Chromosome 5 - Clone Overlaps

Chromosome 5 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034766	NT_037650	NT_037651	NT_023089	NT_006576	NT_023084	NT_037652	NT_037653
NT_006547	NT_023124	NT_023085	NT_034819	NT_006679	NT_023195	NT_034769	NT_023098
NT_037654	NT_023102	NT_037655	NT_037656	NT_037657	NT_033088	NT_023081	NT_006431
NT_037658	NT_037659	NT_006713	NT_030680	NT_037660	NT_029973	NT_023148	NT_006654
NT_037661	NT_034772	NT_006899	NT_030685	NT_025702	NT_016755	NT_007072	NT_034775
NT_034776	NT_037662	NT_037663	NT_037664	NT_016714	NT_029289	NT_006859	NT_034779
NT_006788	NT_030698	NT_023133	NT_037665	NT_023132	NT_037666	NT_034860	NT_037667
NT_006519	NT_037668

NT_006899

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_006899	AC113356	112396455	3	chr5	NT_006899	AC109473	112426820	3	15384	0	0	15384
S/G/Y/R/B/O	NT_006899	AC113356	112396455	3			AC013770	112003070		15309	427	0	15736
S/G/Y/R/B/O	NT_006899	AC113356	112396455	3			AC136500	112426820		30335	0	0	30335
S/G/Y/R/B/O	NT_006899	AC109473	112426820	3	chr5	NT_006899	AC008575	112581778	3	88190	0	0	88190
S/G/Y/R/B/O	NT_006899	AC109473	112426820	3			AC008461	112426820		22693	2607	0	25300
S/G/Y/R/B/O	NT_006899	AC109473	112426820	3			AC013770	112581778		146272	8604	736	155612
S/G/Y/R/B/O	NT_006899	AC109473	112426820	3			AC079463	112581778		90842	0	0	90842
S/G/Y/R/B/O	NT_006899	AC109473	112426820	3			AC136500	112396455		160534	0	0	160534
S/G/Y/R/B/O	NT_006899	AC008575	112581778	3	chr5	NT_006899	AC008536	112661851	3	0	0	18888	18888
S/G/Y/R/B/O	NT_006899	AC008575	112581778	3			AC008461	112396455		84159	5338	6737	96234
S/G/Y/R/B/O	NT_006899	AC008575	112581778	3			AC013770	112661851		64001	8604	842	73447
S/G/Y/R/B/O	NT_006899	AC008575	112581778	3			AC079463	112661851		103746	0	0	103746
S/G/Y/R/B/O	NT_006899	AC008575	112581778	3			AC136500	112426820		78361	0	0	78361
S/G/Y/R/B/O	NT_006899	AC008536	112661851	3	chr5	NT_006899	AC106750	112820695	3	3713	0	0	3713
S/G/Y/R/B/O	NT_006899	AC008536	112661851	3			AC008451	112426820		34797	1883	24012	60692
S/G/Y/R/B/O	NT_006899	AC008536	112661851	3			AC008461	112426820		37684	7236	2284	47204
S/G/Y/R/B/O	NT_006899	AC008536	112661851	3			AC009038	112581778		33736	0	0	33736
S/G/Y/R/B/O	NT_006899	AC008536	112661851	3			AC010481	112581778		79619	0	12792	92411
S/G/Y/R/B/O	NT_006899	AC106750	112820695	3	chr5	NT_006899	AC126917	112918188	3	0	0	0	0
S/G/Y/R/B/O	NT_006899	AC126917	112918188	3	chr5	NT_006899	AC079465	113114896	2	121658	0	0	121658
S/G/Y/R/B/O	NT_006899	AC126917	112918188	3			AC025185	112661851		121712	0	0	121712
S/G/Y/R/B/O	NT_006899	AC126917	112918188	3			AC067893	112661851		49168	4118	29800	83086
S/G/Y/R/B/O	NT_006899	AC079465	113114896	2	chr5	NT_006899	AC010431	113168849	3	9103	0	0	9103
S/G/Y/R/B/O	NT_006899	AC079465	113114896	2			AC025185	113168849		184634	0	0	184634
S/G/Y/R/B/O	NT_006899	AC079465	113114896	2			AC067893	113168849		105811	8496	29788	144095
S/G/Y/R/B/O	NT_006899	AC010431	113168849	3	chr5	NT_006899	AC093208	113295599	3	68344	0	0	68344
S/G/Y/R/B/O	NT_006899	AC010431	113168849	3			AC008602	112918188		88958	0	0	88958
S/G/Y/R/B/O	NT_006899	AC010431	113168849	3			AC067893	112918188		15179	2360	0	17539
S/G/Y/R/B/O	NT_006899	AC093208	113295599	3	chr5	NT_006899	AC010389	113339255	3	2185	0	0	2185
S/G/Y/R/B/O	NT_006899	AC093208	113295599	3			AC008602	113295599		85622	0	0	85622
S/G/Y/R/B/O	NT_006899	AC010389	113339255	3	chr5	NT_006899	AC093240	113471130	3	0	0	0	0
S/G/Y/R/B/O	NT_006899	AC093240	113471130	3	chr5	NT_006899	AC093528	113556249	3	30961	0	0	30961
S/G/Y/R/B/O	NT_006899	AC093240	113471130	3			AC022937	113295599		24927	2250	10407	37584
S/G/Y/R/B/O	NT_006899	AC093528	113556249	3	chr5	NT_006899	AC022955	113672413	1	17217	0	3266	20483
S/G/Y/R/B/O	NT_006899	AC093528	113556249	3			AC022937	113556249		41888	4840	23939	70667
S/G/Y/R/B/O	NT_006899	AC022955	113672413	1	chr5	NT_006899	AC094099	113672551	3	34942	7383	6412	48737
S/G/Y/R/B/O	NT_006899	AC022955	113672413	1			AC022937	113471130		17737	8966	4924	31627
S/G/Y/R/B/O	NT_006899	AC022955	113672413	1			AC023952	113471130		30730	3665	4978	39373
S/G/Y/R/B/O	NT_006899	AC094099	113672551	3	chr5	NT_006899	AC106789	113740991	3	4048	0	0	4048
S/G/Y/R/B/O	NT_006899	AC106789	113740991	3	chr5	NT_006899	AC094088	113804884	3	47124	0	0	47124
S/G/Y/R/B/O	NT_006899	AC106789	113740991	3			AC023952	113672413		94208	0	1177	95385
S/G/Y/R/B/O	NT_006899	AC106789	113740991	3			AC084135	113672413		49292	7120	1927	58339
S/G/Y/R/B/O	NT_006899	AC094088	113804884	3	chr5	NT_006899	AC113364	113884975	3	0	0	0	0
S/G/Y/R/B/O	NT_006899	AC094088	113804884	3			AC023952	113672551		41966	0	0	41966
S/G/Y/R/B/O	NT_006899	AC094088	113804884	3			AC084135	113672551		50633	3916	11296	65845
S/G/Y/R/B/O	NT_006899	AC113364	113884975	3	chr5	NT_006899	AC093527	113984492	3	29864	0	0	29864
S/G/Y/R/B/O	NT_006899	AC113364	113884975	3			AC084135	113740991		49414	2197	10031	61642
S/G/Y/R/B/O	NT_006899	AC093527	113984492	3	chr5	NT_006899	AC025761	114118295	3	0	0	93293	93293
S/G/Y/R/B/O	NT_006899	AC093527	113984492	3			AC021085	113984492		45967	0	261	46228
S/G/Y/R/B/O	NT_006899	AC093527	113984492	3			AC021415	113984492		33416	0	13733	47149
S/G/Y/R/B/O	NT_006899	AC025761	114118295	3	chr5	NT_006899	AC109482	114164871	3	0	0	14646	14646
S/G/Y/R/B/O	NT_006899	AC025761	114118295	3			AC021415	113884975		60710	0	4263	64973
S/G/Y/R/B/O	NT_006899	AC109482	114164871	3	chr5	NT_006899	AC010230	114251756	3	10400	0	0	10400
S/G/Y/R/B/O	NT_006899	AC109482	114164871	3			AC009589	114164871		18303	1897	0	20200
S/G/Y/R/B/O	NT_006899	AC109482	114164871	3			AC021415	114251756		10181	0	0	10181
S/G/Y/R/B/O	NT_006899	AC010230	114251756	3	chr5	NT_006899	AC068660	114360359	3	0	0	0	0
S/G/Y/R/B/O	NT_006899	AC010230	114251756	3			AC009589	114118295		22138	0	0	22138
S/G/Y/R/B/O	NT_006899	AC010230	114251756	3			AC106761	114118295		24884	0	10012	34896
S/G/Y/R/B/O	NT_006899	AC068660	114360359	3	chr5	NT_006899	AC008492	114510135	3	70277	0	0	70277
S/G/Y/R/B/O	NT_006899	AC068660	114360359	3			AC008486	114164871		123230	0	0	123230
S/G/Y/R/B/O	NT_006899	AC068660	114360359	3			AC008621	114510135		43753	0	0	43753
S/G/Y/R/B/O	NT_006899	AC068660	114360359	3			AC022321	114510135		37233	0	32334	69567
S/G/Y/R/B/O	NT_006899	AC008492	114510135	3	chr5	NT_006899	AC099484	114577984	3	0	0	0	0
S/G/Y/R/B/O	NT_006899	AC008492	114510135	3			AC008486	114510135		71171	0	0	71171
S/G/Y/R/B/O	NT_006899	AC008492	114510135	3			AC008621	114510135		67013	0	0	67013
S/G/Y/R/B/O	NT_006899	AC008492	114510135	3			AC022321	114510135		26943	1503	22002	50448
S/G/Y/R/B/O	NT_006899	AC099484	114577984	3	chr5	NT_006899	AC094104	114680117	3	0	0	0	0
S/G/Y/R/B/O	NT_006899	AC099484	114577984	3			AC019030	114360359		13610	0	11609	25219
S/G/Y/R/B/O	NT_006899	AC094104	114680117	3	chr5	NT_006899	AC008494	114876594	3	7289	0	0	7289
S/G/Y/R/B/O	NT_006899	AC094104	114680117	3			AC016663	114876594		11475	0	0	11475
S/G/Y/R/B/O	NT_006899	AC094104	114680117	3			AC019030	114876594		34392	2418	0	36810
S/G/Y/R/B/O	NT_006899	AC008494	114876594	3	chr5	NT_006899	AC091981	115051089	3	72786	0	0	72786
S/G/Y/R/B/O	NT_006899	AC008494	114876594	3			AC008585	114876594		86152	0	0	86152
S/G/Y/R/B/O	NT_006899	AC008494	114876594	3			AC016663	114876594		34006	0	47566	81572
S/G/Y/R/B/O	NT_006899	AC008494	114876594	3			AC020577	114876594		64129	0	0	64129
S/G/Y/R/B/O	NT_006899	AC008494	114876594	3			AC091949	114876594		11626	3996	20316	35938
S/G/Y/R/B/O	NT_006899	AC008494	114876594	3			AC094095	115051089		108848	0	0	108848
S/G/Y/R/B/O	NT_006899	AC091981	115051089	3
S/G/Y/R/B/O	NT_006899	AC091981	115051089	3			AC008585	114876594		40352	0	0	40352
S/G/Y/R/B/O	NT_006899	AC091981	115051089	3			AC008585	114876594		40352	0	0	40352
S/G/Y/R/B/O	NT_006899	AC091981	115051089	3			AC020577	114876594		151978	0	26406	178384
S/G/Y/R/B/O	NT_006899	AC091981	115051089	3			AC020577	114876594		151978	0	26406	178384
S/G/Y/R/B/O	NT_006899	AC091981	115051089	3			AC091949	114876594		100118	7590	22874	130582
S/G/Y/R/B/O	NT_006899	AC091981	115051089	3			AC091949	114876594		100118	7590	22874	130582