Chromosome 5 - Clone Overlaps

Chromosome 5 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034766	NT_037650	NT_037651	NT_023089	NT_006576	NT_023084	NT_037652	NT_037653
NT_006547	NT_023124	NT_023085	NT_034819	NT_006679	NT_023195	NT_034769	NT_023098
NT_037654	NT_023102	NT_037655	NT_037656	NT_037657	NT_033088	NT_023081	NT_006431
NT_037658	NT_037659	NT_006713	NT_030680	NT_037660	NT_029973	NT_023148	NT_006654
NT_037661	NT_034772	NT_006899	NT_030685	NT_025702	NT_016755	NT_007072	NT_034775
NT_034776	NT_037662	NT_037663	NT_037664	NT_016714	NT_029289	NT_006859	NT_034779
NT_006788	NT_030698	NT_023133	NT_037665	NT_023132	NT_037666	NT_034860	NT_037667
NT_006519	NT_037668

NT_034769

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_034769	AC008964	40072005	3	chr5	NT_034769	AC010633	40215846	3	108932	0	0	108932
S/G/Y/R/B/O	NT_034769	AC008964	40072005	3	chr5	NT_023195	AC109467	40007568	3	15823	0	0	15823
S/G/Y/R/B/O	NT_034769	AC008964	40072005	3			AC016719	40215846		16847	0	0	16847
S/G/Y/R/B/O	NT_034769	AC010633	40215846	3	chr5	NT_034769	AC025471	40302797	3	20284	0	0	20284
S/G/Y/R/B/O	NT_034769	AC010633	40215846	3			AC007914	40007568		17057	2951	0	20008
S/G/Y/R/B/O	NT_034769	AC010633	40215846	3			AC015575	40072005		25762	0	0	25762
S/G/Y/R/B/O	NT_034769	AC025471	40302797	3	chr5	NT_034769	AC008846	40431089	3	20504	0	0	20504
S/G/Y/R/B/O	NT_034769	AC025471	40302797	3			AC007914	40302797		101834	2949	43097	147880
S/G/Y/R/B/O	NT_034769	AC025471	40302797	3			AC008968	40431089		92526	0	0	92526
S/G/Y/R/B/O	NT_034769	AC025471	40302797	3			AC022135	40215846		66649	5197	3277	75123
S/G/Y/R/B/O	NT_034769	AC008846	40431089	3	chr5	NT_034769	AC008916	40503254	3	28821	0	0	28821
S/G/Y/R/B/O	NT_034769	AC008846	40431089	3			AC007914	40215846		68405	0	0	68405
S/G/Y/R/B/O	NT_034769	AC008846	40431089	3			AC069179	40302797		61305	0	0	61305
S/G/Y/R/B/O	NT_034769	AC008916	40503254	3	chr5	NT_034769	AC026708	40608295	3	0	1482	0	1482
S/G/Y/R/B/O	NT_034769	AC008916	40503254	3			AC008959	40431089		75442	0	0	75442
S/G/Y/R/B/O	NT_034769	AC008916	40503254	3			AC069179	40608295		90802	1660	1082	93544
S/G/Y/R/B/O	NT_034769	AC026708	40608295	3	chr5	NT_034769	AC091886	40748860	3	11741	0	0	11741
S/G/Y/R/B/O	NT_034769	AC026708	40608295	3			AC008959	40503254		24493	0	0	24493
S/G/Y/R/B/O	NT_034769	AC026708	40608295	3			AC027475	40503254		61426	3540	7703	72669
S/G/Y/R/B/O	NT_034769	AC091886	40748860	3	chr5	NT_034769	AC093217	40754040	3	0	0	0	0
S/G/Y/R/B/O	NT_034769	AC091886	40748860	3			AC027475	40608295		34353	0	0	34353
S/G/Y/R/B/O	NT_034769	AC093217	40754040	3	chr5	NT_034769	AC008820	40927541	3	0	0	3560	3560
S/G/Y/R/B/O	NT_034769	AC093217	40754040	3			AC025247	40927541		29045	2666	0	31711
S/G/Y/R/B/O	NT_034769	AC093217	40754040	3			AC026209	40927541		45873	20800	21761	88434
S/G/Y/R/B/O	NT_034769	AC093217	40754040	3			AC027475	40927541		57106	3349	0	60455
S/G/Y/R/B/O	NT_034769	AC093217	40754040	3			AC114320	40927541		34340	0	0	34340
S/G/Y/R/B/O	NT_034769	AC008820	40927541	3	chr5	NT_034769	AC026714	40983259	3	2124	0	0	2124
S/G/Y/R/B/O	NT_034769	AC008820	40927541	3			AC025247	40927541		33043	4939	15678	53660
S/G/Y/R/B/O	NT_034769	AC026714	40983259	3	chr5	NT_034769	AC116363	41070288	3	36356	0	0	36356
S/G/Y/R/B/O	NT_034769	AC026714	40983259	3			AC025247	40927541		32023	1645	8520	42188
S/G/Y/R/B/O	NT_034769	AC026714	40983259	3			AC027504	40927541		14614	0	2968	17582
S/G/Y/R/B/O	NT_034769	AC116363	41070288	3	chr5	NT_034769	AC008842	41225621	3	2814	0	0	2814
S/G/Y/R/B/O	NT_034769	AC116363	41070288	3			AC010165	41225621		58877	0	0	58877
S/G/Y/R/B/O	NT_034769	AC116363	41070288	3			AC027504	40983259		74998	5208	2997	83203
S/G/Y/R/B/O	NT_034769	AC008842	41225621	3	chr5	NT_034769	AC110001	41350859	3	0	0	0	0
S/G/Y/R/B/O	NT_034769	AC008842	41225621	3			AC022241	40983259		39166	2048	3368	44582
S/G/Y/R/B/O	NT_034769	AC008842	41225621	3			AC109494	40983259		54583	0	0	54583
S/G/Y/R/B/O	NT_034769	AC110001	41350859	3	chr5	NT_034769	AC108105	41385553	3	28600	0	0	28600
S/G/Y/R/B/O	NT_034769	AC110001	41350859	3			AC016369	41070288		30124	0	7928	38052
S/G/Y/R/B/O	NT_034769	AC110001	41350859	3			AC022241	41070288		29292	0	0	29292
S/G/Y/R/B/O	NT_034769	AC110001	41350859	3			AC113394	41385553		30012	0	0	30012
S/G/Y/R/B/O	NT_034769	AC108105	41385553	3	chr5	NT_034769	AC093277	41519925	3	25173	0	0	25173
S/G/Y/R/B/O	NT_034769	AC108105	41385553	3			AC016369	41385553		121302	0	41591	162893
S/G/Y/R/B/O	NT_034769	AC108105	41385553	3			AC022241	41385553		42544	0	0	42544
S/G/Y/R/B/O	NT_034769	AC108105	41385553	3			AC113394	41350859		115918	0	0	115918
S/G/Y/R/B/O	NT_034769	AC093277	41519925	3	chr5	NT_034769	AC114977	41553646	3	0	0	0	0
S/G/Y/R/B/O	NT_034769	AC093277	41519925	3			AC016369	41350859		31628	0	0	31628
S/G/Y/R/B/O	NT_034769	AC114977	41553646	3	chr5	NT_034769	AC093264	41707067	3	28108	0	0	28108
S/G/Y/R/B/O	NT_034769	AC114977	41553646	3			AC027488	41385553		71531	0	0	71531
S/G/Y/R/B/O	NT_034769	AC093264	41707067	3	chr5	NT_034769	AC008810	41843176	3	0	0	0	0
S/G/Y/R/B/O	NT_034769	AC093264	41707067	3			AC027488	41707067		53204	0	0	53204
S/G/Y/R/B/O	NT_034769	AC008810	41843176	3	chr5	NT_034769	AC026732	41936052	3	0	693	0	693
S/G/Y/R/B/O	NT_034769	AC008810	41843176	3			AC025758	41553646		51603	0	37362	88965
S/G/Y/R/B/O	NT_034769	AC026732	41936052	3	chr5	NT_034769	AC114967	42039398	3	40360	0	0	40360
S/G/Y/R/B/O	NT_034769	AC026732	41936052	3			AC008922	41843176		43586	0	0	43586
S/G/Y/R/B/O	NT_034769	AC026732	41936052	3			AC018595	41843176		23923	0	88	24011
S/G/Y/R/B/O	NT_034769	AC026732	41936052	3			AC067784	41843176		40319	0	0	40319
S/G/Y/R/B/O	NT_034769	AC114967	42039398	3	chr5	NT_034769	AC008863	42118086	3	0	0	0	0
S/G/Y/R/B/O	NT_034769	AC114967	42039398	3			AC018595	42039398		100104	0	5863	105967
S/G/Y/R/B/O	NT_034769	AC114967	42039398	3			AC067784	41936052		157224	7174	7070	171468
S/G/Y/R/B/O	NT_034769	AC008863	42118086	3	chr5	NT_034769	AC091871	42270615	3	3242	0	0	3242
S/G/Y/R/B/O	NT_034769	AC091871	42270615	3	chr5	NT_034769	AC008830	42354407	3	9387	0	0	9387
S/G/Y/R/B/O	NT_034769	AC008830	42354407	3	chr5	NT_034769	AC094082	42485699	3	0	0	0	0
S/G/Y/R/B/O	NT_034769	AC008830	42354407	3			AC016332	42118086		92673	2226	0	94899
S/G/Y/R/B/O	NT_034769	AC008830	42354407	3			AC021600	42118086		22183	0	5932	28115
S/G/Y/R/B/O	NT_034769	AC008830	42354407	3			AC022141	42118086		68525	4258	2139	74922
S/G/Y/R/B/O	NT_034769	AC094082	42485699	3	chr5	NT_034769	AC020940	42524608	1	19438	1945	2012	23395
S/G/Y/R/B/O	NT_034769	AC094082	42485699	3			AC016332	42270615		22792	0	0	22792
S/G/Y/R/B/O	NT_034769	AC094082	42485699	3			AC021600	42524608		68376	2130	5915	76421
S/G/Y/R/B/O	NT_034769	AC094082	42485699	3			AC022141	42524608		35530	4311	1015	40856
S/G/Y/R/B/O	NT_034769	AC020940	42524608	1	chr5	NT_034769	AC109453	42600999	3	9541	0	4622	14163
S/G/Y/R/B/O	NT_034769	AC020940	42524608	1			AC021600	42524608		59383	3978	5911	69272
S/G/Y/R/B/O	NT_034769	AC020940	42524608	1			AC025649	42524608		32662	4862	24811	62335
S/G/Y/R/B/O	NT_034769	AC109453	42600999	3	chr5	NT_034769	AC008817	42663985	3	0	0	0	0
S/G/Y/R/B/O	NT_034769	AC109453	42600999	3			AC025649	42524608		10481	0	13629	24110
S/G/Y/R/B/O	NT_034769	AC008817	42663985	3	chr5	NT_034769	AC114946	42846769	3	0	0	0	0
S/G/Y/R/B/O	NT_034769	AC008817	42663985	3			AC025384	42524608		34565	0	19386	53951
S/G/Y/R/B/O	NT_034769	AC008817	42663985	3			AC025649	42524608		42740	0	0	42740
S/G/Y/R/B/O	NT_034769	AC114946	42846769	3	chr5	NT_034769	AC034222	42905808	3	4346	0	0	4346
S/G/Y/R/B/O	NT_034769	AC114946	42846769	3			AC025384	42524608		58459	0	1069	59528
S/G/Y/R/B/O	NT_034769	AC034222	42905808	3	chr5	NT_034769	AC010408	43042389	3	40155	0	0	40155
S/G/Y/R/B/O	NT_034769	AC034222	42905808	3			AC022972	43042389		21395	1976	1069	24440
S/G/Y/R/B/O	NT_034769	AC010408	43042389	3	chr5	NT_034769	AC008912	43074040	3	0	0	0	0
S/G/Y/R/B/O	NT_034769	AC010408	43042389	3			AC022972	42846769		25032	0	30997	56029
S/G/Y/R/B/O	NT_034769	AC008912	43074040	3	chr5	NT_034769	AC108099	43186570	3	35588	0	0	35588
S/G/Y/R/B/O	NT_034769	AC008912	43074040	3			AC022972	42905808		78554	1854	5918	86326
S/G/Y/R/B/O	NT_034769	AC008912	43074040	3			AC026655	42905808		23657	2146	6491	32294
S/G/Y/R/B/O	NT_034769	AC108099	43186570	3	chr5	NT_034769	AC104114	43323820	3	0	0	0	0
S/G/Y/R/B/O	NT_034769	AC108099	43186570	3			AC022972	43074040		15612	0	0	15612
S/G/Y/R/B/O	NT_034769	AC108099	43186570	3			AC026655	43074040		22016	0	8634	30650
S/G/Y/R/B/O	NT_034769	AC104114	43323820	3