Chromosome 5 - Clone Overlaps

Chromosome 5 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034766	NT_037650	NT_037651	NT_023089	NT_006576	NT_023084	NT_037652	NT_037653
NT_006547	NT_023124	NT_023085	NT_034819	NT_006679	NT_023195	NT_034769	NT_023098
NT_037654	NT_023102	NT_037655	NT_037656	NT_037657	NT_033088	NT_023081	NT_006431
NT_037658	NT_037659	NT_006713	NT_030680	NT_037660	NT_029973	NT_023148	NT_006654
NT_037661	NT_034772	NT_006899	NT_030685	NT_025702	NT_016755	NT_007072	NT_034775
NT_034776	NT_037662	NT_037663	NT_037664	NT_016714	NT_029289	NT_006859	NT_034779
NT_006788	NT_030698	NT_023133	NT_037665	NT_023132	NT_037666	NT_034860	NT_037667
NT_006519	NT_037668

NT_030698

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_030698	AC136424	158865663	3	chr5	NT_030698	AC008640	158894539	3	64823	0	0	64823
S/G/Y/R/B/O	NT_030698	AC008640	158894539	3	chr5	NT_030698	AC134043	159014679	3	33431	0	0	33431
S/G/Y/R/B/O	NT_030698	AC008640	158894539	3			AC134299	159014679		42763	0	0	42763
S/G/Y/R/B/O	NT_030698	AC008640	158894539	3			AC134299	159014679		42763	0	0	42763
S/G/Y/R/B/O	NT_030698	AC008640	158894539	3			AC134518	159014679		66926	0	0	66926
S/G/Y/R/B/O	NT_030698	AC008640	158894539	3			AC134518	159014679		66926	0	0	66926
S/G/Y/R/B/O	NT_030698	AC134043	159014679	3	chr5	NT_030698	AC011376	159168777	3	103778	0	0	103778
S/G/Y/R/B/O	NT_030698	AC134043	159014679	3			AC134299	159168777		51328	0	1155	52483
S/G/Y/R/B/O	NT_030698	AC134043	159014679	3			AC134518	159168777		66977	0	1159	68136
S/G/Y/R/B/O	NT_030698	AC011376	159168777	3	chr5	NT_030698	AC011418	159197608	3	0	0	0	0
S/G/Y/R/B/O	NT_030698	AC011376	159168777	3			AC007200	159168777		26163	0	0	26163
S/G/Y/R/B/O	NT_030698	AC011376	159168777	3			AC134299	159014679		30848	0	1139	31987
S/G/Y/R/B/O	NT_030698	AC011376	159168777	3			AC134518	159014679		23713	0	1139	24852
S/G/Y/R/B/O	NT_030698	AC011418	159197608	3	chr5	NT_030698	AC008697	159279957	3	19269	0	0	19269
S/G/Y/R/B/O	NT_030698	AC008697	159279957	3	chr5	NT_030698	AC008703	159381681	3	36307	0	0	36307
S/G/Y/R/B/O	NT_030698	AC008703	159381681	3	chr5	NT_030698	AC008691	159559561	3	0	0	0	0
S/G/Y/R/B/O	NT_030698	AC008703	159381681	3			AC114926	159279957		54200	0	0	54200
S/G/Y/R/B/O	NT_030698	AC008691	159559561	3	chr5	NT_030698	AC011348	159711321	3	0	0	0	0
S/G/Y/R/B/O	NT_030698	AC008691	159559561	3			AC120119	159279957		25835	0	0	25835
S/G/Y/R/B/O	NT_030698	AC011348	159711321	3	chr5	NT_030698	AC011343	159777092	3	5133	0	0	5133
S/G/Y/R/B/O	NT_030698	AC011348	159711321	3			AC011412	159777092		18186	0	0	18186
S/G/Y/R/B/O	NT_030698	AC011343	159777092	3	chr5	NT_030698	AC127458	159855620	3	6931	0	0	6931
S/G/Y/R/B/O	NT_030698	AC011343	159777092	3			AC011412	159711321		75367	0	0	75367
S/G/Y/R/B/O	NT_030698	AC127458	159855620	3	chr5	NT_030698	AC068657	159857416	3	0	1802	0	1802
S/G/Y/R/B/O	NT_030698	AC068657	159857416	3	chr5	NT_030698	AC008706	159983946	3	30551	0	0	30551
S/G/Y/R/B/O	NT_030698	AC008706	159983946	3	chr5	NT_030698	AC008609	160117785	3	35061	0	0	35061
S/G/Y/R/B/O	NT_030698	AC008609	160117785	3	chr5	NT_030698	AC112191	160160481	3	0	0	0	0
S/G/Y/R/B/O	NT_030698	AC112191	160160481	3	chr5	NT_030698	AC091842	160306206	3	0	0	0	0
S/G/Y/R/B/O	NT_030698	AC112191	160160481	3			AC008720	159983946		93978	0	0	93978
S/G/Y/R/B/O	NT_030698	AC091842	160306206	3	chr5	NT_030698	AC008388	160422087	3	36217	0	0	36217
S/G/Y/R/B/O	NT_030698	AC091842	160306206	3			AC008678	160422087		120589	0	0	120589
S/G/Y/R/B/O	NT_030698	AC008388	160422087	3	chr5	NT_030698	AC008456	160507760	3	3776	0	0	3776
S/G/Y/R/B/O	NT_030698	AC008456	160507760	3	chr5	NT_030698	AC011363	160635290	3	61599	0	0	61599
S/G/Y/R/B/O	NT_030698	AC008456	160507760	3			AC099481	160635290		70770	0	0	70770
S/G/Y/R/B/O	NT_030698	AC011363	160635290	3	chr5	NT_030698	AC091928	160676114	3	10138	0	0	10138
S/G/Y/R/B/O	NT_030698	AC011363	160635290	3			AC099481	160676114		102322	0	0	102322
S/G/Y/R/B/O	NT_030698	AC091928	160676114	3	chr5	NT_030698	AC091884	160866894	3	40351	0	0	40351
S/G/Y/R/B/O	NT_030698	AC091928	160676114	3			AC067762	160635290		23935	6871	0	30806
S/G/Y/R/B/O	NT_030698	AC091928	160676114	3			AC099481	160866894		18560	0	0	18560
S/G/Y/R/B/O	NT_030698	AC091884	160866894	3	chr5	NT_030698	AC026772	161018692	3	12344	0	0	12344
S/G/Y/R/B/O	NT_030698	AC091884	160866894	3			AC067762	161018692		33717	15480	18599	67796
S/G/Y/R/B/O	NT_030698	AC026772	161018692	3	chr5	NT_030698	AC022120	161138430	1	3679	2481	0	6160
S/G/Y/R/B/O	NT_030698	AC026772	161018692	3			AC008405	160676114		23236	0	6864	30100
S/G/Y/R/B/O	NT_030698	AC026772	161018692	3			AC024410	161138430		64641	10472	19414	94527
S/G/Y/R/B/O	NT_030698	AC026772	161018692	3			AC046141	161138430		10059	0	29683	39742
S/G/Y/R/B/O	NT_030698	AC022120	161138430	1	chr5	NT_030698	AC008712	161211258	3	59727	1891	1136	62754
S/G/Y/R/B/O	NT_030698	AC022120	161138430	1			AC008405	160866894		87372	5932	37212	130516
S/G/Y/R/B/O	NT_030698	AC022120	161138430	1			AC008658	160866894		85643	16938	11641	114222
S/G/Y/R/B/O	NT_030698	AC022120	161138430	1			AC024410	161211258		18436	7246	6428	32110
S/G/Y/R/B/O	NT_030698	AC022120	161138430	1			AC046141	161018692		59313	7041	11620	77974
S/G/Y/R/B/O	NT_030698	AC008712	161211258	3	chr5	NT_030698	AC091882	161359210	3	0	0	0	0
S/G/Y/R/B/O	NT_030698	AC008712	161211258	3			AC008405	161359210		48198	0	0	48198
S/G/Y/R/B/O	NT_030698	AC008712	161211258	3			AC008658	161359210		45491	0	26573	72064
S/G/Y/R/B/O	NT_030698	AC008712	161211258	3			AC046141	161138430		23837	0	0	23837
S/G/Y/R/B/O	NT_030698	AC091882	161359210	3	chr5	NT_030698	AC091989	161397561	3	5704	0	0	5704
S/G/Y/R/B/O	NT_030698	AC091989	161397561	3	chr5	NT_030698	AC091944	161560430	3	24124	0	0	24124
S/G/Y/R/B/O	NT_030698	AC091989	161397561	3			AC016303	161397561		45054	0	24906	69960
S/G/Y/R/B/O	NT_030698	AC091989	161397561	3			AC021364	161397561		55238	2358	0	57596
S/G/Y/R/B/O	NT_030698	AC091944	161560430	3	chr5	NT_030698	AC108130	161718115	3	12815	0	0	12815
S/G/Y/R/B/O	NT_030698	AC091944	161560430	3			AC016303	161560430		42160	0	9437	51597
S/G/Y/R/B/O	NT_030698	AC091944	161560430	3			AC021364	161560430		78275	1693	3537	83505
S/G/Y/R/B/O	NT_030698	AC108130	161718115	3	chr5	NT_030698	AC021079	161821581	3	0	0	0	0
S/G/Y/R/B/O	NT_030698	AC021079	161821581	3	chr5	NT_030698	AC008611	161930902	3	14901	0	0	14901
S/G/Y/R/B/O	NT_030698	AC008611	161930902	3	chr5	NT_030698	AF165124	162029056	3	0	0	0	0
S/G/Y/R/B/O	NT_030698	AC008611	161930902	3			AC008684	161930902		17620	0	15155	32775
S/G/Y/R/B/O	NT_030698	AC008611	161930902	3			AC091926	161821581		16817	0	0	16817
S/G/Y/R/B/O	NT_030698	AF165124	162029056	3	chr5	NT_030698	AC091984	162158334	3	0	0	0	0
S/G/Y/R/B/O	NT_030698	AF165124	162029056	3			AC008684	161821581		85589	11029	23257	119875
S/G/Y/R/B/O	NT_030698	AC091984	162158334	3	chr5	NT_030698	AC091908	162277370	3	6737	0	0	6737
S/G/Y/R/B/O	NT_030698	AC091984	162158334	3			AC008684	161821581		35725	8094	3214	47033
S/G/Y/R/B/O	NT_030698	AC091984	162158334	3			AC091926	162277370		151586	0	0	151586
S/G/Y/R/B/O	NT_030698	AC091908	162277370	3	chr5	NT_030698	AC091996	162308535	3	14789	0	0	14789
S/G/Y/R/B/O	NT_030698	AC091996	162308535	3	chr5	NT_030698	AC091901	162476517	3	0	0	0	0
S/G/Y/R/B/O	NT_030698	AC091901	162476517	3	chr5	NT_030698	AC010602	162636282	3	30926	0	0	30926
S/G/Y/R/B/O	NT_030698	AC091901	162476517	3			AC008478	162277370		96422	0	0	96422
S/G/Y/R/B/O	NT_030698	AC091901	162476517	3			AC023335	162636282		56295	0	14661	70956
S/G/Y/R/B/O	NT_030698	AC091901	162476517	3			AC069370	162636282		52564	11229	18361	82154
S/G/Y/R/B/O	NT_030698	AC010602	162636282	3	chr5	NT_030698	AC091921	162750724	3	0	0	5864	5864
S/G/Y/R/B/O	NT_030698	AC010602	162636282	3			AC008478	162636282		20666	3062	0	23728
S/G/Y/R/B/O	NT_030698	AC010602	162636282	3			AC015479	162636282		31366	1776	5519	38661
S/G/Y/R/B/O	NT_030698	AC010602	162636282	3			AC069370	162636282		30626	17623	9091	57340
S/G/Y/R/B/O	NT_030698	AC091921	162750724	3
S/G/Y/R/B/O	NT_030698	AC091921	162750724	3	chr5	NT_023133	AC113414	162926942	3	75273	0	0	75273
S/G/Y/R/B/O	NT_030698	AC091921	162750724	3			AC015479	162636282		104289	0	665	104954
S/G/Y/R/B/O	NT_030698	AC091921	162750724	3			AC021160	162636282		37742	2028	5046	44816