Chromosome 5 - Clone Overlaps

Chromosome 5 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034766	NT_037650	NT_037651	NT_023089	NT_006576	NT_023084	NT_037652	NT_037653
NT_006547	NT_023124	NT_023085	NT_034819	NT_006679	NT_023195	NT_034769	NT_023098
NT_037654	NT_023102	NT_037655	NT_037656	NT_037657	NT_033088	NT_023081	NT_006431
NT_037658	NT_037659	NT_006713	NT_030680	NT_037660	NT_029973	NT_023148	NT_006654
NT_037661	NT_034772	NT_006899	NT_030685	NT_025702	NT_016755	NT_007072	NT_034775
NT_034776	NT_037662	NT_037663	NT_037664	NT_016714	NT_029289	NT_006859	NT_034779
NT_006788	NT_030698	NT_023133	NT_037665	NT_023132	NT_037666	NT_034860	NT_037667
NT_006519	NT_037668

NT_023148

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_023148	AC120120	92159580	3	chr5	NT_023148	AC124854	92280026	3	6102	0	0	6102
S/G/Y/R/B/O	NT_023148	AC124854	92280026	3	chr5	NT_023148	AC026780	92429231	3	0	0	0	0
S/G/Y/R/B/O	NT_023148	AC026780	92429231	3	chr5	NT_023148	AC026781	92524935	3	2496	0	0	2496
S/G/Y/R/B/O	NT_023148	AC026781	92524935	3	chr5	NT_023148	AC008517	92539863	3	14918	0	0	14918
S/G/Y/R/B/O	NT_023148	AC026781	92524935	3			AC010640	92539863		14774	0	0	14774
S/G/Y/R/B/O	NT_023148	AC008517	92539863	3	chr5	NT_023148	AC012625	92723861	3	8298	0	0	8298
S/G/Y/R/B/O	NT_023148	AC008517	92539863	3			AC010640	92429231		56306	0	13750	70056
S/G/Y/R/B/O	NT_023148	AC008517	92539863	3			AC024346	92723861		22101	0	4681	26782
S/G/Y/R/B/O	NT_023148	AC012625	92723861	3	chr5	NT_023148	AC026408	92866779	3	0	0	8524	8524
S/G/Y/R/B/O	NT_023148	AC012625	92723861	3			AC024346	92539863		74917	9328	9480	93725
S/G/Y/R/B/O	NT_023148	AC026408	92866779	3	chr5	NT_023148	AC091824	92930589	3	65493	0	0	65493
S/G/Y/R/B/O	NT_023148	AC091824	92930589	3	chr5	NT_023148	AC008500	93037058	3	0	0	48272	48272
S/G/Y/R/B/O	NT_023148	AC008500	93037058	3	chr5	NT_023148	AC012619	93252571	3	0	0	0	0
S/G/Y/R/B/O	NT_023148	AC008500	93037058	3			AC021564	92866779		131979	14140	3904	150023
S/G/Y/R/B/O	NT_023148	AC008500	93037058	3			AC108122	92930589		62481	0	0	62481
S/G/Y/R/B/O	NT_023148	AC012619	93252571	3	chr5	NT_023148	AC114961	93314837	1	54396	0	0	54396
S/G/Y/R/B/O	NT_023148	AC012619	93252571	3			AC012605	92930589		13565	0	0	13565
S/G/Y/R/B/O	NT_023148	AC012619	93252571	3			AC020919	92930589		34493	0	0	34493
S/G/Y/R/B/O	NT_023148	AC012619	93252571	3			AC021564	92930589		21385	1923	0	23308
S/G/Y/R/B/O	NT_023148	AC114961	93314837	1	chr5	NT_023148	AC106818	93337311	3	40790	0	0	40790
S/G/Y/R/B/O	NT_023148	AC114961	93314837	1			AC008516	93314837		53182	614	0	53796
S/G/Y/R/B/O	NT_023148	AC114961	93314837	1			AC012605	93314837		19016	0	15524	34540
S/G/Y/R/B/O	NT_023148	AC114961	93314837	1			AC020919	93252571		74246	0	0	74246
S/G/Y/R/B/O	NT_023148	AC114961	93314837	1			AC020933	93252571		22845	2789	4839	30473
S/G/Y/R/B/O	NT_023148	AC114961	93314837	1			AC021564	93252571		25396	1923	0	27319
S/G/Y/R/B/O	NT_023148	AC114961	93314837	1			AC024349	93252571		21284	2425	10214	33923
S/G/Y/R/B/O	NT_023148	AC106818	93337311	3	chr5	NT_023148	AC108102	93426607	3	90759	0	0	90759
S/G/Y/R/B/O	NT_023148	AC106818	93337311	3			AC008516	93337311		173068	0	0	173068
S/G/Y/R/B/O	NT_023148	AC106818	93337311	3			AC008516	93337311		173068	0	0	173068
S/G/Y/R/B/O	NT_023148	AC106818	93337311	3			AC013682	93337311		48598	1565	1709	51872
S/G/Y/R/B/O	NT_023148	AC106818	93337311	3			AC013682	93337311		48598	1565	1709	51872
S/G/Y/R/B/O	NT_023148	AC106818	93337311	3			AC024349	93337311		103393	11587	19490	134470
S/G/Y/R/B/O	NT_023148	AC106818	93337311	3			AC024349	93337311		103393	11587	19490	134470
S/G/Y/R/B/O	NT_023148	AC108102	93426607	3	chr5	NT_023148	AC099501	93587663	3	14916	0	0	14916
S/G/Y/R/B/O	NT_023148	AC108102	93426607	3			AC008516	93314837		83851	0	0	83851
S/G/Y/R/B/O	NT_023148	AC108102	93426607	3			AC013682	93314837		114560	3426	1709	119695
S/G/Y/R/B/O	NT_023148	AC108102	93426607	3			AC024349	93314837		41251	7016	1787	50054
S/G/Y/R/B/O	NT_023148	AC099501	93587663	3	chr5	NT_023148	AC114980	93616682	1	9278	0	0	9278
S/G/Y/R/B/O	NT_023148	AC099501	93587663	3			AC013682	93337311		43973	0	0	43973
S/G/Y/R/B/O	NT_023148	AC099501	93587663	3			AC106808	93337311		43952	0	0	43952
S/G/Y/R/B/O	NT_023148	AC114980	93616682	1	chr5	NT_023148	AC093268	93727426	3	36530	0	21383	57913
S/G/Y/R/B/O	NT_023148	AC114980	93616682	1			AC019025	93616682		151711	1175	9264	162150
S/G/Y/R/B/O	NT_023148	AC114980	93616682	1			AC106808	93587663		99296	0	7491	106787
S/G/Y/R/B/O	NT_023148	AC093268	93727426	3	chr5	NT_023148	AC117528	93902829	3	13327	0	0	13327
S/G/Y/R/B/O	NT_023148	AC093268	93727426	3			AC019025	93587663		44284	0	1269	45553
S/G/Y/R/B/O	NT_023148	AC093268	93727426	3			AC021807	93587663		60563	4674	6813	72050
S/G/Y/R/B/O	NT_023148	AC117528	93902829	3	chr5	NT_023148	AC104127	94033735	3	0	0	0	0
S/G/Y/R/B/O	NT_023148	AC117528	93902829	3			AC013344	93902829		51779	0	20654	72433
S/G/Y/R/B/O	NT_023148	AC117528	93902829	3			AC021484	93902829		40593	0	14112	54705
S/G/Y/R/B/O	NT_023148	AC104127	94033735	3	chr5	NT_023148	AC010448	94106383	3	19919	0	0	19919
S/G/Y/R/B/O	NT_023148	AC104127	94033735	3			AC010283	93727426		40600	0	0	40600
S/G/Y/R/B/O	NT_023148	AC104127	94033735	3			AC013344	94106383		22029	0	27296	49325
S/G/Y/R/B/O	NT_023148	AC104127	94033735	3			AC021484	94106383		105833	0	20784	126617
S/G/Y/R/B/O	NT_023148	AC010448	94106383	3	chr5	NT_023148	AC117521	94226251	3	0	0	0	0
S/G/Y/R/B/O	NT_023148	AC010448	94106383	3			AC007833	94106383		22363	1582	8240	32185
S/G/Y/R/B/O	NT_023148	AC010448	94106383	3			AC010283	94106383		137061	0	0	137061
S/G/Y/R/B/O	NT_023148	AC010448	94106383	3			AC021484	94106383		50016	0	0	50016
S/G/Y/R/B/O	NT_023148	AC117521	94226251	3	chr5	NT_023148	AC093311	94278302	3	0	0	48155	48155
S/G/Y/R/B/O	NT_023148	AC117521	94226251	3			AC007833	94033735		79448	1584	8250	89282
S/G/Y/R/B/O	NT_023148	AC117521	94226251	3			AC010283	94033735		116406	0	0	116406
S/G/Y/R/B/O	NT_023148	AC117521	94226251	3			AC021484	94033735		29948	0	0	29948
S/G/Y/R/B/O	NT_023148	AC093311	94278302	3	chr5	NT_023148	AC025766	94408706	3	0	0	0	0
S/G/Y/R/B/O	NT_023148	AC093311	94278302	3			AC007833	94278302		31380	2699	54502	88581
S/G/Y/R/B/O	NT_023148	AC093311	94278302	3			AC018806	94278302		69765	0	0	69765
S/G/Y/R/B/O	NT_023148	AC025766	94408706	3	chr5	NT_023148	AC008534	94468421	3	3490	0	0	3490
S/G/Y/R/B/O	NT_023148	AC025766	94408706	3			AC018806	94468421		55167	645	0	55812
S/G/Y/R/B/O	NT_023148	AC008534	94468421	3	chr5	NT_023148	AC012312	94718332	3	106012	0	0	106012
S/G/Y/R/B/O	NT_023148	AC008534	94468421	3			AC008932	94468421		75253	0	0	75253
S/G/Y/R/B/O	NT_023148	AC008534	94468421	3			AC011205	94468421		77437	0	0	77437
S/G/Y/R/B/O	NT_023148	AC008534	94468421	3			AC018806	94718332		51470	0	0	51470
S/G/Y/R/B/O	NT_023148	AC008534	94468421	3			AC027303	94408706		98800	2819	55407	157026
S/G/Y/R/B/O	NT_023148	AC008534	94468421	3			AC027321	94408706		12995	1925	1725	16645
S/G/Y/R/B/O	NT_023148	AC012312	94718332	3	chr5	NT_023148	AC099507	94793378	3	0	0	10156	10156
S/G/Y/R/B/O	NT_023148	AC012312	94718332	3			AC008932	94468421		132171	0	0	132171
S/G/Y/R/B/O	NT_023148	AC012312	94718332	3			AC009680	94468421		10561	0	0	10561
S/G/Y/R/B/O	NT_023148	AC012312	94718332	3			AC011205	94468421		129437	7684	13117	150238
S/G/Y/R/B/O	NT_023148	AC012312	94718332	3			AC027303	94468421		100071	2815	7756	110642
S/G/Y/R/B/O	NT_023148	AC012312	94718332	3			AC027321	94468421		10405	0	0	10405
S/G/Y/R/B/O	NT_023148	AC099507	94793378	3	chr5	NT_023148	AC010362	94970174	3	0	0	0	0
S/G/Y/R/B/O	NT_023148	AC099507	94793378	3			AC009680	94793378		17837	0	73847	91684
S/G/Y/R/B/O	NT_023148	AC099507	94793378	3			AC011205	94793378		20189	0	5846	26035
S/G/Y/R/B/O	NT_023148	AC010362	94970174	3	chr5	NT_023148	AC008573	95054809	3	0	0	0	0
S/G/Y/R/B/O	NT_023148	AC010362	94970174	3			AC008471	94718332		88147	0	0	88147
S/G/Y/R/B/O	NT_023148	AC008573	95054809	3	chr5	NT_023148	AC090071	95216622	3	38413	0	0	38413
S/G/Y/R/B/O	NT_023148	AC008573	95054809	3			AC010246	94718332		44532	0	5654	50186
S/G/Y/R/B/O	NT_023148	AC090071	95216622	3	chr5	NT_023148	AC008547	95375955	3	0	0	0	0
S/G/Y/R/B/O	NT_023148	AC090071	95216622	3			AC008930	95054809		15161	19615	10715	45491
S/G/Y/R/B/O	NT_023148	AC090071	95216622	3			AC010246	95054809		114670	2790	13478	130938
S/G/Y/R/B/O	NT_023148	AC008547	95375955	3	chr5	NT_023148	AC008840	95469499	3	14102	0	0	14102
S/G/Y/R/B/O	NT_023148	AC008547	95375955	3			AC003691	95054809		27568	0	0	27568
S/G/Y/R/B/O	NT_023148	AC008547	95375955	3			AC008511	95054809		22096	0	0	22096
S/G/Y/R/B/O	NT_023148	AC008547	95375955	3			AC110002	95469499		113932	0	0	113932
S/G/Y/R/B/O	NT_023148	AC008840	95469499	3	chr5	NT_023148	AC008821	95582142	3	25897	0	0	25897
S/G/Y/R/B/O	NT_023148	AC008840	95469499	3			AC003691	95469499		51123	0	0	51123
S/G/Y/R/B/O	NT_023148	AC008840	95469499	3			AC008511	95469499		126615	0	0	126615
S/G/Y/R/B/O	NT_023148	AC008840	95469499	3			AC110002	95582142		23282	0	0	23282
S/G/Y/R/B/O	NT_023148	AC008821	95582142	3	chr5	NT_023148	AC008592	95628342	3	111728	0	0	111728
S/G/Y/R/B/O	NT_023148	AC008821	95582142	3			AC008511	95582142		51942	0	0	51942
S/G/Y/R/B/O	NT_023148	AC008821	95582142	3			AC008924	95469499		86511	0	0	86511
S/G/Y/R/B/O	NT_023148	AC008821	95582142	3			AC021124	95469499		52414	2512	0	54926
S/G/Y/R/B/O	NT_023148	AC008592	95628342	3	chr5	NT_023148	AC025440	95821012	3	4243	0	0	4243
S/G/Y/R/B/O	NT_023148	AC008592	95628342	3			AC008924	95582142		121742	0	0	121742
S/G/Y/R/B/O	NT_023148	AC008592	95628342	3			AC021124	95582142		111008	2511	17523	131042
S/G/Y/R/B/O	NT_023148	AC025440	95821012	3	chr5	NT_023148	AC104123	95847452	3	0	0	5901	5901
S/G/Y/R/B/O	NT_023148	AC104123	95847452	3	chr5	NT_023148	AC099509	95970374	3	0	0	0	0
S/G/Y/R/B/O	NT_023148	AC099509	95970374	3	chr5	NT_023148	AC008951	96091223	3	7979	0	0	7979
S/G/Y/R/B/O	NT_023148	AC099509	95970374	3			AC116344	96091223		22596	0	23500	46096
S/G/Y/R/B/O	NT_023148	AC008951	96091223	3	chr5	NT_023148	AC108107	96197486	3	17862	0	0	17862
S/G/Y/R/B/O	NT_023148	AC008951	96091223	3			AC026143	96091223		83821	0	0	83821
S/G/Y/R/B/O	NT_023148	AC008951	96091223	3			AC116344	96197486		52914	2606	0	55520
S/G/Y/R/B/O	NT_023148	AC108107	96197486	3	chr5	NT_023148	AC104125	96291778	3	0	0	0	0
S/G/Y/R/B/O	NT_023148	AC108107	96197486	3			AC011670	96091223		80482	0	0	80482
S/G/Y/R/B/O	NT_023148	AC108107	96197486	3			AC012660	96091223		62116	1810	4789	68715
S/G/Y/R/B/O	NT_023148	AC108107	96197486	3			AC026143	96091223		85195	0	1183	86378
S/G/Y/R/B/O	NT_023148	AC104125	96291778	3	chr5	NT_023148	AC020900	96462288	3	98568	0	0	98568
S/G/Y/R/B/O	NT_023148	AC104125	96291778	3			AC008452	96091223		25130	0	16124	41254
S/G/Y/R/B/O	NT_023148	AC104125	96291778	3			AC011670	96091223		45851	3658	0	49509
S/G/Y/R/B/O	NT_023148	AC104125	96291778	3			AC012660	96091223		31039	1569	3329	35937
S/G/Y/R/B/O	NT_023148	AC104125	96291778	3			AC021432	96462288		49627	8445	14710	72782
S/G/Y/R/B/O	NT_023148	AC020900	96462288	3	chr5	NT_023148	AC008906	96547031	3	72346	0	0	72346
S/G/Y/R/B/O	NT_023148	AC020900	96462288	3			AC008452	96462288		82340	0	39887	122227
S/G/Y/R/B/O	NT_023148	AC020900	96462288	3			AC008508	96462288		25658	2378	8541	36577
S/G/Y/R/B/O	NT_023148	AC020900	96462288	3			AC008963	96547031		14365	0	0	14365
S/G/Y/R/B/O	NT_023148	AC020900	96462288	3			AC021432	96547031		38118	0	14755	52873
S/G/Y/R/B/O	NT_023148	AC020900	96462288	3			AC026435	96547031		61509	0	2542	64051
S/G/Y/R/B/O	NT_023148	AC008906	96547031	3	chr5	NT_023148	AC009126	96626426	3	78728	0	0	78728
S/G/Y/R/B/O	NT_023148	AC008906	96547031	3			AC008452	96291778		97078	0	0	97078
S/G/Y/R/B/O	NT_023148	AC008906	96547031	3			AC008508	96291778		60598	5089	48558	114245
S/G/Y/R/B/O	NT_023148	AC008906	96547031	3			AC008963	96291778		91012	2457	0	93469
S/G/Y/R/B/O	NT_023148	AC008906	96547031	3			AC009073	96291778		78728	0	0	78728
S/G/Y/R/B/O	NT_023148	AC008906	96547031	3			AC026435	96462288		138384	0	2563	140947
S/G/Y/R/B/O	NT_023148	AC009126	96626426	3	chr5	NT_023148	AC008850	96715571	3	9901	0	0	9901
S/G/Y/R/B/O	NT_023148	AC009126	96626426	3			AC008452	96462288		27902	0	0	27902
S/G/Y/R/B/O	NT_023148	AC009126	96626426	3			AC008508	96462288		42563	2705	45237	90505
S/G/Y/R/B/O	NT_023148	AC009126	96626426	3			AC008963	96547031		88818	2456	0	91274
S/G/Y/R/B/O	NT_023148	AC009126	96626426	3			AC009073	96547031		177978	0	0	177978
S/G/Y/R/B/O	NT_023148	AC009126	96626426	3			AC026435	96547031		74518	1743	0	76261
S/G/Y/R/B/O	NT_023148	AC008850	96715571	3	chr5	NT_023148	AC008865	96847376	3	61222	0	0	61222
S/G/Y/R/B/O	NT_023148	AC008850	96715571	3			AC008907	96847376		69058	0	38135	107193
S/G/Y/R/B/O	NT_023148	AC008850	96715571	3			AC008908	96847376		95665	2806	11206	109677
S/G/Y/R/B/O	NT_023148	AC008850	96715571	3			AC022114	96626426		25648	0	0	25648
S/G/Y/R/B/O	NT_023148	AC008865	96847376	3	chr5	NT_023148	AC008883	96977128	3	17490	0	0	17490
S/G/Y/R/B/O	NT_023148	AC008865	96847376	3			AC008401	96626426		47015	2846	36182	86043
S/G/Y/R/B/O	NT_023148	AC008865	96847376	3			AC008905	96977128		129367	0	0	129367
S/G/Y/R/B/O	NT_023148	AC008865	96847376	3			AC008907	96977128		40389	0	5220	45609
S/G/Y/R/B/O	NT_023148	AC008865	96847376	3			AC008908	96977128		46147	2803	0	48950
S/G/Y/R/B/O	NT_023148	AC008883	96977128	3	chr5	NT_023148	AC074133	97086749	3	0	0	0	0
S/G/Y/R/B/O	NT_023148	AC008883	96977128	3			AC008401	96977128		12538	0	10570	23108
S/G/Y/R/B/O	NT_023148	AC008883	96977128	3			AC008905	96847376		10463	0	0	10463
S/G/Y/R/B/O	NT_023148	AC074133	97086749	3	chr5	NT_023148	AC106748	97148765	3	0	0	0	0
S/G/Y/R/B/O	NT_023148	AC106748	97148765	3	chr5	NT_023148	AC108088	97295523	3	0	1670	0	1670
S/G/Y/R/B/O	NT_023148	AC106748	97148765	3			AC023526	96847376		79989	4912	27261	112162
S/G/Y/R/B/O	NT_023148	AC106748	97148765	3			AC025565	96847376		29430	0	12152	41582
S/G/Y/R/B/O	NT_023148	AC108088	97295523	3	chr5	NT_023148	AC093258	97323862	3	0	0	2068	2068
S/G/Y/R/B/O	NT_023148	AC108088	97295523	3			AC023526	97295523		11982	0	15999	27981
S/G/Y/R/B/O	NT_023148	AC093258	97323862	3	chr5	NT_023148	AC112203	97472535	3	44127	0	0	44127
S/G/Y/R/B/O	NT_023148	AC093258	97323862	3			AC010816	97148765		58392	1593	0	59985
S/G/Y/R/B/O	NT_023148	AC093258	97323862	3			AC023526	97148765		34544	8712	0	43256
S/G/Y/R/B/O	NT_023148	AC112203	97472535	3	chr5	NT_023148	AC122697	97594324	3	38615	0	0	38615
S/G/Y/R/B/O	NT_023148	AC112203	97472535	3	chr5	NT_034819	AC132801	34939727	3	38599	0	0	38599
S/G/Y/R/B/O	NT_023148	AC112203	97472535	3			AC010816	97472535		117886	2333	1121	121340
S/G/Y/R/B/O	NT_023148	AC122697	97594324	3	chr5	NT_023148	AC109480	97647525	3	50505	0	0	50505
S/G/Y/R/B/O	NT_023148	AC122697	97594324	3	chr5	NT_034819	AC132801	34939727	3	25830	0	50431	76261
S/G/Y/R/B/O	NT_023148	AC109480	97647525	3	chr5	NT_023148	AC008834	97788937	3	80698	0	0	80698
S/G/Y/R/B/O	NT_023148	AC109480	97647525	3	chr5	NT_034819	AC132801	34939727	3	15371	0	19590	34961
S/G/Y/R/B/O	NT_023148	AC008834	97788937	3	chr5	NT_023148	AC116347	97899324	3	0	0	0	0
S/G/Y/R/B/O	NT_023148	AC116347	97899324	3	chr5	NT_023148	AC134821	98014266	3	28265	0	0	28265
S/G/Y/R/B/O	NT_023148	AC134821	98014266	3