|
|
Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
| |
|
|
|
|
Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_034819 | AC093202 | 34794344 | 1 | chr5 | NT_034819 | AC044800 | 34859889 | 1 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_034819 | AC093202 | 34794344 | 1 | chr5 | NT_037659 | AC010217 | 70647988 | 3 | 84061 | 0 | 0 | 84061 |
S/G/Y/R/B/O |
NT_034819 | AC093202 | 34794344 | 1 | chr5 | NT_037659 | AC016554 | 70586234 | 3 | 25137 | 0 | 0 | 25137 |
S/G/Y/R/B/O |
NT_034819 | AC093202 | 34794344 | 1 | chr5 | NT_034819 | AC022119 | 35147061 | 3 | 88357 | 0 | 0 | 88357 |
S/G/Y/R/B/O |
NT_034819 | AC093202 | 34794344 | 1 | chr5 | NT_037659 | AC044797 | 70395363 | 3 | 68716 | 0 | 0 | 68716 |
S/G/Y/R/B/O |
NT_034819 | AC093202 | 34794344 | 1 |   |   | AC004999 | 34611126 | | 88254 | 0 | 0 | 88254 |
S/G/Y/R/B/O |
NT_034819 | AC093202 | 34794344 | 1 |   |   | AC005031 | 34611126 | | 46531 | 0 | 0 | 46531 |
S/G/Y/R/B/O |
NT_034819 | AC093202 | 34794344 | 1 |   |   | AC010237 | 70647988 | | 39809 | 0 | 0 | 39809 |
S/G/Y/R/B/O |
NT_034819 | AC044800 | 34859889 | 1 | chr5 | NT_034819 | AC132801 | 34939727 | 3 | 20520 | 3502 | 13822 | 37844 |
S/G/Y/R/B/O |
NT_034819 | AC044800 | 34859889 | 1 | chr5 | NT_037659 | AC093247 | 70715879 | 3 | 33847 | 0 | 4682 | 38529 |
S/G/Y/R/B/O |
NT_034819 | AC044800 | 34859889 | 1 | chr5 | NT_006713 | AC108106 | 70868660 | 3 | 12175 | 0 | 0 | 12175 |
S/G/Y/R/B/O |
NT_034819 | AC044800 | 34859889 | 1 | chr5 | NT_006713 | AC108106 | 70868660 | 3 | 12175 | 0 | 0 | 12175 |
S/G/Y/R/B/O |
NT_034819 | AC044800 | 34859889 | 1 | chr5 | NT_037659 | AC108108 | 70699304 | 1 | 60206 | 0 | 7049 | 67255 |
S/G/Y/R/B/O |
NT_034819 | AC044800 | 34859889 | 1 | chr5 | NT_037652 | AC131392 | 21650034 | 1 | 12994 | 0 | 0 | 12994 |
S/G/Y/R/B/O |
NT_034819 | AC044800 | 34859889 | 1 | chr5 | NT_034819 | AC132802 | 34984358 | 3 | 12999 | 0 | 4680 | 17679 |
S/G/Y/R/B/O |
NT_034819 | AC044800 | 34859889 | 1 |   |   | AL009030 | 34984358 | | 25501 | 0 | 4681 | 30182 |
S/G/Y/R/B/O |
NT_034819 | AC044800 | 34859889 | 1 |   |   | AL161433 | 34984358 | | 30065 | 0 | 35337 | 65402 |
S/G/Y/R/B/O |
NT_034819 | AC132801 | 34939727 | 3 | chr5 | NT_034819 | AC132802 | 34984358 | 3 | 20530 | 1708 | 4928 | 27166 |
S/G/Y/R/B/O |
NT_034819 | AC132801 | 34939727 | 3 | chr5 | NT_037659 | AC093247 | 70715879 | 3 | 19895 | 0 | 4907 | 24802 |
S/G/Y/R/B/O |
NT_034819 | AC132801 | 34939727 | 3 | chr5 | NT_037659 | AC108108 | 70699304 | 1 | 20515 | 2024 | 6622 | 29161 |
S/G/Y/R/B/O |
NT_034819 | AC132801 | 34939727 | 3 | chr5 | NT_023148 | AC109480 | 97647525 | 3 | 15371 | 0 | 19590 | 34961 |
S/G/Y/R/B/O |
NT_034819 | AC132801 | 34939727 | 3 | chr5 | NT_023148 | AC112203 | 97472535 | 3 | 38599 | 0 | 0 | 38599 |
S/G/Y/R/B/O |
NT_034819 | AC132801 | 34939727 | 3 | chr5 | NT_037659 | AC118459 | 70691883 | 1 | 14003 | 0 | 4638 | 18641 |
S/G/Y/R/B/O |
NT_034819 | AC132801 | 34939727 | 3 | chr5 | NT_023148 | AC122697 | 97594324 | 3 | 25830 | 0 | 50431 | 76261 |
S/G/Y/R/B/O |
NT_034819 | AC132801 | 34939727 | 3 | chr5 | NT_037652 | AC131392 | 21650034 | 1 | 19178 | 1714 | 4911 | 25803 |
S/G/Y/R/B/O |
NT_034819 | AC132801 | 34939727 | 3 |   |   | AC010237 | 34984358 | | 14045 | 1666 | 1724 | 17435 |
S/G/Y/R/B/O |
NT_034819 | AC132801 | 34939727 | 3 |   |   | AC011244 | 34984358 | | 33466 | 4998 | 23846 | 62310 |
S/G/Y/R/B/O |
NT_034819 | AC132801 | 34939727 | 3 |   |   | AC023817 | 34984358 | | 19177 | 0 | 6632 | 25809 |
S/G/Y/R/B/O |
NT_034819 | AC132801 | 34939727 | 3 |   |   | AL009030 | 34984358 | | 19182 | 3426 | 7417 | 30025 |
S/G/Y/R/B/O |
NT_034819 | AC132801 | 34939727 | 3 |   |   | AL161433 | 34611126 | | 62675 | 3427 | 17981 | 84083 |
S/G/Y/R/B/O |
NT_034819 | AC132802 | 34984358 | 3 | chr5 | NT_034819 | AC022119 | 35147061 | 3 | 59464 | 0 | 0 | 59464 |
S/G/Y/R/B/O |
NT_034819 | AC132802 | 34984358 | 3 | chr5 | NT_034819 | AC044800 | 34859889 | 1 | 12999 | 0 | 4680 | 17679 |
S/G/Y/R/B/O |
NT_034819 | AC132802 | 34984358 | 3 | chr5 | NT_037659 | AC093247 | 70715879 | 3 | 76674 | 0 | 0 | 76674 |
S/G/Y/R/B/O |
NT_034819 | AC132802 | 34984358 | 3 | chr5 | NT_037659 | AC108108 | 70699304 | 1 | 51328 | 0 | 39105 | 90433 |
S/G/Y/R/B/O |
NT_034819 | AC132802 | 34984358 | 3 | chr5 | NT_037652 | AC131392 | 21650034 | 1 | 111030 | 0 | 0 | 111030 |
S/G/Y/R/B/O |
NT_034819 | AC132802 | 34984358 | 3 |   |   | AC010237 | 34611126 | | 124161 | 0 | 0 | 124161 |
S/G/Y/R/B/O |
NT_034819 | AC132802 | 34984358 | 3 |   |   | AC010272 | 34611126 | | 22126 | 2525 | 21846 | 46497 |
S/G/Y/R/B/O |
NT_034819 | AC132802 | 34984358 | 3 |   |   | AL009030 | 34939727 | | 115862 | 0 | 0 | 115862 |
S/G/Y/R/B/O |
NT_034819 | AC132802 | 34984358 | 3 |   |   | AL161433 | 34939727 | | 25391 | 0 | 82998 | 108389 |
S/G/Y/R/B/O |
NT_034819 | AC022119 | 35147061 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_034819 | AC022119 | 35147061 | 3 | chr5 | NT_037659 | AC010217 | 70647988 | 3 | 86005 | 0 | 0 | 86005 |
S/G/Y/R/B/O |
NT_034819 | AC022119 | 35147061 | 3 | chr5 | NT_037659 | AC016554 | 70586234 | 3 | 73719 | 0 | 0 | 73719 |
S/G/Y/R/B/O |
NT_034819 | AC022119 | 35147061 | 3 | chr5 | NT_034819 | AC093202 | 34794344 | 1 | 88357 | 0 | 0 | 88357 |
S/G/Y/R/B/O |
NT_034819 | AC022119 | 35147061 | 3 | chr5 | NT_037652 | AC131392 | 21650034 | 1 | 10745 | 0 | 0 | 10745 |
S/G/Y/R/B/O |
NT_034819 | AC022119 | 35147061 | 3 |   |   | AC004999 | 34939727 | | 96946 | 0 | 0 | 96946 |
S/G/Y/R/B/O |
NT_034819 | AC022119 | 35147061 | 3 |   |   | AC010237 | 70647988 | | 104111 | 0 | 0 | 104111 |
S/G/Y/R/B/O |
NT_034819 | AC022119 | 35147061 | 3 |   |   | AC010272 | 70647988 | | 61373 | 2525 | 18440 | 82338 |
| |
|
|
|