|
|
Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
| |
|
|
|
|
Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_007072 | AC006525 | 130518320 | 3 | chr5 | NT_007072 | AC011424 | 130608924 | 3 | 0 | 498 | 0 | 498 |
S/G/Y/R/B/O |
NT_007072 | AC006525 | 130518320 | 3 |   |   | AC122712 | 130608924 | | 34581 | 0 | 1153 | 35734 |
S/G/Y/R/B/O |
NT_007072 | AC011424 | 130608924 | 3 | chr5 | NT_007072 | AC003951 | 130693417 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_007072 | AC003951 | 130693417 | 3 | chr5 | NT_007072 | AC113367 | 130734289 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_007072 | AC113367 | 130734289 | 3 | chr5 | NT_007072 | AC008711 | 130831919 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_007072 | AC008711 | 130831919 | 3 | chr5 | NT_007072 | AC004650 | 130921555 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_007072 | AC004650 | 130921555 | 3 | chr5 | NT_007072 | AC005179 | 130977584 | 3 | 0 | 934 | 0 | 934 |
S/G/Y/R/B/O |
NT_007072 | AC004650 | 130921555 | 3 |   |   | AC008633 | 130977584 | | 44106 | 0 | 2334 | 46440 |
S/G/Y/R/B/O |
NT_007072 | AC005179 | 130977584 | 3 | chr5 | NT_007072 | AC004777 | 131036415 | 3 | 0 | 435 | 0 | 435 |
S/G/Y/R/B/O |
NT_007072 | AC004777 | 131036415 | 3 | chr5 | NT_007072 | AC114275 | 131077200 | 3 | 29147 | 0 | 0 | 29147 |
S/G/Y/R/B/O |
NT_007072 | AC114275 | 131077200 | 3 | chr5 | NT_007072 | AC009016 | 131099927 | 3 | 15648 | 0 | 0 | 15648 |
S/G/Y/R/B/O |
NT_007072 | AC009016 | 131099927 | 3 | chr5 | NT_007072 | AC008497 | 131163305 | 3 | 63327 | 0 | 0 | 63327 |
S/G/Y/R/B/O |
NT_007072 | AC009016 | 131099927 | 3 |   |   | AC004749 | 131099927 | | 54350 | 0 | 0 | 54350 |
S/G/Y/R/B/O |
NT_007072 | AC009016 | 131099927 | 3 |   |   | AC009010 | 131163305 | | 20085 | 2329 | 2675 | 25089 |
S/G/Y/R/B/O |
NT_007072 | AC009016 | 131099927 | 3 |   |   | AC009191 | 131163305 | | 24132 | 0 | 0 | 24132 |
S/G/Y/R/B/O |
NT_007072 | AC009016 | 131099927 | 3 |   |   | AC034252 | 131163305 | | 60789 | 0 | 0 | 60789 |
S/G/Y/R/B/O |
NT_007072 | AC008497 | 131163305 | 3 | chr5 | NT_007072 | AC004622 | 131231996 | 3 | 62286 | 0 | 0 | 62286 |
S/G/Y/R/B/O |
NT_007072 | AC008497 | 131163305 | 3 |   |   | AC004749 | 131231996 | | 60745 | 0 | 0 | 60745 |
S/G/Y/R/B/O |
NT_007072 | AC008497 | 131163305 | 3 |   |   | AC009010 | 131231996 | | 31290 | 2327 | 11559 | 45176 |
S/G/Y/R/B/O |
NT_007072 | AC008497 | 131163305 | 3 |   |   | AC034252 | 131099927 | | 79770 | 0 | 0 | 79770 |
S/G/Y/R/B/O |
NT_007072 | AC004622 | 131231996 | 3 | chr5 | NT_007072 | AC004227 | 131254875 | 3 | 0 | 1390 | 0 | 1390 |
S/G/Y/R/B/O |
NT_007072 | AC004622 | 131231996 | 3 |   |   | AC034252 | 131163305 | | 12640 | 0 | 0 | 12640 |
S/G/Y/R/B/O |
NT_007072 | AC004227 | 131254875 | 3 | chr5 | NT_007072 | AC026754 | 131326425 | 3 | 14452 | 0 | 0 | 14452 |
S/G/Y/R/B/O |
NT_007072 | AC026754 | 131326425 | 3 | chr5 | NT_007072 | AC008695 | 131383410 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_007072 | AC026754 | 131326425 | 3 |   |   | AC005576 | 131254875 | | 42984 | 0 | 0 | 42984 |
S/G/Y/R/B/O |
NT_007072 | AC008695 | 131383410 | 3 | chr5 | NT_007072 | AC005593 | 131511976 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_007072 | AC005593 | 131511976 | 3 | chr5 | NT_007072 | AC026398 | 131585824 | 3 | 6556 | 0 | 0 | 6556 |
S/G/Y/R/B/O |
NT_007072 | AC026398 | 131585824 | 3 | chr5 | NT_007072 | AC025772 | 131668050 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_007072 | AC025772 | 131668050 | 3 | chr5 | NT_007072 | AC034228 | 131693478 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_007072 | AC034228 | 131693478 | 3 | chr5 | NT_007072 | AC034216 | 131861551 | 3 | 115191 | 0 | 0 | 115191 |
S/G/Y/R/B/O |
NT_007072 | AC034228 | 131693478 | 3 |   |   | AC004511 | 131511976 | | 22217 | 0 | 0 | 22217 |
S/G/Y/R/B/O |
NT_007072 | AC034228 | 131693478 | 3 |   |   | AC005217 | 131511976 | | 85524 | 0 | 0 | 85524 |
S/G/Y/R/B/O |
NT_007072 | AC034228 | 131693478 | 3 |   |   | AC009175 | 131511976 | | 19675 | 0 | 56621 | 76296 |
S/G/Y/R/B/O |
NT_007072 | AC034228 | 131693478 | 3 |   |   | AC023171 | 131511976 | | 11090 | 0 | 0 | 11090 |
S/G/Y/R/B/O |
NT_007072 | AC034216 | 131861551 | 3 | chr5 | NT_007072 | AC063976 | 131924761 | 3 | 0 | 0 | 27048 | 27048 |
S/G/Y/R/B/O |
NT_007072 | AC034216 | 131861551 | 3 |   |   | AC004511 | 131861551 | | 44955 | 0 | 0 | 44955 |
S/G/Y/R/B/O |
NT_007072 | AC034216 | 131861551 | 3 |   |   | AC005217 | 131861551 | | 42864 | 0 | 0 | 42864 |
S/G/Y/R/B/O |
NT_007072 | AC034216 | 131861551 | 3 |   |   | AC009175 | 131861551 | | 84140 | 0 | 27677 | 111817 |
S/G/Y/R/B/O |
NT_007072 | AC063976 | 131924761 | 3 | chr5 | NT_007072 | AC034220 | 131987183 | 3 | 27807 | 0 | 0 | 27807 |
S/G/Y/R/B/O |
NT_007072 | AC063976 | 131924761 | 3 |   |   | AC009175 | 131924761 | | 13266 | 0 | 25015 | 38281 |
S/G/Y/R/B/O |
NT_007072 | AC063976 | 131924761 | 3 |   |   | AC011430 | 131924761 | | 25262 | 2825 | 4863 | 32950 |
S/G/Y/R/B/O |
NT_007072 | AC063976 | 131924761 | 3 |   |   | AC046165 | 131987183 | | 38724 | 0 | 0 | 38724 |
S/G/Y/R/B/O |
NT_007072 | AC034220 | 131987183 | 3 | chr5 | NT_007072 | AC008599 | 132106167 | 3 | 44683 | 0 | 0 | 44683 |
S/G/Y/R/B/O |
NT_007072 | AC034220 | 131987183 | 3 |   |   | AC009175 | 132106167 | | 17575 | 0 | 19278 | 36853 |
S/G/Y/R/B/O |
NT_007072 | AC034220 | 131987183 | 3 |   |   | AC011429 | 132106167 | | 11105 | 1517 | 1372 | 13994 |
S/G/Y/R/B/O |
NT_007072 | AC034220 | 131987183 | 3 |   |   | AC011430 | 132106167 | | 66349 | 5766 | 1563 | 73678 |
S/G/Y/R/B/O |
NT_007072 | AC034220 | 131987183 | 3 |   |   | AC023861 | 132106167 | | 69007 | 3529 | 0 | 72536 |
S/G/Y/R/B/O |
NT_007072 | AC034220 | 131987183 | 3 |   |   | AC046165 | 132106167 | | 42106 | 0 | 29507 | 71613 |
S/G/Y/R/B/O |
NT_007072 | AC008599 | 132106167 | 3 | chr5 | NT_007072 | AC118464 | 132150635 | 3 | 9749 | 0 | 0 | 9749 |
S/G/Y/R/B/O |
NT_007072 | AC008599 | 132106167 | 3 |   |   | AC011429 | 131924761 | | 15167 | 7326 | 11208 | 33701 |
S/G/Y/R/B/O |
NT_007072 | AC008599 | 132106167 | 3 |   |   | AC023861 | 131924761 | | 39241 | 0 | 13570 | 52811 |
S/G/Y/R/B/O |
NT_007072 | AC118464 | 132150635 | 3 | chr5 | NT_007072 | AC116366 | 132179666 | 3 | 8307 | 0 | 0 | 8307 |
S/G/Y/R/B/O |
NT_007072 | AC118464 | 132150635 | 3 |   |   | AC004628 | 132150635 | | 24347 | 0 | 0 | 24347 |
S/G/Y/R/B/O |
NT_007072 | AC118464 | 132150635 | 3 |   |   | AC023861 | 132106167 | | 39671 | 0 | 0 | 39671 |
S/G/Y/R/B/O |
NT_007072 | AC116366 | 132179666 | 3 | chr5 | NT_007072 | AC004042 | 132340744 | 3 | 33076 | 0 | 0 | 33076 |
S/G/Y/R/B/O |
NT_007072 | AC116366 | 132179666 | 3 |   |   | AC009015 | 132340744 | | 39344 | 4520 | 10684 | 54548 |
S/G/Y/R/B/O |
NT_007072 | AC004042 | 132340744 | 3 | chr5 | NT_007072 | AC004041 | 132364795 | 3 | 0 | 942 | 0 | 942 |
S/G/Y/R/B/O |
NT_007072 | AC004042 | 132340744 | 3 |   |   | AC079320 | 132364795 | | 57073 | 0 | 0 | 57073 |
S/G/Y/R/B/O |
NT_007072 | AC004041 | 132364795 | 3 | chr5 | NT_007072 | AC004039 | 132439755 | 3 | 0 | 0 | 393 | 393 |
S/G/Y/R/B/O |
NT_007072 | AC004041 | 132364795 | 3 |   |   | AC079320 | 132340744 | | 32489 | 0 | 0 | 32489 |
S/G/Y/R/B/O |
NT_007072 | AC004039 | 132439755 | 3 | chr5 | NT_007072 | AC004237 | 132489644 | 3 | 0 | 0 | 264 | 264 |
S/G/Y/R/B/O |
NT_007072 | AC004237 | 132489644 | 3 | chr5 | NT_007072 | AC004775 | 132528095 | 3 | 0 | 0 | 438 | 438 |
S/G/Y/R/B/O |
NT_007072 | AC004775 | 132528095 | 3 | chr5 | NT_007072 | AC004500 | 132609494 | 3 | 0 | 0 | 160 | 160 |
S/G/Y/R/B/O |
NT_007072 | AC004775 | 132528095 | 3 |   |   | AC026794 | 132609494 | | 69273 | 0 | 0 | 69273 |
S/G/Y/R/B/O |
NT_007072 | AC004775 | 132528095 | 3 |   |   | AC074127 | 132609494 | | 17214 | 0 | 0 | 17214 |
S/G/Y/R/B/O |
NT_007072 | AC004500 | 132609494 | 3 | chr5 | NT_007072 | AC010240 | 132686872 | 3 | 8429 | 0 | 0 | 8429 |
S/G/Y/R/B/O |
NT_007072 | AC004500 | 132609494 | 3 |   |   | AC026794 | 132686872 | | 57613 | 0 | 0 | 57613 |
S/G/Y/R/B/O |
NT_007072 | AC010240 | 132686872 | 3 | chr5 | NT_007072 | AC113410 | 132791083 | 3 | 16709 | 0 | 0 | 16709 |
S/G/Y/R/B/O |
NT_007072 | AC113410 | 132791083 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_007072 | AC113410 | 132791083 | 3 |   |   | AC134307 | 132908220 | | 26308 | 0 | 1150 | 27458 |
| |
|
|
|