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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_030685 | AC008628 | 115175911 | 3 | chr5 | NT_030685 | AC010226 | 115271819 | 3 | 2618 | 0 | 0 | 2618 |
S/G/Y/R/B/O |
NT_030685 | AC008628 | 115175911 | 3 |   |   | AC008587 | 114876594 | | 11902 | 0 | 0 | 11902 |
S/G/Y/R/B/O |
NT_030685 | AC008628 | 115175911 | 3 |   |   | AC020577 | 115271819 | | 24638 | 0 | 0 | 24638 |
S/G/Y/R/B/O |
NT_030685 | AC010226 | 115271819 | 3 | chr5 | NT_030685 | AC008549 | 115416339 | 3 | 11313 | 0 | 0 | 11313 |
S/G/Y/R/B/O |
NT_030685 | AC010226 | 115271819 | 3 |   |   | AC008587 | 115416339 | | 56074 | 1768 | 10411 | 68253 |
S/G/Y/R/B/O |
NT_030685 | AC010226 | 115271819 | 3 |   |   | AC010472 | 115175911 | | 19862 | 2608 | 780 | 23250 |
S/G/Y/R/B/O |
NT_030685 | AC010226 | 115271819 | 3 |   |   | AC026727 | 115175911 | | 65424 | 0 | 0 | 65424 |
S/G/Y/R/B/O |
NT_030685 | AC010226 | 115271819 | 3 |   |   | AC026789 | 115175911 | | 65424 | 0 | 0 | 65424 |
S/G/Y/R/B/O |
NT_030685 | AC010226 | 115271819 | 3 |   |   | AC091992 | 115175911 | | 76145 | 0 | 0 | 76145 |
S/G/Y/R/B/O |
NT_030685 | AC008549 | 115416339 | 3 | chr5 | NT_030685 | AC026449 | 115610367 | 3 | 89960 | 0 | 0 | 89960 |
S/G/Y/R/B/O |
NT_030685 | AC008549 | 115416339 | 3 |   |   | AC010337 | 115271819 | | 45165 | 0 | 70609 | 115774 |
S/G/Y/R/B/O |
NT_030685 | AC008549 | 115416339 | 3 |   |   | AC010472 | 115271819 | | 20993 | 1569 | 0 | 22562 |
S/G/Y/R/B/O |
NT_030685 | AC008549 | 115416339 | 3 |   |   | AC022111 | 115271819 | | 83478 | 0 | 0 | 83478 |
S/G/Y/R/B/O |
NT_030685 | AC008549 | 115416339 | 3 |   |   | AC026727 | 115610367 | | 121651 | 0 | 0 | 121651 |
S/G/Y/R/B/O |
NT_030685 | AC008549 | 115416339 | 3 |   |   | AC026789 | 115610367 | | 121651 | 0 | 0 | 121651 |
S/G/Y/R/B/O |
NT_030685 | AC008549 | 115416339 | 3 |   |   | AC091992 | 115610367 | | 62011 | 0 | 0 | 62011 |
S/G/Y/R/B/O |
NT_030685 | AC008549 | 115416339 | 3 |   |   | AC108109 | 115610367 | | 53490 | 0 | 0 | 53490 |
S/G/Y/R/B/O |
NT_030685 | AC026449 | 115610367 | 3 | chr5 | NT_030685 | AC010282 | 115633249 | 3 | 0 | 0 | 22600 | 22600 |
S/G/Y/R/B/O |
NT_030685 | AC026449 | 115610367 | 3 |   |   | AC010337 | 115633249 | | 45547 | 0 | 53712 | 99259 |
S/G/Y/R/B/O |
NT_030685 | AC026449 | 115610367 | 3 |   |   | AC022111 | 115633249 | | 84102 | 0 | 0 | 84102 |
S/G/Y/R/B/O |
NT_030685 | AC010282 | 115633249 | 3 | chr5 | NT_030685 | AC034236 | 115801526 | 3 | 40548 | 0 | 0 | 40548 |
S/G/Y/R/B/O |
NT_030685 | AC010282 | 115633249 | 3 |   |   | AC016551 | 115633249 | | 61769 | 1793 | 3811 | 67373 |
S/G/Y/R/B/O |
NT_030685 | AC010282 | 115633249 | 3 |   |   | AC108109 | 115801526 | | 115726 | 0 | 0 | 115726 |
S/G/Y/R/B/O |
NT_030685 | AC034236 | 115801526 | 3 | chr5 | NT_030685 | AC109456 | 115923200 | 3 | 20566 | 0 | 0 | 20566 |
S/G/Y/R/B/O |
NT_030685 | AC109456 | 115923200 | 3 | chr5 | NT_030685 | AC018752 | 116024452 | 3 | 71760 | 0 | 0 | 71760 |
S/G/Y/R/B/O |
NT_030685 | AC018752 | 116024452 | 3 | chr5 | NT_030685 | AC010296 | 116159238 | 3 | 0 | 0 | 67583 | 67583 |
S/G/Y/R/B/O |
NT_030685 | AC018752 | 116024452 | 3 |   |   | AC008431 | 115801526 | | 118944 | 0 | 0 | 118944 |
S/G/Y/R/B/O |
NT_030685 | AC018752 | 116024452 | 3 |   |   | AC008596 | 115801526 | | 18842 | 2177 | 29488 | 50507 |
S/G/Y/R/B/O |
NT_030685 | AC018752 | 116024452 | 3 |   |   | AC010233 | 115801526 | | 38530 | 2073 | 0 | 40603 |
S/G/Y/R/B/O |
NT_030685 | AC018752 | 116024452 | 3 |   |   | AC010497 | 116159238 | | 19037 | 0 | 0 | 19037 |
S/G/Y/R/B/O |
NT_030685 | AC010296 | 116159238 | 3 | chr5 | NT_030685 | AC008524 | 116225561 | 3 | 66213 | 0 | 0 | 66213 |
S/G/Y/R/B/O |
NT_030685 | AC010296 | 116159238 | 3 |   |   | AC010233 | 116225561 | | 104339 | 2070 | 0 | 106409 |
S/G/Y/R/B/O |
NT_030685 | AC010296 | 116159238 | 3 |   |   | AC010497 | 116225561 | | 84753 | 0 | 0 | 84753 |
S/G/Y/R/B/O |
NT_030685 | AC010296 | 116159238 | 3 |   |   | AC108124 | 116024452 | | 55450 | 0 | 1803 | 57253 |
S/G/Y/R/B/O |
NT_030685 | AC008524 | 116225561 | 3 | chr5 | NT_030685 | AC027304 | 116313315 | 3 | 73180 | 0 | 0 | 73180 |
S/G/Y/R/B/O |
NT_030685 | AC008524 | 116225561 | 3 |   |   | AC010233 | 116024452 | | 144727 | 1763 | 0 | 146490 |
S/G/Y/R/B/O |
NT_030685 | AC008524 | 116225561 | 3 |   |   | AC010497 | 116159238 | | 111925 | 0 | 0 | 111925 |
S/G/Y/R/B/O |
NT_030685 | AC008524 | 116225561 | 3 |   |   | AC108124 | 116313315 | | 143026 | 0 | 1804 | 144830 |
S/G/Y/R/B/O |
NT_030685 | AC027304 | 116313315 | 3 | chr5 | NT_030685 | AC025088 | 116350950 | 1 | 5427 | 0 | 0 | 5427 |
S/G/Y/R/B/O |
NT_030685 | AC027304 | 116313315 | 3 |   |   | AC008651 | 116225561 | | 36198 | 0 | 0 | 36198 |
S/G/Y/R/B/O |
NT_030685 | AC027304 | 116313315 | 3 |   |   | AC010233 | 116225561 | | 64679 | 1763 | 0 | 66442 |
S/G/Y/R/B/O |
NT_030685 | AC027304 | 116313315 | 3 |   |   | AC010497 | 116225561 | | 31639 | 0 | 0 | 31639 |
S/G/Y/R/B/O |
NT_030685 | AC027304 | 116313315 | 3 |   |   | AC034210 | 116350950 | | 11804 | 18142 | 24914 | 54860 |
S/G/Y/R/B/O |
NT_030685 | AC027304 | 116313315 | 3 |   |   | AC108124 | 116350950 | | 107217 | 0 | 0 | 107217 |
S/G/Y/R/B/O |
NT_030685 | AC025088 | 116350950 | 1 | chr5 | NT_030685 | AC091986 | 116392844 | 3 | 99713 | 2452 | 0 | 102165 |
S/G/Y/R/B/O |
NT_030685 | AC025088 | 116350950 | 1 | chr5 | NT_030685 | AC010267 | 116553604 | 3 | 29484 | 2465 | 0 | 31949 |
S/G/Y/R/B/O |
NT_030685 | AC025088 | 116350950 | 1 |   |   | AC008484 | 116350950 | | 44420 | 2464 | 0 | 46884 |
S/G/Y/R/B/O |
NT_030685 | AC025088 | 116350950 | 1 |   |   | AC026431 | 116553604 | | 29632 | 2452 | 0 | 32084 |
S/G/Y/R/B/O |
NT_030685 | AC025088 | 116350950 | 1 |   |   | AC126767 | 116392844 | | 112445 | 2478 | 31084 | 146007 |
S/G/Y/R/B/O |
NT_030685 | AC091986 | 116392844 | 3 | chr5 | NT_030685 | AC010267 | 116553604 | 3 | 69311 | 0 | 0 | 69311 |
S/G/Y/R/B/O |
NT_030685 | AC091986 | 116392844 | 3 |   |   | AC008484 | 116392844 | | 59271 | 0 | 0 | 59271 |
S/G/Y/R/B/O |
NT_030685 | AC091986 | 116392844 | 3 |   |   | AC026431 | 116350950 | | 69490 | 0 | 0 | 69490 |
S/G/Y/R/B/O |
NT_030685 | AC091986 | 116392844 | 3 |   |   | AC126767 | 116350950 | | 124651 | 0 | 0 | 124651 |
S/G/Y/R/B/O |
NT_030685 | AC010267 | 116553604 | 3 | chr5 | NT_030685 | AC093534 | 116670940 | 3 | 36810 | 0 | 0 | 36810 |
S/G/Y/R/B/O |
NT_030685 | AC010267 | 116553604 | 3 | chr5 | NT_030685 | AC025088 | 116350950 | 1 | 29484 | 2465 | 0 | 31949 |
S/G/Y/R/B/O |
NT_030685 | AC010267 | 116553604 | 3 |   |   | AC008484 | 116350950 | | 44467 | 0 | 0 | 44467 |
S/G/Y/R/B/O |
NT_030685 | AC010267 | 116553604 | 3 |   |   | AC020675 | 116350950 | | 117833 | 0 | 0 | 117833 |
S/G/Y/R/B/O |
NT_030685 | AC010267 | 116553604 | 3 |   |   | AC021296 | 116350950 | | 11587 | 0 | 1128 | 12715 |
S/G/Y/R/B/O |
NT_030685 | AC010267 | 116553604 | 3 |   |   | AC026431 | 116350950 | | 142812 | 0 | 0 | 142812 |
S/G/Y/R/B/O |
NT_030685 | AC010267 | 116553604 | 3 |   |   | AC126767 | 116670940 | | 33536 | 0 | 0 | 33536 |
S/G/Y/R/B/O |
NT_030685 | AC093534 | 116670940 | 3 | chr5 | NT_030685 | AC114295 | 116802622 | 3 | 7642 | 0 | 0 | 7642 |
S/G/Y/R/B/O |
NT_030685 | AC093534 | 116670940 | 3 |   |   | AC020675 | 116553604 | | 79909 | 0 | 0 | 79909 |
S/G/Y/R/B/O |
NT_030685 | AC093534 | 116670940 | 3 |   |   | AC021296 | 116553604 | | 107760 | 0 | 2776 | 110536 |
S/G/Y/R/B/O |
NT_030685 | AC114295 | 116802622 | 3 | chr5 | NT_030685 | AC093295 | 116882958 | 3 | 7425 | 0 | 0 | 7425 |
S/G/Y/R/B/O |
NT_030685 | AC114295 | 116802622 | 3 |   |   | AC021296 | 116802622 | | 16681 | 0 | 0 | 16681 |
S/G/Y/R/B/O |
NT_030685 | AC093295 | 116882958 | 3 | chr5 | NT_030685 | AC112180 | 117079364 | 3 | 89401 | 0 | 0 | 89401 |
S/G/Y/R/B/O |
NT_030685 | AC093295 | 116882958 | 3 |   |   | AC027745 | 116670940 | | 129901 | 24532 | 23884 | 178317 |
S/G/Y/R/B/O |
NT_030685 | AC112180 | 117079364 | 3 | chr5 | NT_030685 | AC010276 | 117156683 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_030685 | AC112180 | 117079364 | 3 |   |   | AC022940 | 116802622 | | 37260 | 0 | 0 | 37260 |
S/G/Y/R/B/O |
NT_030685 | AC112180 | 117079364 | 3 |   |   | AC027745 | 116802622 | | 58293 | 13529 | 2487 | 74309 |
S/G/Y/R/B/O |
NT_030685 | AC010276 | 117156683 | 3 | chr5 | NT_030685 | AC027341 | 117320130 | 3 | 30359 | 0 | 0 | 30359 |
S/G/Y/R/B/O |
NT_030685 | AC010276 | 117156683 | 3 |   |   | AC022940 | 116882958 | | 123235 | 1941 | 1034 | 126210 |
S/G/Y/R/B/O |
NT_030685 | AC010276 | 117156683 | 3 |   |   | AC024383 | 116882958 | | 36352 | 0 | 0 | 36352 |
S/G/Y/R/B/O |
NT_030685 | AC027341 | 117320130 | 3 | chr5 | NT_030685 | AC073538 | 117396674 | 3 | 28435 | 0 | 0 | 28435 |
S/G/Y/R/B/O |
NT_030685 | AC027341 | 117320130 | 3 |   |   | AC024383 | 117156683 | | 49114 | 9128 | 0 | 58242 |
S/G/Y/R/B/O |
NT_030685 | AC073538 | 117396674 | 3 | chr5 | NT_030685 | AC114322 | 117466530 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_030685 | AC073538 | 117396674 | 3 |   |   | AC024383 | 24854460 | | 34180 | 0 | 0 | 34180 |
S/G/Y/R/B/O |
NT_030685 | AC114322 | 117466530 | 3 | chr5 | NT_030685 | AC114945 | 117542576 | 3 | 36093 | 0 | 0 | 36093 |
S/G/Y/R/B/O |
NT_030685 | AC114945 | 117542576 | 3 | chr5 | NT_030685 | AC022093 | 117672151 | 3 | 40060 | 0 | 0 | 40060 |
S/G/Y/R/B/O |
NT_030685 | AC022093 | 117672151 | 3 | chr5 | NT_030685 | AC122716 | 117716647 | 1 | 29180 | 0 | 0 | 29180 |
S/G/Y/R/B/O |
NT_030685 | AC022093 | 117672151 | 3 |   |   | AC069118 | 117466530 | | 29016 | 0 | 0 | 29016 |
S/G/Y/R/B/O |
NT_030685 | AC122716 | 117716647 | 1 | chr5 | NT_030685 | AC113344 | 117842783 | 3 | 0 | 0 | 18127 | 18127 |
S/G/Y/R/B/O |
NT_030685 | AC122716 | 117716647 | 1 |   |   | AC069118 | 117672151 | | 109431 | 0 | 38718 | 148149 |
S/G/Y/R/B/O |
NT_030685 | AC113344 | 117842783 | 3 | chr5 | NT_030685 | AC131386 | 117922814 | 3 | 48956 | 0 | 0 | 48956 |
S/G/Y/R/B/O |
NT_030685 | AC113344 | 117842783 | 3 |   |   | AC022310 | 102099717 | | 83595 | 0 | 0 | 83595 |
S/G/Y/R/B/O |
NT_030685 | AC113344 | 117842783 | 3 |   |   | AC069118 | 102099717 | | 12590 | 0 | 0 | 12590 |
S/G/Y/R/B/O |
NT_030685 | AC113344 | 117842783 | 3 |   |   | AC114313 | 102099717 | | 79814 | 0 | 3771 | 83585 |
S/G/Y/R/B/O |
NT_030685 | AC131386 | 117922814 | 3 | chr5 | NT_030685 | AC136426 | 118091890 | 1 | 37903 | 0 | 0 | 37903 |
S/G/Y/R/B/O |
NT_030685 | AC131386 | 117922814 | 3 |   |   | AC022310 | 117922814 | | 129181 | 0 | 0 | 129181 |
S/G/Y/R/B/O |
NT_030685 | AC131386 | 117922814 | 3 |   |   | AC114313 | 117842783 | | 13376 | 0 | 14509 | 27885 |
S/G/Y/R/B/O |
NT_030685 | AC136426 | 118091890 | 1 |   |   |   |   |   |   |   |   |   |
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