Chromosome 5 - Clone Overlaps

Chromosome 5 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034766	NT_037650	NT_037651	NT_023089	NT_006576	NT_023084	NT_037652	NT_037653
NT_006547	NT_023124	NT_023085	NT_034819	NT_006679	NT_023195	NT_034769	NT_023098
NT_037654	NT_023102	NT_037655	NT_037656	NT_037657	NT_033088	NT_023081	NT_006431
NT_037658	NT_037659	NT_006713	NT_030680	NT_037660	NT_029973	NT_023148	NT_006654
NT_037661	NT_034772	NT_006899	NT_030685	NT_025702	NT_016755	NT_007072	NT_034775
NT_034776	NT_037662	NT_037663	NT_037664	NT_016714	NT_029289	NT_006859	NT_034779
NT_006788	NT_030698	NT_023133	NT_037665	NT_023132	NT_037666	NT_034860	NT_037667
NT_006519	NT_037668

NT_029973

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_029973	AC020930	87188511	3	chr5	NT_029973	AC008839	87295671	3	47317	0	0	47317
S/G/Y/R/B/O	NT_029973	AC020930	87188511	3			AC021141	87295671		82574	0	9861	92435
S/G/Y/R/B/O	NT_029973	AC008839	87295671	3	chr5	NT_029973	AC116335	87352764	3	39825	0	0	39825
S/G/Y/R/B/O	NT_029973	AC008839	87295671	3			AC021141	87188511		58163	1909	751	60823
S/G/Y/R/B/O	NT_029973	AC116335	87352764	3	chr5	NT_029973	AC074216	87401404	1	14873	0	35514	50387
S/G/Y/R/B/O	NT_029973	AC116335	87352764	3			AC021141	87295671		10208	1909	6060	18177
S/G/Y/R/B/O	NT_029973	AC074216	87401404	1	chr5	NT_029973	AC093241	87441227	3	0	0	10282	10282
S/G/Y/R/B/O	NT_029973	AC074216	87401404	1			AC021141	87188511		58438	1902	7568	67908
S/G/Y/R/B/O	NT_029973	AC093241	87441227	3	chr5	NT_029973	AC114971	87554375	3	113129	0	0	113129
S/G/Y/R/B/O	NT_029973	AC093241	87441227	3			AC010780	87352764		42327	0	5032	47359
S/G/Y/R/B/O	NT_029973	AC114971	87554375	3	chr5	NT_029973	AC010243	87699158	3	21334	0	0	21334
S/G/Y/R/B/O	NT_029973	AC114971	87554375	3			AC010780	87699158		67464	2808	6528	76800
S/G/Y/R/B/O	NT_029973	AC114971	87554375	3			AC013656	87699158		15996	0	11393	27389
S/G/Y/R/B/O	NT_029973	AC010243	87699158	3	chr5	NT_029973	AC016555	87856682	3	79564	0	0	79564
S/G/Y/R/B/O	NT_029973	AC010243	87699158	3			AC010780	87441227		19015	0	0	19015
S/G/Y/R/B/O	NT_029973	AC010243	87699158	3			AC010897	87441227		75513	0	0	75513
S/G/Y/R/B/O	NT_029973	AC010243	87699158	3			AC013656	87441227		81521	1491	18998	102010
S/G/Y/R/B/O	NT_029973	AC016555	87856682	3	chr5	NT_029973	AC114978	87931864	3	0	0	0	0
S/G/Y/R/B/O	NT_029973	AC016555	87856682	3			AC010897	87699158		119073	0	8946	128019
S/G/Y/R/B/O	NT_029973	AC016555	87856682	3			AC013656	87699158		33300	0	4743	38043
S/G/Y/R/B/O	NT_029973	AC114978	87931864	3	chr5	NT_029973	AC091826	87966580	3	0	0	0	0
S/G/Y/R/B/O	NT_029973	AC091826	87966580	3	chr5	NT_029973	AC008526	88065254	3	25075	0	0	25075
S/G/Y/R/B/O	NT_029973	AC091826	87966580	3			AC010897	88065254		13440	0	0	13440
S/G/Y/R/B/O	NT_029973	AC091826	87966580	3			AC013617	88065254		47463	2609	0	50072
S/G/Y/R/B/O	NT_029973	AC091826	87966580	3			AC087315	88065254		75912	0	0	75912
S/G/Y/R/B/O	NT_029973	AC008526	88065254	3	chr5	NT_029973	AC012604	88233497	3	2092	0	0	2092
S/G/Y/R/B/O	NT_029973	AC012604	88233497	3	chr5	NT_029973	AC026701	88236966	3	3475	0	0	3475
S/G/Y/R/B/O	NT_029973	AC026701	88236966	3	chr5	NT_029973	AC008525	88320829	3	55330	0	0	55330
S/G/Y/R/B/O	NT_029973	AC026701	88236966	3			AC008487	88236966		21637	2766	54887	79290
S/G/Y/R/B/O	NT_029973	AC026701	88236966	3			AC044843	88233497		16042	0	0	16042
S/G/Y/R/B/O	NT_029973	AC026701	88236966	3			AC094090	88233497		60586	0	6815	67401
S/G/Y/R/B/O	NT_029973	AC008525	88320829	3	chr5	NT_029973	AC008835	88388674	3	9682	0	0	9682
S/G/Y/R/B/O	NT_029973	AC008525	88320829	3			AC008487	88233497		21620	2758	27829	52207
S/G/Y/R/B/O	NT_029973	AC008525	88320829	3			AC044843	88236966		62633	2673	1017	66323
S/G/Y/R/B/O	NT_029973	AC008525	88320829	3			AC094090	88236966		109818	0	12439	122257
S/G/Y/R/B/O	NT_029973	AC008835	88388674	3	chr5	NT_029973	AC116339	88508028	3	31176	0	0	31176
S/G/Y/R/B/O	NT_029973	AC008835	88388674	3			AC016547	88320829		50959	0	6443	57402
S/G/Y/R/B/O	NT_029973	AC008835	88388674	3			AC019295	88320829		103215	0	0	103215
S/G/Y/R/B/O	NT_029973	AC008835	88388674	3			AC044843	88320829		49421	1681	0	51102
S/G/Y/R/B/O	NT_029973	AC008835	88388674	3			AC083781	88320829		99988	2700	662	103350
S/G/Y/R/B/O	NT_029973	AC008835	88388674	3			AC094090	88320829		17765	0	0	17765
S/G/Y/R/B/O	NT_029973	AC116339	88508028	3	chr5	NT_029973	AC010259	88551529	3	41799	0	0	41799
S/G/Y/R/B/O	NT_029973	AC116339	88508028	3			AC009990	88388674		14716	0	0	14716
S/G/Y/R/B/O	NT_029973	AC116339	88508028	3			AC019295	88551529		73189	1490	0	74679
S/G/Y/R/B/O	NT_029973	AC116339	88508028	3			AC083781	88551529		74609	0	0	74609
S/G/Y/R/B/O	NT_029973	AC010259	88551529	3	chr5	NT_029973	AC010596	88705205	3	76547	0	0	76547
S/G/Y/R/B/O	NT_029973	AC010259	88551529	3			AC009990	88551529		159760	0	0	159760
S/G/Y/R/B/O	NT_029973	AC010259	88551529	3			AC019295	88705205		55672	0	0	55672
S/G/Y/R/B/O	NT_029973	AC010259	88551529	3			AC083781	88705205		51990	0	1696	53686
S/G/Y/R/B/O	NT_029973	AC010596	88705205	3	chr5	NT_029973	AC122721	88793843	3	53938	0	0	53938
S/G/Y/R/B/O	NT_029973	AC010596	88705205	3			AC009990	88508028		67927	0	0	67927
S/G/Y/R/B/O	NT_029973	AC122721	88793843	3	chr5	NT_029973	AC010430	88846346	3	31406	0	0	31406
S/G/Y/R/B/O	NT_029973	AC122721	88793843	3			AC008504	88793843		43800	0	0	43800
S/G/Y/R/B/O	NT_029973	AC010430	88846346	3	chr5	NT_029973	AC008931	88903488	3	4415	0	0	4415
S/G/Y/R/B/O	NT_029973	AC010430	88846346	3			AC008504	88705205		56403	0	0	56403
S/G/Y/R/B/O	NT_029973	AC008931	88903488	3	chr5	NT_029973	AC074131	89039465	3	0	0	0	0
S/G/Y/R/B/O	NT_029973	AC074131	89039465	3	chr5	NT_029973	AC108117	89141037	3	64192	0	0	64192
S/G/Y/R/B/O	NT_029973	AC108117	89141037	3	chr5	NT_029973	AC122700	89175564	3	60665	0	0	60665
S/G/Y/R/B/O	NT_029973	AC108117	89141037	3			AC093254	89039465		18337	2888	0	21225
S/G/Y/R/B/O	NT_029973	AC108117	89141037	3			AC093254	89039465		18337	2888	0	21225
S/G/Y/R/B/O	NT_029973	AC122700	89175564	3	chr5	NT_029973	AC112179	89293802	3	0	0	0	0
S/G/Y/R/B/O	NT_029973	AC122700	89175564	3			AC017114	89175564		19488	0	0	19488
S/G/Y/R/B/O	NT_029973	AC122700	89175564	3			AC093254	89175564		31873	0	19082	50955
S/G/Y/R/B/O	NT_029973	AC112179	89293802	3	chr5	NT_029973	AC008448	89399323	3	52374	0	0	52374
S/G/Y/R/B/O	NT_029973	AC112179	89293802	3			AC017114	89399323		67572	4010	12636	84218
S/G/Y/R/B/O	NT_029973	AC112179	89293802	3			AC093254	89399323		27971	0	19079	47050
S/G/Y/R/B/O	NT_029973	AC008448	89399323	3	chr5	NT_029973	AC113167	89503731	3	87361	0	0	87361
S/G/Y/R/B/O	NT_029973	AC008448	89399323	3			AC010961	89399323		66401	0	0	66401
S/G/Y/R/B/O	NT_029973	AC008448	89399323	3			AC017114	89399323		30726	8329	31851	70906
S/G/Y/R/B/O	NT_029973	AC113167	89503731	3	chr5	NT_029973	AC010599	89556552	3	16271	0	0	16271
S/G/Y/R/B/O	NT_029973	AC113167	89503731	3			AC010961	89556552		119221	0	0	119221
S/G/Y/R/B/O	NT_029973	AC113167	89503731	3			AC017114	89556552		22575	4026	0	26601
S/G/Y/R/B/O	NT_029973	AC010599	89556552	3	chr5	NT_029973	AC008903	89654692	3	98105	0	0	98105
S/G/Y/R/B/O	NT_029973	AC010599	89556552	3			AC010961	89654692		31785	0	0	31785
S/G/Y/R/B/O	NT_029973	AC010599	89556552	3			AC026804	89654692		47137	0	0	47137
S/G/Y/R/B/O	NT_029973	AC010599	89556552	3			AC073432	89654692		10286	0	28675	38961
S/G/Y/R/B/O	NT_029973	AC010599	89556552	3			AC093276	89654692		16939	0	456	17395
S/G/Y/R/B/O	NT_029973	AC008903	89654692	3	chr5	NT_029973	AC093530	89698929	3	6306	0	0	6306
S/G/Y/R/B/O	NT_029973	AC008903	89654692	3			AC010961	89556552		15505	0	0	15505
S/G/Y/R/B/O	NT_029973	AC008903	89654692	3			AC016016	89556552		31422	3841	16560	51823
S/G/Y/R/B/O	NT_029973	AC008903	89654692	3			AC026804	89556552		76976	2078	14649	93703
S/G/Y/R/B/O	NT_029973	AC008903	89654692	3			AC073432	89556552		12396	0	28672	41068
S/G/Y/R/B/O	NT_029973	AC008903	89654692	3			AC093276	89556552		36671	0	0	36671
S/G/Y/R/B/O	NT_029973	AC093530	89698929	3	chr5	NT_029973	AC099554	89813944	2	24881	0	0	24881
S/G/Y/R/B/O	NT_029973	AC093530	89698929	3			AC016016	89654692		34073	9606	8028	51707
S/G/Y/R/B/O	NT_029973	AC093530	89698929	3			AC026804	89654692		21393	726	0	22119
S/G/Y/R/B/O	NT_029973	AC093530	89698929	3			AC055812	89654692		23222	1601	0	24823
S/G/Y/R/B/O	NT_029973	AC093530	89698929	3			AC093276	89654692		44130	0	0	44130
S/G/Y/R/B/O	NT_029973	AC099554	89813944	2	chr5	NT_029973	AC093510	89947024	3	6904	0	0	6904
S/G/Y/R/B/O	NT_029973	AC099554	89813944	2			AC011828	89813944		73621	13688	16286	103595
S/G/Y/R/B/O	NT_029973	AC099554	89813944	2			AC025923	89813944		111398	4380	0	115778
S/G/Y/R/B/O	NT_029973	AC099554	89813944	2			AC055812	89813944		163206	1601	0	164807
S/G/Y/R/B/O	NT_029973	AC099554	89813944	2			AC099497	89698929		135718	0	0	135718
S/G/Y/R/B/O	NT_029973	AC093510	89947024	3	chr5	NT_029973	AC027323	90072957	3	7075	0	0	7075
S/G/Y/R/B/O	NT_029973	AC093510	89947024	3			AC025923	89698929		36789	0	0	36789
S/G/Y/R/B/O	NT_029973	AC093510	89947024	3			AC091943	90072957		23548	0	994	24542
S/G/Y/R/B/O	NT_029973	AC093510	89947024	3			AC093266	90072957		55789	0	0	55789
S/G/Y/R/B/O	NT_029973	AC093510	89947024	3			AC099497	90072957		36902	0	0	36902
S/G/Y/R/B/O	NT_029973	AC093510	89947024	3			AC104122	89813944		68098	0	0	68098
S/G/Y/R/B/O	NT_029973	AC027323	90072957	3	chr5	NT_029973	AC093529	90205893	3	15141	0	0	15141
S/G/Y/R/B/O	NT_029973	AC027323	90072957	3			AC010622	89813944		35591	4994	25875	66460
S/G/Y/R/B/O	NT_029973	AC027323	90072957	3			AC020999	89813944		53361	1751	12254	67366
S/G/Y/R/B/O	NT_029973	AC027323	90072957	3			AC093266	89813944		56077	0	20312	76389
S/G/Y/R/B/O	NT_029973	AC027323	90072957	3			AC104122	90205893		80911	0	0	80911
S/G/Y/R/B/O	NT_029973	AC093529	90205893	3	chr5	NT_029973	AC094109	90300046	3	65509	0	0	65509
S/G/Y/R/B/O	NT_029973	AC093529	90205893	3			AC020999	90205893		85117	2258	1841	89216
S/G/Y/R/B/O	NT_029973	AC093529	90205893	3			AC068323	90072957		65509	0	0	65509
S/G/Y/R/B/O	NT_029973	AC094109	90300046	3	chr5	NT_029973	AC099512	90394576	3	35880	0	0	35880
S/G/Y/R/B/O	NT_029973	AC094109	90300046	3			AC012545	90300046		66124	0	0	66124
S/G/Y/R/B/O	NT_029973	AC094109	90300046	3			AC018622	90300046		76709	0	0	76709
S/G/Y/R/B/O	NT_029973	AC094109	90300046	3			AC020999	90300046		46197	2258	1841	50296
S/G/Y/R/B/O	NT_029973	AC094109	90300046	3			AC068323	90300046		160039	0	0	160039
S/G/Y/R/B/O	NT_029973	AC099512	90394576	3	chr5	NT_029973	AC034215	90520434	3	16046	0	0	16046
S/G/Y/R/B/O	NT_029973	AC099512	90394576	3			AC012545	90394576		120739	0	0	120739
S/G/Y/R/B/O	NT_029973	AC099512	90394576	3			AC018622	90394576		146671	0	0	146671
S/G/Y/R/B/O	NT_029973	AC099512	90394576	3			AC068323	90520434		35880	0	0	35880
S/G/Y/R/B/O	NT_029973	AC034215	90520434	3	chr5	NT_029973	AC074132	90646464	3	34546	0	0	34546
S/G/Y/R/B/O	NT_029973	AC074132	90646464	3	chr5	NT_029973	AC093281	90730009	3	44446	0	0	44446
S/G/Y/R/B/O	NT_029973	AC093281	90730009	3	chr5	NT_029973	AC123595	90852966	3	38399	0	0	38399
S/G/Y/R/B/O	NT_029973	AC093281	90730009	3			AC044889	90730009		74153	0	5409	79562
S/G/Y/R/B/O	NT_029973	AC123595	90852966	3	chr5	NT_029973	AC008799	90919919	3	0	0	0	0
S/G/Y/R/B/O	NT_029973	AC123595	90852966	3			AC044889	90852966		66501	13053	21494	101048
S/G/Y/R/B/O	NT_029973	AC008799	90919919	3	chr5	NT_029973	AC008923	91043017	3	50482	0	0	50482
S/G/Y/R/B/O	NT_029973	AC008799	90919919	3			AC044889	91043017		23259	1863	6328	31450
S/G/Y/R/B/O	NT_029973	AC008923	91043017	3	chr5	NT_029973	AC091879	91143566	3	0	0	0	0
S/G/Y/R/B/O	NT_029973	AC091879	91143566	3	chr5	NT_029973	AC093298	91248490	3	0	0	0	0
S/G/Y/R/B/O	NT_029973	AC091879	91143566	3			AC013777	90919919		131616	0	7975	139591
S/G/Y/R/B/O	NT_029973	AC091879	91143566	3			AC027466	90919919		39928	2144	502	42574
S/G/Y/R/B/O	NT_029973	AC093298	91248490	3	chr5	NT_029973	AC010256	91437777	3	52478	0	0	52478
S/G/Y/R/B/O	NT_029973	AC093298	91248490	3			AC025776	91437777		23728	4826	11884	40438
S/G/Y/R/B/O	NT_029973	AC093298	91248490	3			AC027466	91437777		72901	2862	14404	90167
S/G/Y/R/B/O	NT_029973	AC010256	91437777	3	chr5	NT_029973	AC008824	91526620	3	2454	0	0	2454
S/G/Y/R/B/O	NT_029973	AC008824	91526620	3	chr5	NT_029973	AC094100	91645342	3	44727	0	0	44727
S/G/Y/R/B/O	NT_029973	AC094100	91645342	3	chr5	NT_029973	AC116332	91732725	3	0	0	0	0
S/G/Y/R/B/O	NT_029973	AC116332	91732725	3	chr5	NT_029973	AC114316	91792405	3	59430	0	0	59430
S/G/Y/R/B/O	NT_029973	AC116332	91732725	3			AC013378	91526620		10016	9576	8966	28558
S/G/Y/R/B/O	NT_029973	AC116332	91732725	3			AC134519	91792405		69061	0	0	69061
S/G/Y/R/B/O	NT_029973	AC114316	91792405	3
S/G/Y/R/B/O	NT_029973	AC114316	91792405	3			AC013378	91792405		40081	16708	17392	74181
S/G/Y/R/B/O	NT_029973	AC114316	91792405	3			AC134519	91732725		164331	0	0	164331