Chromosome 5 - Clone Overlaps

Chromosome 5 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034766	NT_037650	NT_037651	NT_023089	NT_006576	NT_023084	NT_037652	NT_037653
NT_006547	NT_023124	NT_023085	NT_034819	NT_006679	NT_023195	NT_034769	NT_023098
NT_037654	NT_023102	NT_037655	NT_037656	NT_037657	NT_033088	NT_023081	NT_006431
NT_037658	NT_037659	NT_006713	NT_030680	NT_037660	NT_029973	NT_023148	NT_006654
NT_037661	NT_034772	NT_006899	NT_030685	NT_025702	NT_016755	NT_007072	NT_034775
NT_034776	NT_037662	NT_037663	NT_037664	NT_016714	NT_029289	NT_006859	NT_034779
NT_006788	NT_030698	NT_023133	NT_037665	NT_023132	NT_037666	NT_034860	NT_037667
NT_006519	NT_037668

NT_030685

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_030685	AC008628	115175911	3	chr5	NT_030685	AC010226	115271819	3	2618	0	0	2618
S/G/Y/R/B/O	NT_030685	AC008628	115175911	3			AC008587	114876594		11902	0	0	11902
S/G/Y/R/B/O	NT_030685	AC008628	115175911	3			AC020577	115271819		24638	0	0	24638
S/G/Y/R/B/O	NT_030685	AC010226	115271819	3	chr5	NT_030685	AC008549	115416339	3	11313	0	0	11313
S/G/Y/R/B/O	NT_030685	AC010226	115271819	3			AC008587	115416339		56074	1768	10411	68253
S/G/Y/R/B/O	NT_030685	AC010226	115271819	3			AC010472	115175911		19862	2608	780	23250
S/G/Y/R/B/O	NT_030685	AC010226	115271819	3			AC026727	115175911		65424	0	0	65424
S/G/Y/R/B/O	NT_030685	AC010226	115271819	3			AC026789	115175911		65424	0	0	65424
S/G/Y/R/B/O	NT_030685	AC010226	115271819	3			AC091992	115175911		76145	0	0	76145
S/G/Y/R/B/O	NT_030685	AC008549	115416339	3	chr5	NT_030685	AC026449	115610367	3	89960	0	0	89960
S/G/Y/R/B/O	NT_030685	AC008549	115416339	3			AC010337	115271819		45165	0	70609	115774
S/G/Y/R/B/O	NT_030685	AC008549	115416339	3			AC010472	115271819		20993	1569	0	22562
S/G/Y/R/B/O	NT_030685	AC008549	115416339	3			AC022111	115271819		83478	0	0	83478
S/G/Y/R/B/O	NT_030685	AC008549	115416339	3			AC026727	115610367		121651	0	0	121651
S/G/Y/R/B/O	NT_030685	AC008549	115416339	3			AC026789	115610367		121651	0	0	121651
S/G/Y/R/B/O	NT_030685	AC008549	115416339	3			AC091992	115610367		62011	0	0	62011
S/G/Y/R/B/O	NT_030685	AC008549	115416339	3			AC108109	115610367		53490	0	0	53490
S/G/Y/R/B/O	NT_030685	AC026449	115610367	3	chr5	NT_030685	AC010282	115633249	3	0	0	22600	22600
S/G/Y/R/B/O	NT_030685	AC026449	115610367	3			AC010337	115633249		45547	0	53712	99259
S/G/Y/R/B/O	NT_030685	AC026449	115610367	3			AC022111	115633249		84102	0	0	84102
S/G/Y/R/B/O	NT_030685	AC010282	115633249	3	chr5	NT_030685	AC034236	115801526	3	40548	0	0	40548
S/G/Y/R/B/O	NT_030685	AC010282	115633249	3			AC016551	115633249		61769	1793	3811	67373
S/G/Y/R/B/O	NT_030685	AC010282	115633249	3			AC108109	115801526		115726	0	0	115726
S/G/Y/R/B/O	NT_030685	AC034236	115801526	3	chr5	NT_030685	AC109456	115923200	3	20566	0	0	20566
S/G/Y/R/B/O	NT_030685	AC109456	115923200	3	chr5	NT_030685	AC018752	116024452	3	71760	0	0	71760
S/G/Y/R/B/O	NT_030685	AC018752	116024452	3	chr5	NT_030685	AC010296	116159238	3	0	0	67583	67583
S/G/Y/R/B/O	NT_030685	AC018752	116024452	3			AC008431	115801526		118944	0	0	118944
S/G/Y/R/B/O	NT_030685	AC018752	116024452	3			AC008596	115801526		18842	2177	29488	50507
S/G/Y/R/B/O	NT_030685	AC018752	116024452	3			AC010233	115801526		38530	2073	0	40603
S/G/Y/R/B/O	NT_030685	AC018752	116024452	3			AC010497	116159238		19037	0	0	19037
S/G/Y/R/B/O	NT_030685	AC010296	116159238	3	chr5	NT_030685	AC008524	116225561	3	66213	0	0	66213
S/G/Y/R/B/O	NT_030685	AC010296	116159238	3			AC010233	116225561		104339	2070	0	106409
S/G/Y/R/B/O	NT_030685	AC010296	116159238	3			AC010497	116225561		84753	0	0	84753
S/G/Y/R/B/O	NT_030685	AC010296	116159238	3			AC108124	116024452		55450	0	1803	57253
S/G/Y/R/B/O	NT_030685	AC008524	116225561	3	chr5	NT_030685	AC027304	116313315	3	73180	0	0	73180
S/G/Y/R/B/O	NT_030685	AC008524	116225561	3			AC010233	116024452		144727	1763	0	146490
S/G/Y/R/B/O	NT_030685	AC008524	116225561	3			AC010497	116159238		111925	0	0	111925
S/G/Y/R/B/O	NT_030685	AC008524	116225561	3			AC108124	116313315		143026	0	1804	144830
S/G/Y/R/B/O	NT_030685	AC027304	116313315	3	chr5	NT_030685	AC025088	116350950	1	5427	0	0	5427
S/G/Y/R/B/O	NT_030685	AC027304	116313315	3			AC008651	116225561		36198	0	0	36198
S/G/Y/R/B/O	NT_030685	AC027304	116313315	3			AC010233	116225561		64679	1763	0	66442
S/G/Y/R/B/O	NT_030685	AC027304	116313315	3			AC010497	116225561		31639	0	0	31639
S/G/Y/R/B/O	NT_030685	AC027304	116313315	3			AC034210	116350950		11804	18142	24914	54860
S/G/Y/R/B/O	NT_030685	AC027304	116313315	3			AC108124	116350950		107217	0	0	107217
S/G/Y/R/B/O	NT_030685	AC025088	116350950	1	chr5	NT_030685	AC091986	116392844	3	99713	2452	0	102165
S/G/Y/R/B/O	NT_030685	AC025088	116350950	1	chr5	NT_030685	AC010267	116553604	3	29484	2465	0	31949
S/G/Y/R/B/O	NT_030685	AC025088	116350950	1			AC008484	116350950		44420	2464	0	46884
S/G/Y/R/B/O	NT_030685	AC025088	116350950	1			AC026431	116553604		29632	2452	0	32084
S/G/Y/R/B/O	NT_030685	AC025088	116350950	1			AC126767	116392844		112445	2478	31084	146007
S/G/Y/R/B/O	NT_030685	AC091986	116392844	3	chr5	NT_030685	AC010267	116553604	3	69311	0	0	69311
S/G/Y/R/B/O	NT_030685	AC091986	116392844	3			AC008484	116392844		59271	0	0	59271
S/G/Y/R/B/O	NT_030685	AC091986	116392844	3			AC026431	116350950		69490	0	0	69490
S/G/Y/R/B/O	NT_030685	AC091986	116392844	3			AC126767	116350950		124651	0	0	124651
S/G/Y/R/B/O	NT_030685	AC010267	116553604	3	chr5	NT_030685	AC093534	116670940	3	36810	0	0	36810
S/G/Y/R/B/O	NT_030685	AC010267	116553604	3	chr5	NT_030685	AC025088	116350950	1	29484	2465	0	31949
S/G/Y/R/B/O	NT_030685	AC010267	116553604	3			AC008484	116350950		44467	0	0	44467
S/G/Y/R/B/O	NT_030685	AC010267	116553604	3			AC020675	116350950		117833	0	0	117833
S/G/Y/R/B/O	NT_030685	AC010267	116553604	3			AC021296	116350950		11587	0	1128	12715
S/G/Y/R/B/O	NT_030685	AC010267	116553604	3			AC026431	116350950		142812	0	0	142812
S/G/Y/R/B/O	NT_030685	AC010267	116553604	3			AC126767	116670940		33536	0	0	33536
S/G/Y/R/B/O	NT_030685	AC093534	116670940	3	chr5	NT_030685	AC114295	116802622	3	7642	0	0	7642
S/G/Y/R/B/O	NT_030685	AC093534	116670940	3			AC020675	116553604		79909	0	0	79909
S/G/Y/R/B/O	NT_030685	AC093534	116670940	3			AC021296	116553604		107760	0	2776	110536
S/G/Y/R/B/O	NT_030685	AC114295	116802622	3	chr5	NT_030685	AC093295	116882958	3	7425	0	0	7425
S/G/Y/R/B/O	NT_030685	AC114295	116802622	3			AC021296	116802622		16681	0	0	16681
S/G/Y/R/B/O	NT_030685	AC093295	116882958	3	chr5	NT_030685	AC112180	117079364	3	89401	0	0	89401
S/G/Y/R/B/O	NT_030685	AC093295	116882958	3			AC027745	116670940		129901	24532	23884	178317
S/G/Y/R/B/O	NT_030685	AC112180	117079364	3	chr5	NT_030685	AC010276	117156683	3	0	0	0	0
S/G/Y/R/B/O	NT_030685	AC112180	117079364	3			AC022940	116802622		37260	0	0	37260
S/G/Y/R/B/O	NT_030685	AC112180	117079364	3			AC027745	116802622		58293	13529	2487	74309
S/G/Y/R/B/O	NT_030685	AC010276	117156683	3	chr5	NT_030685	AC027341	117320130	3	30359	0	0	30359
S/G/Y/R/B/O	NT_030685	AC010276	117156683	3			AC022940	116882958		123235	1941	1034	126210
S/G/Y/R/B/O	NT_030685	AC010276	117156683	3			AC024383	116882958		36352	0	0	36352
S/G/Y/R/B/O	NT_030685	AC027341	117320130	3	chr5	NT_030685	AC073538	117396674	3	28435	0	0	28435
S/G/Y/R/B/O	NT_030685	AC027341	117320130	3			AC024383	117156683		49114	9128	0	58242
S/G/Y/R/B/O	NT_030685	AC073538	117396674	3	chr5	NT_030685	AC114322	117466530	3	0	0	0	0
S/G/Y/R/B/O	NT_030685	AC073538	117396674	3			AC024383	24854460		34180	0	0	34180
S/G/Y/R/B/O	NT_030685	AC114322	117466530	3	chr5	NT_030685	AC114945	117542576	3	36093	0	0	36093
S/G/Y/R/B/O	NT_030685	AC114945	117542576	3	chr5	NT_030685	AC022093	117672151	3	40060	0	0	40060
S/G/Y/R/B/O	NT_030685	AC022093	117672151	3	chr5	NT_030685	AC122716	117716647	1	29180	0	0	29180
S/G/Y/R/B/O	NT_030685	AC022093	117672151	3			AC069118	117466530		29016	0	0	29016
S/G/Y/R/B/O	NT_030685	AC122716	117716647	1	chr5	NT_030685	AC113344	117842783	3	0	0	18127	18127
S/G/Y/R/B/O	NT_030685	AC122716	117716647	1			AC069118	117672151		109431	0	38718	148149
S/G/Y/R/B/O	NT_030685	AC113344	117842783	3	chr5	NT_030685	AC131386	117922814	3	48956	0	0	48956
S/G/Y/R/B/O	NT_030685	AC113344	117842783	3			AC022310	102099717		83595	0	0	83595
S/G/Y/R/B/O	NT_030685	AC113344	117842783	3			AC069118	102099717		12590	0	0	12590
S/G/Y/R/B/O	NT_030685	AC113344	117842783	3			AC114313	102099717		79814	0	3771	83585
S/G/Y/R/B/O	NT_030685	AC131386	117922814	3	chr5	NT_030685	AC136426	118091890	1	37903	0	0	37903
S/G/Y/R/B/O	NT_030685	AC131386	117922814	3			AC022310	117922814		129181	0	0	129181
S/G/Y/R/B/O	NT_030685	AC131386	117922814	3			AC114313	117842783		13376	0	14509	27885
S/G/Y/R/B/O	NT_030685	AC136426	118091890	1