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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_023089 | AC092266 | 2305988 | 3 | chr5 | NT_023089 | AC026709 | 2433174 | 3 | 44110 | 0 | 0 | 44110 |
S/G/Y/R/B/O |
NT_023089 | AC092266 | 2305988 | 3 |   |   | AC021178 | 2051551 | | 82125 | 4574 | 40400 | 127099 |
S/G/Y/R/B/O |
NT_023089 | AC092266 | 2305988 | 3 |   |   | AC023388 | 2051551 | | 39021 | 0 | 21515 | 60536 |
S/G/Y/R/B/O |
NT_023089 | AC092266 | 2305988 | 3 |   |   | AC113359 | 2433174 | | 18153 | 0 | 0 | 18153 |
S/G/Y/R/B/O |
NT_023089 | AC026709 | 2433174 | 3 | chr5 | NT_023089 | AC025775 | 2572576 | 3 | 26561 | 0 | 0 | 26561 |
S/G/Y/R/B/O |
NT_023089 | AC026709 | 2433174 | 3 |   |   | AC021178 | 2433174 | | 62768 | 0 | 6956 | 69724 |
S/G/Y/R/B/O |
NT_023089 | AC026709 | 2433174 | 3 |   |   | AC021178 | 2433174 | | 62768 | 0 | 6956 | 69724 |
S/G/Y/R/B/O |
NT_023089 | AC026709 | 2433174 | 3 |   |   | AC023388 | 2433174 | | 88748 | 4574 | 14625 | 107947 |
S/G/Y/R/B/O |
NT_023089 | AC026709 | 2433174 | 3 |   |   | AC023388 | 2433174 | | 88748 | 4574 | 14625 | 107947 |
S/G/Y/R/B/O |
NT_023089 | AC026709 | 2433174 | 3 |   |   | AC025228 | 2433174 | | 55484 | 1661 | 18518 | 75663 |
S/G/Y/R/B/O |
NT_023089 | AC026709 | 2433174 | 3 |   |   | AC025228 | 2433174 | | 55484 | 1661 | 18518 | 75663 |
S/G/Y/R/B/O |
NT_023089 | AC025775 | 2572576 | 3 | chr5 | NT_023089 | AC093224 | 2641796 | 3 | 17398 | 0 | 0 | 17398 |
S/G/Y/R/B/O |
NT_023089 | AC025775 | 2572576 | 3 |   |   | AC023388 | 2305988 | | 22206 | 0 | 0 | 22206 |
S/G/Y/R/B/O |
NT_023089 | AC025775 | 2572576 | 3 |   |   | AC025228 | 2305988 | | 60560 | 7344 | 23525 | 91429 |
S/G/Y/R/B/O |
NT_023089 | AC093224 | 2641796 | 3 | chr5 | NT_023089 | AC026791 | 2683057 | 3 | 13892 | 0 | 0 | 13892 |
S/G/Y/R/B/O |
NT_023089 | AC093224 | 2641796 | 3 |   |   | AC016852 | 2641796 | | 43122 | 0 | 0 | 43122 |
S/G/Y/R/B/O |
NT_023089 | AC093224 | 2641796 | 3 |   |   | AC025228 | 2641796 | | 23260 | 0 | 7645 | 30905 |
S/G/Y/R/B/O |
NT_023089 | AC093224 | 2641796 | 3 |   |   | AC099496 | 2683057 | | 49978 | 0 | 0 | 49978 |
S/G/Y/R/B/O |
NT_023089 | AC026791 | 2683057 | 3 | chr5 | NT_023089 | AC091891 | 2823483 | 3 | 53749 | 0 | 0 | 53749 |
S/G/Y/R/B/O |
NT_023089 | AC026791 | 2683057 | 3 |   |   | AC016852 | 2683057 | | 109007 | 2443 | 16119 | 127569 |
S/G/Y/R/B/O |
NT_023089 | AC026791 | 2683057 | 3 |   |   | AC091890 | 2683057 | | 51442 | 0 | 0 | 51442 |
S/G/Y/R/B/O |
NT_023089 | AC026791 | 2683057 | 3 |   |   | AC099496 | 2641796 | | 138848 | 0 | 0 | 138848 |
S/G/Y/R/B/O |
NT_023089 | AC091891 | 2823483 | 3 | chr5 | NT_023089 | AC116359 | 2926357 | 3 | 8833 | 0 | 0 | 8833 |
S/G/Y/R/B/O |
NT_023089 | AC091891 | 2823483 | 3 |   |   | AC016852 | 2641796 | | 27695 | 2447 | 11557 | 41699 |
S/G/Y/R/B/O |
NT_023089 | AC091891 | 2823483 | 3 |   |   | AC025937 | 2641796 | | 79569 | 4742 | 2388 | 86699 |
S/G/Y/R/B/O |
NT_023089 | AC091891 | 2823483 | 3 |   |   | AC091890 | 2683057 | | 72151 | 0 | 0 | 72151 |
S/G/Y/R/B/O |
NT_023089 | AC091891 | 2823483 | 3 |   |   | AC099496 | 2683057 | | 43107 | 0 | 300 | 43407 |
S/G/Y/R/B/O |
NT_023089 | AC116359 | 2926357 | 3 | chr5 | NT_023089 | AC094105 | 2971214 | 3 | 44863 | 0 | 0 | 44863 |
S/G/Y/R/B/O |
NT_023089 | AC094105 | 2971214 | 3 | chr5 | NT_023089 | AC112192 | 3112665 | 2 | 0 | 3312 | 0 | 3312 |
S/G/Y/R/B/O |
NT_023089 | AC094105 | 2971214 | 3 |   |   | AC025324 | 2971214 | | 66065 | 0 | 0 | 66065 |
S/G/Y/R/B/O |
NT_023089 | AC094105 | 2971214 | 3 |   |   | AC025937 | 2971214 | | 31807 | 1581 | 0 | 33388 |
S/G/Y/R/B/O |
NT_023089 | AC112192 | 3112665 | 2 | chr5 | NT_023089 | AC091832 | 3147377 | 3 | 100072 | 0 | 20450 | 120522 |
S/G/Y/R/B/O |
NT_023089 | AC112192 | 3112665 | 2 | chr5 | NT_023089 | AC025460 | 3227325 | 3 | 53822 | 0 | 29868 | 83690 |
S/G/Y/R/B/O |
NT_023089 | AC112192 | 3112665 | 2 |   |   | AC018427 | 2926357 | | 113215 | 0 | 2032 | 115247 |
S/G/Y/R/B/O |
NT_023089 | AC112192 | 3112665 | 2 |   |   | AC022051 | 2926357 | | 95663 | 0 | 8508 | 104171 |
S/G/Y/R/B/O |
NT_023089 | AC112192 | 3112665 | 2 |   |   | AC025324 | 2926357 | | 35531 | 2693 | 0 | 38224 |
S/G/Y/R/B/O |
NT_023089 | AC091832 | 3147377 | 3 | chr5 | NT_023089 | AC025460 | 3227325 | 3 | 150415 | 0 | 0 | 150415 |
S/G/Y/R/B/O |
NT_023089 | AC091832 | 3147377 | 3 |   |   | AC013801 | 2971214 | | 57556 | 0 | 6363 | 63919 |
S/G/Y/R/B/O |
NT_023089 | AC091832 | 3147377 | 3 |   |   | AC018427 | 2971214 | | 158471 | 0 | 0 | 158471 |
S/G/Y/R/B/O |
NT_023089 | AC091832 | 3147377 | 3 |   |   | AC022051 | 2971214 | | 117336 | 0 | 37737 | 155073 |
S/G/Y/R/B/O |
NT_023089 | AC025460 | 3227325 | 3 | chr5 | NT_023089 | AC104121 | 3398976 | 2 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_023089 | AC025460 | 3227325 | 3 | chr5 | NT_023089 | AC112192 | 3112665 | 2 | 53822 | 0 | 29868 | 83690 |
S/G/Y/R/B/O |
NT_023089 | AC025460 | 3227325 | 3 |   |   | AC013801 | 3112665 | | 104296 | 0 | 6368 | 110664 |
S/G/Y/R/B/O |
NT_023089 | AC025460 | 3227325 | 3 |   |   | AC018427 | 3112665 | | 125115 | 0 | 0 | 125115 |
S/G/Y/R/B/O |
NT_023089 | AC025460 | 3227325 | 3 |   |   | AC022051 | 3112665 | | 84064 | 0 | 37647 | 121711 |
S/G/Y/R/B/O |
NT_023089 | AC104121 | 3398976 | 2 | chr5 | NT_023089 | AC010390 | 3500081 | 3 | 0 | 931 | 0 | 931 |
S/G/Y/R/B/O |
NT_023089 | AC104121 | 3398976 | 2 | chr5 | NT_023089 | AC026743 | 3518831 | 3 | 15647 | 0 | 23571 | 39218 |
S/G/Y/R/B/O |
NT_023089 | AC104121 | 3398976 | 2 |   |   | AC013801 | 3500081 | | 12515 | 0 | 0 | 12515 |
S/G/Y/R/B/O |
NT_023089 | AC010390 | 3500081 | 3 | chr5 | NT_023089 | AC026743 | 3518831 | 3 | 10918 | 0 | 0 | 10918 |
S/G/Y/R/B/O |
NT_023089 | AC026743 | 3518831 | 3 | chr5 | NT_023089 | AC016595 | 3679152 | 2 | 29300 | 5549 | 0 | 34849 |
S/G/Y/R/B/O |
NT_023089 | AC026743 | 3518831 | 3 | chr5 | NT_023089 | AC104121 | 3398976 | 2 | 15647 | 0 | 23571 | 39218 |
S/G/Y/R/B/O |
NT_023089 | AC016595 | 3679152 | 2 | chr5 | NT_023089 | AC091947 | 3748447 | 3 | 39455 | 0 | 0 | 39455 |
S/G/Y/R/B/O |
NT_023089 | AC016595 | 3679152 | 2 |   |   | AC010496 | 3398976 | | 63388 | 4240 | 0 | 67628 |
S/G/Y/R/B/O |
NT_023089 | AC091947 | 3748447 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_023089 | AC091947 | 3748447 | 3 | chr5 | NT_006576 | AC092319 | 3930010 | 3 | 23728 | 0 | 0 | 23728 |
S/G/Y/R/B/O |
NT_023089 | AC091947 | 3748447 | 3 | chr5 | NT_006576 | AC092319 | 3930010 | 3 | 23728 | 0 | 0 | 23728 |
S/G/Y/R/B/O |
NT_023089 | AC091947 | 3748447 | 3 |   |   | AC026903 | 3679152 | | 78778 | 4362 | 1036 | 84176 |
S/G/Y/R/B/O |
NT_023089 | AC091947 | 3748447 | 3 |   |   | AC026903 | 3679152 | | 78778 | 4362 | 1036 | 84176 |
S/G/Y/R/B/O |
NT_023089 | AC091947 | 3748447 | 3 |   |   | AC091954 | 3679152 | | 21597 | 0 | 976 | 22573 |
S/G/Y/R/B/O |
NT_023089 | AC091947 | 3748447 | 3 |   |   | AC091954 | 3679152 | | 21597 | 0 | 976 | 22573 |
S/G/Y/R/B/O |
NT_023089 | AC091947 | 3748447 | 3 |   |   | AC112201 | 3930010 | | 13555 | 1491 | 0 | 15046 |
S/G/Y/R/B/O |
NT_023089 | AC091947 | 3748447 | 3 |   |   | AC112201 | 3930010 | | 13555 | 1491 | 0 | 15046 |
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