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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_034776 | AC023061 | 133609066 | 3 | chr5 | NT_034776 | AC117534 | 133642965 | 3 | 54189 | 0 | 0 | 54189 |
S/G/Y/R/B/O |
NT_034776 | AC023061 | 133609066 | 3 |   |   | AC008605 | 133642965 | | 44831 | 2139 | 2936 | 49906 |
S/G/Y/R/B/O |
NT_034776 | AC023061 | 133609066 | 3 |   |   | AC011432 | 133642965 | | 24892 | 0 | 0 | 24892 |
S/G/Y/R/B/O |
NT_034776 | AC023061 | 133609066 | 3 |   |   | AC018373 | 133642965 | | 11065 | 0 | 0 | 11065 |
S/G/Y/R/B/O |
NT_034776 | AC023061 | 133609066 | 3 |   |   | AC034253 | 133642965 | | 28348 | 0 | 3345 | 31693 |
S/G/Y/R/B/O |
NT_034776 | AC117534 | 133642965 | 3 | chr5 | NT_034776 | AC025177 | 133716210 | 3 | 21712 | 0 | 0 | 21712 |
S/G/Y/R/B/O |
NT_034776 | AC117534 | 133642965 | 3 |   |   | AC008605 | 133515180 | | 59562 | 7067 | 15695 | 82324 |
S/G/Y/R/B/O |
NT_034776 | AC117534 | 133642965 | 3 |   |   | AC034253 | 133716210 | | 28317 | 0 | 15930 | 44247 |
S/G/Y/R/B/O |
NT_034776 | AC025177 | 133716210 | 3 | chr5 | NT_034776 | AC008608 | 133829177 | 3 | 7114 | 0 | 0 | 7114 |
S/G/Y/R/B/O |
NT_034776 | AC025177 | 133716210 | 3 |   |   | AC008605 | 133716210 | | 58127 | 11882 | 24649 | 94658 |
S/G/Y/R/B/O |
NT_034776 | AC025177 | 133716210 | 3 |   |   | AC011432 | 133829177 | | 13886 | 0 | 16471 | 30357 |
S/G/Y/R/B/O |
NT_034776 | AC008608 | 133829177 | 3 | chr5 | NT_034776 | AC011336 | 133982734 | 3 | 3127 | 0 | 0 | 3127 |
S/G/Y/R/B/O |
NT_034776 | AC008608 | 133829177 | 3 |   |   | AC005200 | 133642965 | | 79243 | 0 | 0 | 79243 |
S/G/Y/R/B/O |
NT_034776 | AC008608 | 133829177 | 3 |   |   | AC008605 | 133642965 | | 36983 | 6834 | 4368 | 48185 |
S/G/Y/R/B/O |
NT_034776 | AC008608 | 133829177 | 3 |   |   | AC009012 | 133642965 | | 60713 | 0 | 933 | 61646 |
S/G/Y/R/B/O |
NT_034776 | AC008608 | 133829177 | 3 |   |   | AC009017 | 133642965 | | 34260 | 4519 | 14667 | 53446 |
S/G/Y/R/B/O |
NT_034776 | AC011336 | 133982734 | 3 | chr5 | NT_034776 | AC104109 | 134011205 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_034776 | AC011336 | 133982734 | 3 |   |   | AC007199 | 133716210 | | 12819 | 0 | 0 | 12819 |
S/G/Y/R/B/O |
NT_034776 | AC011336 | 133982734 | 3 |   |   | AC009012 | 133829177 | | 21870 | 2973 | 0 | 24843 |
S/G/Y/R/B/O |
NT_034776 | AC011336 | 133982734 | 3 |   |   | AC009017 | 133829177 | | 22243 | 1538 | 0 | 23781 |
S/G/Y/R/B/O |
NT_034776 | AC104109 | 134011205 | 3 | chr5 | NT_034776 | AC109454 | 134173112 | 3 | 0 | 0 | 18402 | 18402 |
S/G/Y/R/B/O |
NT_034776 | AC104109 | 134011205 | 3 |   |   | AC020780 | 133829177 | | 22525 | 2172 | 1852 | 26549 |
S/G/Y/R/B/O |
NT_034776 | AC109454 | 134173112 | 3 | chr5 | NT_034776 | AC004631 | 134296678 | 3 | 4603 | 0 | 0 | 4603 |
S/G/Y/R/B/O |
NT_034776 | AC109454 | 134173112 | 3 |   |   | AC011426 | 134296678 | | 50756 | 2799 | 3447 | 57002 |
S/G/Y/R/B/O |
NT_034776 | AC109454 | 134173112 | 3 |   |   | AC020780 | 134296678 | | 79372 | 8097 | 6559 | 94028 |
S/G/Y/R/B/O |
NT_034776 | AC004631 | 134296678 | 3 | chr5 | NT_034776 | AC005355 | 134312486 | 3 | 2306 | 0 | 0 | 2306 |
S/G/Y/R/B/O |
NT_034776 | AC005355 | 134312486 | 3 | chr5 | NT_034776 | AC106763 | 134388244 | 3 | 21765 | 0 | 0 | 21765 |
S/G/Y/R/B/O |
NT_034776 | AC005355 | 134312486 | 3 |   |   | AC016284 | 134296678 | | 19356 | 1582 | 0 | 20938 |
S/G/Y/R/B/O |
NT_034776 | AC106763 | 134388244 | 3 | chr5 | NT_034776 | AC010301 | 134532329 | 3 | 4079 | 0 | 0 | 4079 |
S/G/Y/R/B/O |
NT_034776 | AC106763 | 134388244 | 3 |   |   | AC011433 | 134532329 | | 75363 | 0 | 0 | 75363 |
S/G/Y/R/B/O |
NT_034776 | AC106763 | 134388244 | 3 |   |   | AC016284 | 134532329 | | 43707 | 18605 | 55566 | 117878 |
S/G/Y/R/B/O |
NT_034776 | AC106763 | 134388244 | 3 |   |   | AC133125 | 134532329 | | 18157 | 2183 | 40150 | 60490 |
S/G/Y/R/B/O |
NT_034776 | AC010301 | 134532329 | 3 | chr5 | NT_034776 | AC006077 | 134683316 | 3 | 0 | 0 | 535 | 535 |
S/G/Y/R/B/O |
NT_034776 | AC010301 | 134532329 | 3 |   |   | AC005372 | 134532329 | | 43458 | 0 | 0 | 43458 |
S/G/Y/R/B/O |
NT_034776 | AC010301 | 134532329 | 3 |   |   | AC009008 | 134683316 | | 22881 | 0 | 731 | 23612 |
S/G/Y/R/B/O |
NT_034776 | AC006077 | 134683316 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_034776 | AC006077 | 134683316 | 3 |   |   | AC009008 | 134388244 | | 22761 | 0 | 8418 | 31179 |
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