140801	0	1966	142767
S/G/Y/R/B/O	NT_029289	AC012630	142944949	3	chr5	NT_029289	AC005348	143008658	3	44014	0	0	44014
S/G/Y/R/B/O	NT_029289	AC012630	142944949	3			AC011371	142710374		26476	0	0	26476
S/G/Y/R/B/O	NT_029289	AC005348	143008658	3	chr5	NT_029289	AC005574	143048708	3	0	407	0	407
S/G/Y/R/B/O	NT_029289	AC005574	143048708	3	chr5	NT_029289	AC004782	143082041	3	3388	0	0	3388
S/G/Y/R/B/O	NT_029289	AC004782	143082041	3	chr5	NT_029289	AC091925	143263358	3	18946	0	0	18946
S/G/Y/R/B/O	NT_029289	AC004782	143082041	3	chrX	NT_038058	AL928602	51470918	1	20978	2300	2542	25820
S/G/Y/R/B/O	NT_029289	AC004782	143082041	3			AC012634	143048708		155494	0	0	155494
S/G/Y/R/B/O	NT_029289	AC091925	143263358	3	chr5	NT_029289	AC010284	143409074	3	12498	0	0	12498
S/G/Y/R/B/O	NT_029289	AC091925	143263358	3			AC005601	143082041		38399	0	0	38399
S/G/Y/R/B/O	NT_029289	AC091925	143263358	3			AC012634	143409074		100869	0	0	100869
S/G/Y/R/B/O	NT_029289	AC010284	143409074	3	chr5	NT_029289	AC016598	143423964	3	0	0	0	0
S/G/Y/R/B/O	NT_029289	AC016598	143423964	3	chr5	NT_029289	AC010229	143581188	3	28768	0	0	28768
S/G/Y/R/B/O	NT_029289	AC016598	143423964	3			AC008645	143263358		104357	0	0	104357
S/G/Y/R/B/O	NT_029289	AC010229	143581188	3	chr5	NT_029289	AC008696	143622913	3	10642	0	0	10642
S/G/Y/R/B/O	NT_029289	AC010229	143581188	3	chrX	NT_038058	AL928602	51470918	1	11726	7859	9637	29222
S/G/Y/R/B/O	NT_029289	AC010229	143581188	3			AC008645	51470918		11756	0	0	11756
S/G/Y/R/B/O	NT_029289	AC010229	143581188	3			AC008656	51470918		42194	0	0	42194
S/G/Y/R/B/O	NT_029289	AC008696	143622913	3	chr5	NT_029289	AC025765	143767933	3	3946	0	0	3946
S/G/Y/R/B/O	NT_029289	AC008696	143622913	3	chrX	NT_038058	AL928602	51470918	1	33458	8323	14320	56101
S/G/Y/R/B/O	NT_029289	AC008696	143622913	3			AC024479	143581188		58693	4278	0	62971
S/G/Y/R/B/O	NT_029289	AC008696	143622913	3			AC108086	143767933		92003	0	0	92003
S/G/Y/R/B/O	NT_029289	AC025765	143767933	3	chr5	NT_029289	AC008407	143982502	3	24357	0	0	24357
S/G/Y/R/B/O	NT_029289	AC025765	143767933	3	chrX	NT_038058	AL928602	51470918	1	43468	11145	9884	64497
S/G/Y/R/B/O	NT_029289	AC025765	143767933	3			AC024479	143622913		58064	2248	17582	77894
S/G/Y/R/B/O	NT_029289	AC025765	143767933	3			AC025981	143622913		28022	0	6642	34664
S/G/Y/R/B/O	NT_029289	AC025765	143767933	3			AC068563	143622913		112266	0	0	112266
S/G/Y/R/B/O	NT_029289	AC025765	143767933	3			AC108086	143622913		16500	0	0	16500
S/G/Y/R/B/O	NT_029289	AC008407	143982502	3	chr5	NT_029289	AC008383	144036990	3	0	0	36518	36518
S/G/Y/R/B/O	NT_029289	AC008383	144036990	3	chr5	NT_029289	AC008652	144209417	3	41543	0	0	41543
S/G/Y/R/B/O	NT_029289	AC008383	144036990	3	chrX	NT_038058	AL928602	51470918	1	16521	19025	4979	40525
S/G/Y/R/B/O	NT_029289	AC008383	144036990	3			AC025981	144209417		14098	1721	6970	22789
S/G/Y/R/B/O	NT_029289	AC008652	144209417	3	chr5	NT_029289	AC010584	144339798	3	51964	0	0	51964
S/G/Y/R/B/O	NT_029289	AC010584	144339798	3	chr5	NT_029289	AC109441	144400963	3	55330	0	0	55330
S/G/Y/R/B/O	NT_029289	AC109441	144400963	3	chr5	NT_029289	AC008716	144430326	3	5193	0	0	5193
S/G/Y/R/B/O	NT_029289	AC109441	144400963	3			AC019335	144339798		10794	0	0	10794
S/G/Y/R/B/O	NT_029289	AC008716	144430326	3	chr5	NT_029289	AC011341	144614915	3	0	0	36506	36506
S/G/Y/R/B/O	NT_029289	AC008716	144430326	3			AC008473	144339798		12139	0	0	12139
S/G/Y/R/B/O	NT_029289	AC008716	144430326	3			AC019335	144614915		74364	0	12473	86837
S/G/Y/R/B/O	NT_029289	AC011341	144614915	3	chr5	NT_029289	AC005349	144629083	3	0	1376	0	1376
S/G/Y/R/B/O	NT_029289	AC005349	144629083	3	chr5	NT_029289	AC005194	144683829	3	0	760	0	760
S/G/Y/R/B/O	NT_029289	AC005194	144683829	3	chr5	NT_029289	AC011353	144790511	3	0	0	0	0
S/G/Y/R/B/O	NT_029289	AC011353	144790511	3	chr5	NT_029289	AC005371	144872037	3	0	0	0	0
S/G/Y/R/B/O	NT_029289	AC005371	144872037	3	chr5	NT_029289	AC008689	145004654	3	80406	0	0	80406
S/G/Y/R/B/O	NT_029289	AC008689	145004654	3	chr5	NT_029289	AC005350	145063015	3	15445	0	0	15445
S/G/Y/R/B/O	NT_029289	AC008689	145004654	3	chr5	NT_029289	AC122706	145145636	3	37207	0	0	37207
S/G/Y/R/B/O	NT_029289	AC005350	145063015	3	chr5	NT_029289	AC006503	145126211	3	0	984	0	984
S/G/Y/R/B/O	NT_029289	AC005350	145063015	3	chr5	NT_029289	AC122706	145145636	3	78600	0	0	78600
S/G/Y/R/B/O	NT_029289	AC005350	145063015	3	chr5	NT_029289	AC132803	145179186	1	25902	1342	6414	33658
S/G/Y/R/B/O	NT_029289	AC006503	145126211	3	chr5	NT_029289	AC122706	145145636	3	20361	0	0	20361
S/G/Y/R/B/O	NT_029289	AC006503	145126211	3	chr5	NT_029289	AC132803	145179186	1	18300	0	0	18300
S/G/Y/R/B/O	NT_029289	AC122706	145145636	3	chr5	NT_029289	AC132803	145179186	1	27503	0	51614	79117
S/G/Y/R/B/O	NT_029289	AC122706	145145636	3	chr5	NT_029289	AC005350	145063015	3	78600	0	0	78600
S/G/Y/R/B/O	NT_029289	AC122706	145145636	3	chr5	NT_029289	AC008689	145004654	3	37207	0	0	37207
S/G/Y/R/B/O	NT_029289	AC122706	145145636	3	chr5	NT_029289	AC008717	145199704	1	24616	1976	4375	30967
S/G/Y/R/B/O	NT_029289	AC132803	145179186	1	chr5	NT_029289	AC008717	145199704	1	14978	4111	25571	44660
S/G/Y/R/B/O	NT_029289	AC132803	145179186	1	chr5	NT_029289	AC005350	145063015	3	25902	1342	6414	33658
S/G/Y/R/B/O	NT_029289	AC132803	145179186	1	chr5	NT_029289	AC006503	145126211	3	18300	0	0	18300
S/G/Y/R/B/O	NT_029289	AC132803	145179186	1			AC023666	145199704		15196	0	1510	16706
S/G/Y/R/B/O	NT_029289	AC008717	145199704	1	chr5	NT_029289	AC008715	145225403	3	26239	0	2325	28564
S/G/Y/R/B/O	NT_029289	AC008717	145199704	1	chr5	NT_029289	AC122706	145145636	3	24616	1976	4375	30967
S/G/Y/R/B/O	NT_029289	AC008717	145199704	1			AC018453	145225403		26236	0	2325	28561
S/G/Y/R/B/O	NT_029289	AC008717	145199704	1			AC023666	145225403		13415	0	30568	43983
S/G/Y/R/B/O	NT_029289	AC008715	145225403	3	chr5	NT_029289	AC008700	145347140	3	34329	0	0	34329
S/G/Y/R/B/O	NT_029289	AC008715	145225403	3			AC018453	145199704		30530	1281	12888	44699
S/G/Y/R/B/O	NT_029289	AC008715	145225403	3			AC018544	145199704		22955	2124	60750	85829
S/G/Y/R/B/O	NT_029289	AC008715	145225403	3			AC023666	145199704		48517	1635	25177	75329
S/G/Y/R/B/O	NT_029289	AC008700	145347140	3	chr5	NT_029289	AC008631	145444730	3	11243	0	0	11243
S/G/Y/R/B/O	NT_029289	AC008700	145347140	3			AC018453	145225403		60847	0	0	60847
S/G/Y/R/B/O	NT_029289	AC008700	145347140	3			AC018544	145225403		35405	0	0	35405
S/G/Y/R/B/O	NT_029289	AC008700	145347140	3			AC023666	145225403		19823	5121	0	24944
S/G/Y/R/B/O	NT_029289	AC008631	145444730	3	chr5	NT_029289	AC011411	145541331	3	12650	0	0	12650
S/G/Y/R/B/O	NT_029289	AC011411	145541331	3	chr5	NT_029289	AC011355	145692405	3	38732	0	0	38732
S/G/Y/R/B/O	NT_029289	AC011355	145692405	3	chr5	NT_029289	AC011359	145767834	3	12626	0	0	12626
S/G/Y/R/B/O	NT_029289	AC011355	145692405	3			AC024507	145541331		35848	7362	1211	44421
S/G/Y/R/B/O	NT_029289	AC011359	145767834	3	chr5	NT_029289	AC005351	145951095	3	31047	0	0	31047
S/G/Y/R/B/O	NT_029289	AC011359	145767834	3			AC024507	145692405		63629	9640	8837	82106
S/G/Y/R/B/O	NT_029289	AC005351	145951095	3	chr5	NT_029289	AC005216	145967852	3	0	1077	0	1077
S/G/Y/R/B/O	NT_029289	AC005216	145967852	3
S/G/Y/R/B/O	NT_029289	AC005216	145967852	3			AC091887	145951095		99612	0	0	99612