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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_006679 | AC114934 | 35293571 | 3 | chr5 | NT_006679 | AC093506 | 35407927 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006679 | AC093506 | 35407927 | 3 | chr5 | NT_006679 | AC093279 | 35466664 | 3 | 73958 | 0 | 0 | 73958 |
S/G/Y/R/B/O |
NT_006679 | AC093506 | 35407927 | 3 |   |   | AC013581 | 21118761 | | 42354 | 603 | 11617 | 54574 |
S/G/Y/R/B/O |
NT_006679 | AC093279 | 35466664 | 3 | chr5 | NT_006679 | AC114302 | 35545841 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006679 | AC093279 | 35466664 | 3 |   |   | AC013581 | 35466664 | | 71041 | 0 | 11686 | 82727 |
S/G/Y/R/B/O |
NT_006679 | AC114302 | 35545841 | 3 | chr5 | NT_006679 | AC025754 | 35574541 | 3 | 0 | 0 | 24897 | 24897 |
S/G/Y/R/B/O |
NT_006679 | AC114302 | 35545841 | 3 |   |   | AC013581 | 35407927 | | 28333 | 0 | 0 | 28333 |
S/G/Y/R/B/O |
NT_006679 | AC025754 | 35574541 | 3 | chr5 | NT_006679 | AC016602 | 35706756 | 3 | 90925 | 0 | 0 | 90925 |
S/G/Y/R/B/O |
NT_006679 | AC025754 | 35574541 | 3 |   |   | AC008950 | 35574541 | | 49097 | 0 | 0 | 49097 |
S/G/Y/R/B/O |
NT_006679 | AC016602 | 35706756 | 3 | chr5 | NT_006679 | AC026801 | 35801756 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006679 | AC016602 | 35706756 | 3 |   |   | AC008950 | 35545841 | | 111181 | 0 | 0 | 111181 |
S/G/Y/R/B/O |
NT_006679 | AC016602 | 35706756 | 3 |   |   | AC025769 | 35574541 | | 24014 | 0 | 4361 | 28375 |
S/G/Y/R/B/O |
NT_006679 | AC016602 | 35706756 | 3 |   |   | AC055815 | 35574541 | | 27718 | 1832 | 0 | 29550 |
S/G/Y/R/B/O |
NT_006679 | AC026801 | 35801756 | 3 | chr5 | NT_006679 | AC008795 | 35961614 | 3 | 41466 | 0 | 0 | 41466 |
S/G/Y/R/B/O |
NT_006679 | AC026801 | 35801756 | 3 |   |   | AC008690 | 35574541 | | 75318 | 12305 | 21029 | 108652 |
S/G/Y/R/B/O |
NT_006679 | AC026801 | 35801756 | 3 |   |   | AC008855 | 35961614 | | 15270 | 0 | 0 | 15270 |
S/G/Y/R/B/O |
NT_006679 | AC026801 | 35801756 | 3 |   |   | AC011145 | 35961614 | | 44636 | 0 | 3913 | 48549 |
S/G/Y/R/B/O |
NT_006679 | AC026801 | 35801756 | 3 |   |   | AC025769 | 35961614 | | 20685 | 5345 | 2355 | 28385 |
S/G/Y/R/B/O |
NT_006679 | AC026801 | 35801756 | 3 |   |   | AC055815 | 35961614 | | 102582 | 6006 | 1098 | 109686 |
S/G/Y/R/B/O |
NT_006679 | AC026801 | 35801756 | 3 |   |   | AC107616 | 35961614 | | 63692 | 0 | 0 | 63692 |
S/G/Y/R/B/O |
NT_006679 | AC008795 | 35961614 | 3 | chr5 | NT_006679 | AC010368 | 36033898 | 3 | 14640 | 0 | 0 | 14640 |
S/G/Y/R/B/O |
NT_006679 | AC008795 | 35961614 | 3 |   |   | AC008690 | 35961614 | | 21502 | 5226 | 0 | 26728 |
S/G/Y/R/B/O |
NT_006679 | AC008795 | 35961614 | 3 |   |   | AC011145 | 36033898 | | 69052 | 0 | 0 | 69052 |
S/G/Y/R/B/O |
NT_006679 | AC008795 | 35961614 | 3 |   |   | AC025447 | 36033898 | | 24255 | 0 | 0 | 24255 |
S/G/Y/R/B/O |
NT_006679 | AC008795 | 35961614 | 3 |   |   | AC107616 | 35801756 | | 10572 | 0 | 0 | 10572 |
S/G/Y/R/B/O |
NT_006679 | AC010368 | 36033898 | 3 | chr5 | NT_006679 | AC091851 | 36168533 | 3 | 12452 | 0 | 0 | 12452 |
S/G/Y/R/B/O |
NT_006679 | AC010368 | 36033898 | 3 |   |   | AC010375 | 35961614 | | 27746 | 0 | 0 | 27746 |
S/G/Y/R/B/O |
NT_006679 | AC010368 | 36033898 | 3 |   |   | AC011145 | 35961614 | | 49874 | 0 | 0 | 49874 |
S/G/Y/R/B/O |
NT_006679 | AC010368 | 36033898 | 3 |   |   | AC025447 | 35961614 | | 107822 | 0 | 0 | 107822 |
S/G/Y/R/B/O |
NT_006679 | AC091851 | 36168533 | 3 | chr5 | NT_006679 | AC026731 | 36311617 | 3 | 13788 | 0 | 0 | 13788 |
S/G/Y/R/B/O |
NT_006679 | AC091851 | 36168533 | 3 |   |   | AC010375 | 36033898 | | 57593 | 0 | 34811 | 92404 |
S/G/Y/R/B/O |
NT_006679 | AC026731 | 36311617 | 3 | chr5 | NT_006679 | AC027347 | 36321462 | 3 | 0 | 0 | 6143 | 6143 |
S/G/Y/R/B/O |
NT_006679 | AC027347 | 36321462 | 3 | chr5 | NT_006679 | AC008929 | 36463311 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006679 | AC008929 | 36463311 | 3 | chr5 | NT_006679 | AC116365 | 36504169 | 1 | 0 | 0 | 14500 | 14500 |
S/G/Y/R/B/O |
NT_006679 | AC008929 | 36463311 | 3 |   |   | AC034179 | 36504169 | | 46285 | 0 | 3061 | 49346 |
S/G/Y/R/B/O |
NT_006679 | AC116365 | 36504169 | 1 | chr5 | NT_006679 | AC025448 | 36584705 | 3 | 26271 | 0 | 10460 | 36731 |
S/G/Y/R/B/O |
NT_006679 | AC116365 | 36504169 | 1 |   |   | AC034179 | 36321462 | | 64401 | 7259 | 26172 | 97832 |
S/G/Y/R/B/O |
NT_006679 | AC025448 | 36584705 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_006679 | AC025448 | 36584705 | 3 |   |   | AC034179 | 36321462 | | 86828 | 2137 | 0 | 88965 |
S/G/Y/R/B/O |
NT_006679 | AC025448 | 36584705 | 3 |   |   | AC034179 | 36321462 | | 86828 | 2137 | 0 | 88965 |
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