|
|
Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
| |
|
|
|
|
Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_023098 | AC036172 | 43351306 | 1 | chr5 | NT_023098 | AC116343 | 43459569 | 3 | 41973 | 7175 | 9919 | 59067 |
S/G/Y/R/B/O |
NT_023098 | AC036172 | 43351306 | 1 | chr5 | NT_023098 | AC093225 | 43608764 | 3 | 42801 | 14832 | 6237 | 63870 |
S/G/Y/R/B/O |
NT_023098 | AC036172 | 43351306 | 1 |   |   | AC136590 | 131053270 | | 52590 | 9252 | 14091 | 75933 |
S/G/Y/R/B/O |
NT_023098 | AC116343 | 43459569 | 3 | chr5 | NT_023098 | AC093225 | 43608764 | 3 | 42960 | 0 | 0 | 42960 |
S/G/Y/R/B/O |
NT_023098 | AC116343 | 43459569 | 3 |   |   | AC114948 | 43608764 | | 29296 | 0 | 0 | 29296 |
S/G/Y/R/B/O |
NT_023098 | AC116343 | 43459569 | 3 |   |   | AC136590 | 43608764 | | 68882 | 0 | 80925 | 149807 |
S/G/Y/R/B/O |
NT_023098 | AC093225 | 43608764 | 3 | chr5 | NT_023098 | AC114941 | 43678437 | 3 | 12224 | 0 | 0 | 12224 |
S/G/Y/R/B/O |
NT_023098 | AC093225 | 43608764 | 3 | chr5 | NT_023098 | AC036172 | 43351306 | 1 | 42801 | 14832 | 6237 | 63870 |
S/G/Y/R/B/O |
NT_023098 | AC093225 | 43608764 | 3 |   |   | AC136590 | 43459569 | | 77224 | 0 | 0 | 77224 |
S/G/Y/R/B/O |
NT_023098 | AC114941 | 43678437 | 3 | chr5 | NT_023098 | AC113368 | 43825494 | 3 | 25206 | 0 | 0 | 25206 |
S/G/Y/R/B/O |
NT_023098 | AC113368 | 43825494 | 3 | chr5 | NT_023098 | AC008945 | 43965576 | 3 | 0 | 0 | 75680 | 75680 |
S/G/Y/R/B/O |
NT_023098 | AC008945 | 43965576 | 3 | chr5 | NT_023098 | AC008875 | 44082553 | 3 | 53708 | 0 | 0 | 53708 |
S/G/Y/R/B/O |
NT_023098 | AC008945 | 43965576 | 3 |   |   | AC093260 | 44082553 | | 110714 | 0 | 0 | 110714 |
S/G/Y/R/B/O |
NT_023098 | AC008875 | 44082553 | 3 | chr5 | NT_023098 | AC025171 | 44195940 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_023098 | AC008875 | 44082553 | 3 |   |   | AC019232 | 43965576 | | 33580 | 12427 | 13949 | 59956 |
S/G/Y/R/B/O |
NT_023098 | AC025171 | 44195940 | 3 | chr5 | NT_023098 | AC106800 | 44320281 | 3 | 0 | 0 | 46116 | 46116 |
S/G/Y/R/B/O |
NT_023098 | AC025171 | 44195940 | 3 |   |   | AC019190 | 43965576 | | 45824 | 2440 | 5132 | 53396 |
S/G/Y/R/B/O |
NT_023098 | AC106800 | 44320281 | 3 | chr5 | NT_023098 | AC114947 | 44451408 | 3 | 66629 | 0 | 0 | 66629 |
S/G/Y/R/B/O |
NT_023098 | AC106800 | 44320281 | 3 |   |   | AC019190 | 44320281 | | 26895 | 3954 | 43669 | 74518 |
S/G/Y/R/B/O |
NT_023098 | AC114947 | 44451408 | 3 | chr5 | NT_023098 | AC025457 | 44529073 | 3 | 3026 | 0 | 0 | 3026 |
S/G/Y/R/B/O |
NT_023098 | AC025457 | 44529073 | 3 | chr5 | NT_023098 | AC114956 | 44666781 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_023098 | AC025457 | 44529073 | 3 |   |   | AC113561 | 44320281 | | 107376 | 0 | 0 | 107376 |
S/G/Y/R/B/O |
NT_023098 | AC025457 | 44529073 | 3 |   |   | AC114310 | 44320281 | | 111232 | 0 | 0 | 111232 |
S/G/Y/R/B/O |
NT_023098 | AC114956 | 44666781 | 3 | chr5 | NT_023098 | AC010435 | 44755704 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_023098 | AC010435 | 44755704 | 3 | chr5 | NT_023098 | AC116336 | 44896673 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_023098 | AC116336 | 44896673 | 3 | chr5 | NT_023098 | AC104119 | 45009601 | 3 | 60212 | 0 | 0 | 60212 |
S/G/Y/R/B/O |
NT_023098 | AC116336 | 44896673 | 3 |   |   | AC113413 | 45009601 | | 73248 | 0 | 0 | 73248 |
S/G/Y/R/B/O |
NT_023098 | AC104119 | 45009601 | 3 | chr5 | NT_023098 | AC113165 | 45117458 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_023098 | AC113165 | 45117458 | 3 | chr5 | NT_023098 | AC114929 | 45207447 | 3 | 0 | 0 | 44466 | 44466 |
S/G/Y/R/B/O |
NT_023098 | AC114929 | 45207447 | 3 | chr5 | NT_023098 | AC093531 | 45264690 | 3 | 20159 | 0 | 0 | 20159 |
S/G/Y/R/B/O |
NT_023098 | AC093531 | 45264690 | 3 | chr5 | NT_023098 | AC093537 | 45408305 | 3 | 34019 | 0 | 0 | 34019 |
S/G/Y/R/B/O |
NT_023098 | AC093531 | 45264690 | 3 |   |   | AC016979 | 45117458 | | 18065 | 0 | 707 | 18772 |
S/G/Y/R/B/O |
NT_023098 | AC093531 | 45264690 | 3 |   |   | AC018383 | 45117458 | | 34018 | 0 | 0 | 34018 |
S/G/Y/R/B/O |
NT_023098 | AC093537 | 45408305 | 3 | chr5 | NT_023098 | AC093289 | 45544090 | 3 | 9686 | 0 | 0 | 9686 |
S/G/Y/R/B/O |
NT_023098 | AC093537 | 45408305 | 3 |   |   | AC016979 | 45207447 | | 137174 | 0 | 16775 | 153949 |
S/G/Y/R/B/O |
NT_023098 | AC093537 | 45408305 | 3 |   |   | AC018383 | 45207447 | | 164139 | 2492 | 1157 | 167788 |
S/G/Y/R/B/O |
NT_023098 | AC093289 | 45544090 | 3 | chr5 | NT_023098 | AC116310 | 45694360 | 3 | 74491 | 0 | 0 | 74491 |
S/G/Y/R/B/O |
NT_023098 | AC093289 | 45544090 | 3 |   |   | AC022990 | 45264690 | | 122178 | 2517 | 0 | 124695 |
S/G/Y/R/B/O |
NT_023098 | AC116310 | 45694360 | 3 | chr5 | NT_023098 | AC093292 | 45769563 | 3 | 36749 | 0 | 0 | 36749 |
S/G/Y/R/B/O |
NT_023098 | AC116310 | 45694360 | 3 |   |   | AC022990 | 45694360 | | 45605 | 1913 | 20186 | 67704 |
S/G/Y/R/B/O |
NT_023098 | AC093292 | 45769563 | 3 | chr5 | NT_023098 | AC093297 | 45865866 | 3 | 0 | 0 | 53107 | 53107 |
S/G/Y/R/B/O |
NT_023098 | AC093292 | 45769563 | 3 |   |   | AC012663 | 45769563 | | 48800 | 0 | 3403 | 52203 |
S/G/Y/R/B/O |
NT_023098 | AC093292 | 45769563 | 3 |   |   | AC012663 | 45769563 | | 48800 | 0 | 3403 | 52203 |
S/G/Y/R/B/O |
NT_023098 | AC093297 | 45865866 | 3 | chr5 | NT_023098 | AC116331 | 46027966 | 3 | 20243 | 0 | 0 | 20243 |
S/G/Y/R/B/O |
NT_023098 | AC093297 | 45865866 | 3 |   |   | AC012663 | 45694360 | | 116582 | 0 | 21015 | 137597 |
S/G/Y/R/B/O |
NT_023098 | AC116331 | 46027966 | 3 | chr5 | NT_023098 | AC118462 | 46112945 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_023098 | AC116331 | 46027966 | 3 |   |   | AC012663 | 46027966 | | 30588 | 0 | 0 | 30588 |
S/G/Y/R/B/O |
NT_023098 | AC118462 | 46112945 | 3 | chr5 | NT_023098 | AC114954 | 46113397 | 3 | 8873 | 0 | 0 | 8873 |
S/G/Y/R/B/O |
NT_023098 | AC114954 | 46113397 | 3 | chr5 | NT_023098 | AC116350 | 46244619 | 3 | 26758 | 0 | 0 | 26758 |
S/G/Y/R/B/O |
NT_023098 | AC116350 | 46244619 | 3 | chr5 | NT_023098 | AC099514 | 46427628 | 3 | 45534 | 0 | 0 | 45534 |
S/G/Y/R/B/O |
NT_023098 | AC116350 | 46244619 | 3 |   |   | AC026621 | 46112945 | | 29983 | 0 | 0 | 29983 |
S/G/Y/R/B/O |
NT_023098 | AC099514 | 46427628 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_023098 | AC099514 | 46427628 | 3 |   |   | AC026621 | 46113397 | | 118710 | 0 | 4162 | 122872 |
| |
|
|
|