Chromosome 5 - Clone Overlaps

Chromosome 5 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034766	NT_037650	NT_037651	NT_023089	NT_006576	NT_023084	NT_037652	NT_037653
NT_006547	NT_023124	NT_023085	NT_034819	NT_006679	NT_023195	NT_034769	NT_023098
NT_037654	NT_023102	NT_037655	NT_037656	NT_037657	NT_033088	NT_023081	NT_006431
NT_037658	NT_037659	NT_006713	NT_030680	NT_037660	NT_029973	NT_023148	NT_006654
NT_037661	NT_034772	NT_006899	NT_030685	NT_025702	NT_016755	NT_007072	NT_034775
NT_034776	NT_037662	NT_037663	NT_037664	NT_016714	NT_029289	NT_006859	NT_034779
NT_006788	NT_030698	NT_023133	NT_037665	NT_023132	NT_037666	NT_034860	NT_037667
NT_006519	NT_037668

NT_034779

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_034779	AC011372	150196477	1	chr5	NT_034779	AC011388	150362793	3	15607	0	0	15607
S/G/Y/R/B/O	NT_034779	AC011372	150196477	1			AL080244	150362793		34683	0	1647	36330
S/G/Y/R/B/O	NT_034779	AC011388	150362793	3	chr5	NT_034779	AC008472	150435994	3	16127	0	0	16127
S/G/Y/R/B/O	NT_034779	AC011388	150362793	3			AL080244	150196477		19430	0	51033	70463
S/G/Y/R/B/O	NT_034779	AC008472	150435994	3	chr5	NT_034779	AC011383	150527600	3	22720	0	0	22720
S/G/Y/R/B/O	NT_034779	AC008472	150435994	3			AL080244	150362793		82680	0	3766	86446
S/G/Y/R/B/O	NT_034779	AC011383	150527600	3	chr5	NT_034779	AC008453	150598268	3	45761	0	0	45761
S/G/Y/R/B/O	NT_034779	AC008453	150598268	3	chr5	NT_034779	AC008450	150697556	3	0	0	36239	36239
S/G/Y/R/B/O	NT_034779	AC008453	150598268	3			AC010309	150697556		22906	0	26008	48914
S/G/Y/R/B/O	NT_034779	AC008453	150598268	3			AC022091	150527600		38899	4338	20666	63903
S/G/Y/R/B/O	NT_034779	AC008450	150697556	3	chr5	NT_034779	AC010441	150753832	3	22741	0	0	22741
S/G/Y/R/B/O	NT_034779	AC008450	150697556	3			AC010309	150598268		45250	0	2696	47946
S/G/Y/R/B/O	NT_034779	AC008450	150697556	3			AC011408	150753832		10821	0	0	10821
S/G/Y/R/B/O	NT_034779	AC010441	150753832	3	chr5	NT_034779	AC022106	150888167	3	48173	0	0	48173
S/G/Y/R/B/O	NT_034779	AC010441	150753832	3			AC008643	150697556		84541	0	0	84541
S/G/Y/R/B/O	NT_034779	AC010441	150753832	3			AC010309	150697556		77100	3052	9266	89418
S/G/Y/R/B/O	NT_034779	AC010441	150753832	3			AC011408	150697556		31301	0	0	31301
S/G/Y/R/B/O	NT_034779	AC022106	150888167	3	chr5	NT_034779	AC008641	150989775	3	7037	0	0	7037
S/G/Y/R/B/O	NT_034779	AC022106	150888167	3			AC010309	150989775		30068	0	0	30068
S/G/Y/R/B/O	NT_034779	AC022106	150888167	3			AC106805	150753832		30380	0	0	30380
S/G/Y/R/B/O	NT_034779	AC008641	150989775	3	chr5	NT_034779	AC011342	151159353	3	24539	0	0	24539
S/G/Y/R/B/O	NT_034779	AC008641	150989775	3			AC008666	150753832		98901	0	0	98901
S/G/Y/R/B/O	NT_034779	AC008641	150989775	3			AC008707	150753832		83659	0	0	83659
S/G/Y/R/B/O	NT_034779	AC008641	150989775	3			AC106805	150888167		41068	0	99033	140101
S/G/Y/R/B/O	NT_034779	AC011342	151159353	3	chr5	NT_034779	AC008385	151255361	3	70883	0	0	70883
S/G/Y/R/B/O	NT_034779	AC011342	151159353	3			AC011391	150989775		50496	0	32391	82887
S/G/Y/R/B/O	NT_034779	AC008385	151255361	3	chr5	NT_034779	AC034205	151336083	3	12089	0	0	12089
S/G/Y/R/B/O	NT_034779	AC008385	151255361	3			AC008552	150989775		74043	0	3658	77701
S/G/Y/R/B/O	NT_034779	AC008385	151255361	3			AC011391	151159353		49496	0	22665	72161
S/G/Y/R/B/O	NT_034779	AC034205	151336083	3	chr5	NT_034779	AC011337	151483536	3	38600	0	0	38600
S/G/Y/R/B/O	NT_034779	AC034205	151336083	3			AC008552	151255361		22035	0	0	22035
S/G/Y/R/B/O	NT_034779	AC034205	151336083	3			AC025433	151483536		76110	1808	7993	85911
S/G/Y/R/B/O	NT_034779	AC011337	151483536	3	chr5	NT_034779	AC011374	151539448	3	11453	0	0	11453
S/G/Y/R/B/O	NT_034779	AC011337	151483536	3			AC025433	151539448		26012	0	12002	38014
S/G/Y/R/B/O	NT_034779	AC011374	151539448	3	chr5	NT_034779	AC091982	151731948	3	21481	0	0	21481
S/G/Y/R/B/O	NT_034779	AC011374	151539448	3			AC011417	151483536		13983	0	0	13983
S/G/Y/R/B/O	NT_034779	AC011374	151539448	3			AC109999	151731948		73117	0	0	73117
S/G/Y/R/B/O	NT_034779	AC091982	151731948	3	chr5	NT_034779	AC010312	151880802	3	32835	0	0	32835
S/G/Y/R/B/O	NT_034779	AC091982	151731948	3			AC011417	151539448		60085	5505	9797	75387
S/G/Y/R/B/O	NT_034779	AC091982	151731948	3			AC109999	151539448		92003	0	0	92003
S/G/Y/R/B/O	NT_034779	AC010312	151880802	3	chr5	NT_034779	AC008664	151915876	3	15975	0	0	15975
S/G/Y/R/B/O	NT_034779	AC008664	151915876	3	chr5	NT_034779	AC010314	152032076	3	0	0	0	0
S/G/Y/R/B/O	NT_034779	AC008664	151915876	3			AC015702	151880802		33442	5664	11640	50746
S/G/Y/R/B/O	NT_034779	AC008664	151915876	3			AC016545	151880802		15176	0	0	15176
S/G/Y/R/B/O	NT_034779	AC010314	152032076	3	chr5	NT_034779	AC010610	152124622	3	9431	0	0	9431
S/G/Y/R/B/O	NT_034779	AC010314	152032076	3			AC015702	152124622		35696	6722	4559	46977
S/G/Y/R/B/O	NT_034779	AC010314	152032076	3			AC016545	152124622		50645	0	0	50645
S/G/Y/R/B/O	NT_034779	AC010610	152124622	3	chr5	NT_034779	AC008704	152138962	3	0	0	0	0
S/G/Y/R/B/O	NT_034779	AC010610	152124622	3			AC018759	152032076		23770	0	0	23770
S/G/Y/R/B/O	NT_034779	AC008704	152138962	3	chr5	NT_034779	AC079464	152227565	3	3753	0	0	3753
S/G/Y/R/B/O	NT_034779	AC008704	152138962	3			AC008678	152032076		35180	0	1166	36346
S/G/Y/R/B/O	NT_034779	AC079464	152227565	3	chr5	NT_034779	AC008571	152279499	3	2382	0	0	2382
S/G/Y/R/B/O	NT_034779	AC079464	152227565	3			AC008678	152279499		48022	0	0	48022
S/G/Y/R/B/O	NT_034779	AC008571	152279499	3	chr5	NT_034779	AC091829	152491372	3	16279	0	0	16279
S/G/Y/R/B/O	NT_034779	AC091829	152491372	3	chr5	NT_034779	AC091969	152567768	3	0	0	0	0
S/G/Y/R/B/O	NT_034779	AC091969	152567768	3	chr5	NT_034779	AC094098	152688896	3	0	0	0	0
S/G/Y/R/B/O	NT_034779	AC094098	152688896	3	chr5	NT_034779	AC126772	152769493	3	0	0	0	0
S/G/Y/R/B/O	NT_034779	AC094098	152688896	3			AC126770	152279499		107536	0	0	107536
S/G/Y/R/B/O	NT_034779	AC126772	152769493	3	chr5	NT_034779	AC091952	152842102	3	28516	0	0	28516
S/G/Y/R/B/O	NT_034779	AC091952	152842102	3	chr5	NT_034779	AC122705	152963830	3	27704	0	0	27704
S/G/Y/R/B/O	NT_034779	AC091952	152842102	3			AC012686	152842102		14617	0	0	14617
S/G/Y/R/B/O	NT_034779	AC122705	152963830	3	chr5	NT_034779	AC091900	153004161	3	0	0	0	0
S/G/Y/R/B/O	NT_034779	AC091900	153004161	3	chr5	NT_034779	AC093505	153149499	3	0	0	0	0
S/G/Y/R/B/O	NT_034779	AC091900	153004161	3			AC012686	152842102		51022	1936	36391	89349
S/G/Y/R/B/O	NT_034779	AC093505	153149499	3	chr5	NT_034779	AC091991	153260401	3	0	0	0	0
S/G/Y/R/B/O	NT_034779	AC093505	153149499	3			AC021800	152842102		21824	0	1459	23283
S/G/Y/R/B/O	NT_034779	AC091991	153260401	3	chr5	NT_034779	AC022099	153405783	3	105982	0	0	105982
S/G/Y/R/B/O	NT_034779	AC091991	153260401	3			AC021239	152842102		27239	0	0	27239
S/G/Y/R/B/O	NT_034779	AC091991	153260401	3			AC021800	152842102		73549	0	0	73549
S/G/Y/R/B/O	NT_034779	AC022099	153405783	3	chr5	NT_034779	AC010613	153422417	3	3011	0	0	3011
S/G/Y/R/B/O	NT_034779	AC022099	153405783	3			AC010244	153405783		96960	0	0	96960
S/G/Y/R/B/O	NT_034779	AC022099	153405783	3			AC021239	153422417		27188	0	0	27188
S/G/Y/R/B/O	NT_034779	AC022099	153405783	3			AC021800	153422417		26034	0	0	26034
S/G/Y/R/B/O	NT_034779	AC010613	153422417	3	chr5	NT_034779	AC025156	153507144	3	72739	0	0	72739
S/G/Y/R/B/O	NT_034779	AC025156	153507144	3	chr5	NT_034779	AC091960	153602171	3	33798	0	0	33798
S/G/Y/R/B/O	NT_034779	AC025156	153507144	3			AC008698	153507144		38040	0	0	38040
S/G/Y/R/B/O	NT_034779	AC091960	153602171	3	chr5	NT_034779	AC091962	153741051	1	3993	0	6583	10576
S/G/Y/R/B/O	NT_034779	AC091960	153602171	3			AC008698	153602171		72130	0	0	72130
S/G/Y/R/B/O	NT_034779	AC091962	153741051	1	chr5	NT_034779	AC010232	153860952	3	0	0	1420	1420
S/G/Y/R/B/O	NT_034779	AC091962	153741051	1			AC021680	153860952		44053	5006	30808	79867
S/G/Y/R/B/O	NT_034779	AC010232	153860952	3	chr5	NT_034779	AC022088	154026872	3	10613	0	0	10613
S/G/Y/R/B/O	NT_034779	AC010232	153860952	3			AC012589	153602171		50359	2537	7739	60635
S/G/Y/R/B/O	NT_034779	AC022088	154026872	3	chr5	NT_034779	AC010295	154125161	3	57669	0	0	57669
S/G/Y/R/B/O	NT_034779	AC022088	154026872	3			AC012589	154125161		51965	2156	2601	56722
S/G/Y/R/B/O	NT_034779	AC022088	154026872	3			AC113369	154125161		57851	0	0	57851
S/G/Y/R/B/O	NT_034779	AC010295	154125161	3	chr5	NT_034779	AC008672	154173318	3	6589	0	0	6589
S/G/Y/R/B/O	NT_034779	AC008672	154173318	3	chr5	NT_034779	AC008675	154202444	3	0	0	542	542
S/G/Y/R/B/O	NT_034779	AC008675	154202444	3	chr5	NT_034779	AC008625	154387864	3	90647	0	0	90647
S/G/Y/R/B/O	NT_034779	AC008675	154202444	3			AC008636	154387864		90712	0	0	90712
S/G/Y/R/B/O	NT_034779	AC008675	154202444	3			AC010367	154173318		63404	0	0	63404
S/G/Y/R/B/O	NT_034779	AC008675	154202444	3			AC018757	154173318		186412	0	0	186412
S/G/Y/R/B/O	NT_034779	AC008675	154202444	3			AC106758	154173318		34030	0	13102	47132
S/G/Y/R/B/O	NT_034779	AC008625	154387864	3	chr5	NT_034779	AC026688	154434739	3	6474	0	0	6474
S/G/Y/R/B/O	NT_034779	AC008625	154387864	3			AC008636	154173318		137592	0	0	137592
S/G/Y/R/B/O	NT_034779	AC008625	154387864	3			AC010367	154202444		35237	0	0	35237
S/G/Y/R/B/O	NT_034779	AC008625	154387864	3			AC018757	154202444		90650	0	0	90650
S/G/Y/R/B/O	NT_034779	AC008625	154387864	3			AC106758	154434739		80829	0	13102	93931
S/G/Y/R/B/O	NT_034779	AC026688	154434739	3	chr5	NT_034779	AC112175	154507768	3	55189	0	0	55189
S/G/Y/R/B/O	NT_034779	AC026688	154434739	3			AC022412	154387864		52584	8834	29542	90960
S/G/Y/R/B/O	NT_034779	AC026688	154434739	3			AC106758	154387864		54391	0	28537	82928
S/G/Y/R/B/O	NT_034779	AC112175	154507768	3	chr5	NT_034779	AC008379	154650480	3	0	0	0	0
S/G/Y/R/B/O	NT_034779	AC112175	154507768	3			AC022412	154507768		33979	9107	33624	76710
S/G/Y/R/B/O	NT_034779	AC008379	154650480	3	chr5	NT_034779	AC112169	154712061	3	0	0	0	0
S/G/Y/R/B/O	NT_034779	AC008379	154650480	3			AC069489	154434739		20368	0	0	20368
S/G/Y/R/B/O	NT_034779	AC112169	154712061	3	chr5	NT_034779	AC008421	154879206	3	17317	0	0	17317
S/G/Y/R/B/O	NT_034779	AC112169	154712061	3			AC069489	154879206		117764	6261	13782	137807
S/G/Y/R/B/O	NT_034779	AC112169	154712061	3			AP002016	154879206		31005	0	37420	68425
S/G/Y/R/B/O	NT_034779	AC008421	154879206	3	chr5	NT_034779	AC008410	154959756	2	43820	0	0	43820
S/G/Y/R/B/O	NT_034779	AC008421	154879206	3			AC025747	154959756		52750	2191	9783	64724
S/G/Y/R/B/O	NT_034779	AC008421	154879206	3			AP002016	154712061		17297	0	0	17297
S/G/Y/R/B/O	NT_034779	AC008410	154959756	2	chr5	NT_034779	AC010476	155017844	3	29990	0	0	29990
S/G/Y/R/B/O	NT_034779	AC008410	154959756	2			AC025747	155017844		50337	4744	9823	64904
S/G/Y/R/B/O	NT_034779	AC008410	154959756	2			AC026694	155017844		15961	0	0	15961
S/G/Y/R/B/O	NT_034779	AC010476	155017844	3	chr5	NT_034779	AC110004	155170177	3	0	0	0	0
S/G/Y/R/B/O	NT_034779	AC010476	155017844	3			AC023546	154959756		82858	0	35741	118599
S/G/Y/R/B/O	NT_034779	AC010476	155017844	3			AC025747	154959756		22591	2551	0	25142
S/G/Y/R/B/O	NT_034779	AC110004	155170177	3	chr5	NT_034779	AC008685	155214222	3	0	0	42761	42761
S/G/Y/R/B/O	NT_034779	AC110004	155170177	3			AC023546	155214222		65265	0	0	65265
S/G/Y/R/B/O	NT_034779	AC008685	155214222	3	chr5	NT_034779	AC010591	155330831	3	0	0	0	0
S/G/Y/R/B/O	NT_034779	AC008685	155214222	3			AC023322	155214222		22741	0	0	22741
S/G/Y/R/B/O	NT_034779	AC008685	155214222	3			AC023546	155214222		28655	0	0	28655
S/G/Y/R/B/O	NT_034779	AC010591	155330831	3	chr5	NT_034779	AC008725	155440550	3	34264	0	0	34264
S/G/Y/R/B/O	NT_034779	AC010591	155330831	3			AC023322	155440550		98074	1926	0	100000
S/G/Y/R/B/O	NT_034779	AC010591	155330831	3			AC108129	155440550		87441	0	0	87441
S/G/Y/R/B/O	NT_034779	AC008725	155440550	3	chr5	NT_034779	AC108116	155533801	3	0	0	16682	16682
S/G/Y/R/B/O	NT_034779	AC008725	155440550	3			AC009483	155440550		87296	0	0	87296
S/G/Y/R/B/O	NT_034779	AC008725	155440550	3			AC023322	155330831		32692	1913	16327	50932
S/G/Y/R/B/O	NT_034779	AC008725	155440550	3			AC108129	155533801		52446	0	0	52446
S/G/Y/R/B/O	NT_034779	AC108116	155533801	3	chr5	NT_034779	AC125791	155697158	3	23004	0	0	23004
S/G/Y/R/B/O	NT_034779	AC108116	155533801	3			AC008400	155533801		117194	0	0	117194
S/G/Y/R/B/O	NT_034779	AC125791	155697158	3