Chromosome 5 - Clone Overlaps

Chromosome 5 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034766	NT_037650	NT_037651	NT_023089	NT_006576	NT_023084	NT_037652	NT_037653
NT_006547	NT_023124	NT_023085	NT_034819	NT_006679	NT_023195	NT_034769	NT_023098
NT_037654	NT_023102	NT_037655	NT_037656	NT_037657	NT_033088	NT_023081	NT_006431
NT_037658	NT_037659	NT_006713	NT_030680	NT_037660	NT_029973	NT_023148	NT_006654
NT_037661	NT_034772	NT_006899	NT_030685	NT_025702	NT_016755	NT_007072	NT_034775
NT_034776	NT_037662	NT_037663	NT_037664	NT_016714	NT_029289	NT_006859	NT_034779
NT_006788	NT_030698	NT_023133	NT_037665	NT_023132	NT_037666	NT_034860	NT_037667
NT_006519	NT_037668

NT_023195

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_023195	AC116333	36789679	3	chr5	NT_023195	AC112204	36901798	1	46855	0	0	46855
S/G/Y/R/B/O	NT_023195	AC116333	36789679	3			AC025444	36504169		26105	0	0	26105
S/G/Y/R/B/O	NT_023195	AC116333	36789679	3			AC112486	36901798		28410	0	0	28410
S/G/Y/R/B/O	NT_023195	AC112204	36901798	1	chr5	NT_023195	AC016612	36970828	3	11315	0	0	11315
S/G/Y/R/B/O	NT_023195	AC112204	36901798	1			AC008860	36901798		11314	0	0	11314
S/G/Y/R/B/O	NT_023195	AC112204	36901798	1			AC008947	36901798		34851	4571	5189	44611
S/G/Y/R/B/O	NT_023195	AC112204	36901798	1			AC025444	36970828		12194	0	0	12194
S/G/Y/R/B/O	NT_023195	AC112204	36901798	1			AC112486	36970828		28437	0	0	28437
S/G/Y/R/B/O	NT_023195	AC016612	36970828	3	chr5	NT_023195	AC008942	37150341	3	0	0	0	0
S/G/Y/R/B/O	NT_023195	AC016612	36970828	3			AC008860	36789679		76056	0	0	76056
S/G/Y/R/B/O	NT_023195	AC016612	36970828	3			AC008947	36789679		23635	8911	5157	37703
S/G/Y/R/B/O	NT_023195	AC016612	36970828	3			AC026735	36789679		18403	0	0	18403
S/G/Y/R/B/O	NT_023195	AC008942	37150341	3	chr5	NT_023195	AC008807	37297793	3	68655	0	0	68655
S/G/Y/R/B/O	NT_023195	AC008807	37297793	3	chr5	NT_023195	AC114277	37355327	3	21232	0	0	21232
S/G/Y/R/B/O	NT_023195	AC008807	37297793	3			AC025476	37150341		27648	0	0	27648
S/G/Y/R/B/O	NT_023195	AC008807	37297793	3			AC026439	37150341		49066	0	0	49066
S/G/Y/R/B/O	NT_023195	AC114277	37355327	3	chr5	NT_023195	AC114950	37434590	3	5741	0	0	5741
S/G/Y/R/B/O	NT_023195	AC114277	37355327	3			AC026439	37297793		77227	0	0	77227
S/G/Y/R/B/O	NT_023195	AC114950	37434590	3	chr5	NT_023195	AC026724	37497820	3	0	0	0	0
S/G/Y/R/B/O	NT_023195	AC114950	37434590	3			AC092281	37434590		10682	0	0	10682
S/G/Y/R/B/O	NT_023195	AC026724	37497820	3	chr5	NT_023195	AC010631	37590850	3	2080	0	0	2080
S/G/Y/R/B/O	NT_023195	AC026724	37497820	3			AC090074	37590850		42161	3029	15801	60991
S/G/Y/R/B/O	NT_023195	AC026724	37497820	3			AC092281	37590850		70041	0	13708	83749
S/G/Y/R/B/O	NT_023195	AC010631	37590850	3	chr5	NT_023195	AC008957	37704396	3	14631	0	0	14631
S/G/Y/R/B/O	NT_023195	AC010631	37590850	3			AC090074	37497820		51338	2533	2090	55961
S/G/Y/R/B/O	NT_023195	AC008957	37704396	3	chr5	NT_023195	AC026463	37779066	3	21812	0	0	21812
S/G/Y/R/B/O	NT_023195	AC008957	37704396	3			AC010386	37497820		49923	0	0	49923
S/G/Y/R/B/O	NT_023195	AC026463	37779066	3	chr5	NT_023195	AC026741	37926449	3	63777	0	0	63777
S/G/Y/R/B/O	NT_023195	AC026463	37779066	3			AC010380	37704396		27390	0	0	27390
S/G/Y/R/B/O	NT_023195	AC026463	37779066	3			AC010386	37704396		73155	0	0	73155
S/G/Y/R/B/O	NT_023195	AC026463	37779066	3			AC025454	37704396		37132	0	15072	52204
S/G/Y/R/B/O	NT_023195	AC026741	37926449	3	chr5	NT_023195	AC008902	38058482	3	24329	0	0	24329
S/G/Y/R/B/O	NT_023195	AC026741	37926449	3			AC010380	38058482		95302	0	0	95302
S/G/Y/R/B/O	NT_023195	AC026741	37926449	3			AC018853	38058482		82107	6113	17087	105307
S/G/Y/R/B/O	NT_023195	AC026741	37926449	3			AC019267	38058482		38167	0	0	38167
S/G/Y/R/B/O	NT_023195	AC026741	37926449	3			AC025454	38058482		106767	0	68668	175435
S/G/Y/R/B/O	NT_023195	AC008902	38058482	3	chr5	NT_023195	AC008925	38135505	3	33736	0	0	33736
S/G/Y/R/B/O	NT_023195	AC008902	38058482	3			AC018853	38135505		42980	2533	299	45812
S/G/Y/R/B/O	NT_023195	AC008902	38058482	3			AC019267	38135505		55997	3387	40560	99944
S/G/Y/R/B/O	NT_023195	AC008902	38058482	3			AC025454	38135505		23862	0	0	23862
S/G/Y/R/B/O	NT_023195	AC008925	38135505	3	chr5	NT_023195	AC025449	38233759	3	20345	0	0	20345
S/G/Y/R/B/O	NT_023195	AC008925	38135505	3			AC019267	38058482		53173	0	4955	58128
S/G/Y/R/B/O	NT_023195	AC025449	38233759	3	chr5	NT_023195	AC008832	38412448	3	7687	0	0	7687
S/G/Y/R/B/O	NT_023195	AC025449	38233759	3			AF165926	38135505		72324	0	0	72324
S/G/Y/R/B/O	NT_023195	AC008832	38412448	3	chr5	NT_023195	AC117532	38420839	3	0	1923	0	1923
S/G/Y/R/B/O	NT_023195	AC008832	38412448	3			AF165926	38420839		16049	0	0	16049
S/G/Y/R/B/O	NT_023195	AC117532	38420839	3	chr5	NT_023195	AC025469	38596692	3	0	0	0	0
S/G/Y/R/B/O	NT_023195	AC117532	38420839	3			AC053526	38412448		41055	1919	56717	99691
S/G/Y/R/B/O	NT_023195	AC117532	38420839	3			AF165926	34720032		86727	0	0	86727
S/G/Y/R/B/O	NT_023195	AC025469	38596692	3	chr5	NT_023195	AC093269	38699849	3	0	0	0	0
S/G/Y/R/B/O	NT_023195	AC025469	38596692	3			AC068049	34720032		44990	0	17246	62236
S/G/Y/R/B/O	NT_023195	AC093269	38699849	3	chr5	NT_023195	AC008869	38825634	3	0	0	0	0
S/G/Y/R/B/O	NT_023195	AC093269	38699849	3			AC068049	34720032		34124	0	4145	38269
S/G/Y/R/B/O	NT_023195	AC008869	38825634	3	chr5	NT_023195	AC034226	39014908	3	13231	0	0	13231
S/G/Y/R/B/O	NT_023195	AC008869	38825634	3			AC108172	39014908		105078	0	0	105078
S/G/Y/R/B/O	NT_023195	AC034226	39014908	3	chr5	NT_023195	AC074129	39149723	3	64003	0	0	64003
S/G/Y/R/B/O	NT_023195	AC034226	39014908	3			AC108172	39149723		98565	0	0	98565
S/G/Y/R/B/O	NT_023195	AC074129	39149723	3	chr5	NT_023195	AC091430	39151591	3	41865	0	0	41865
S/G/Y/R/B/O	NT_023195	AC074129	39149723	3			AC108172	39151591		14753	0	0	14753
S/G/Y/R/B/O	NT_023195	AC091430	39151591	3	chr5	NT_023195	AC010338	39235734	3	4725	0	0	4725
S/G/Y/R/B/O	NT_023195	AC010338	39235734	3	chr5	NT_023195	AC010351	39336847	3	0	0	0	0
S/G/Y/R/B/O	NT_023195	AC010338	39235734	3			AC016341	39149723		36917	817	0	37734
S/G/Y/R/B/O	NT_023195	AC010338	39235734	3			AC024280	39149723		38821	0	0	38821
S/G/Y/R/B/O	NT_023195	AC010351	39336847	3	chr5	NT_023195	AC091839	39437372	3	53245	0	0	53245
S/G/Y/R/B/O	NT_023195	AC010351	39336847	3			AC016341	39151591		104286	2099	12528	118913
S/G/Y/R/B/O	NT_023195	AC091839	39437372	3	chr5	NT_023195	AC010457	39517851	3	21262	0	0	21262
S/G/Y/R/B/O	NT_023195	AC091839	39437372	3			AC016341	39517851		52603	449	19944	72996
S/G/Y/R/B/O	NT_023195	AC091839	39437372	3			AC024280	39517851		26940	2643	34567	64150
S/G/Y/R/B/O	NT_023195	AC091839	39437372	3			AC090076	39517851		67024	2341	1484	70849
S/G/Y/R/B/O	NT_023195	AC010457	39517851	3	chr5	NT_023195	AC091823	39576550	3	29558	0	0	29558
S/G/Y/R/B/O	NT_023195	AC010457	39517851	3			AC090076	39517851		67678	1791	0	69469
S/G/Y/R/B/O	NT_023195	AC091823	39576550	3	chr5	NT_023195	AC010425	39681541	3	19019	0	0	19019
S/G/Y/R/B/O	NT_023195	AC091823	39576550	3			AC016324	39517851		85779	4403	14699	104881
S/G/Y/R/B/O	NT_023195	AC091823	39576550	3			AC090076	39517851		44433	0	5533	49966
S/G/Y/R/B/O	NT_023195	AC010425	39681541	3	chr5	NT_023195	AC091435	39769981	3	0	0	0	0
S/G/Y/R/B/O	NT_023195	AC091435	39769981	3	chr5	NT_023195	AC026713	39898210	3	23062	0	0	23062
S/G/Y/R/B/O	NT_023195	AC091435	39769981	3			AC010938	39576550		22426	2212	0	24638
S/G/Y/R/B/O	NT_023195	AC091435	39769981	3			AC016719	39576550		13314	0	0	13314
S/G/Y/R/B/O	NT_023195	AC026713	39898210	3	chr5	NT_023195	AC109467	40007568	3	0	0	0	0
S/G/Y/R/B/O	NT_023195	AC026713	39898210	3			AC010938	39898210		52988	6923	0	59911
S/G/Y/R/B/O	NT_023195	AC109467	40007568	3
S/G/Y/R/B/O	NT_023195	AC109467	40007568	3	chr5	NT_034769	AC008964	40072005	3	15823	0	0	15823
S/G/Y/R/B/O	NT_023195	AC109467	40007568	3			AC010938	40072005		30190	1733	0	31923
S/G/Y/R/B/O	NT_023195	AC109467	40007568	3			AC016719	40072005		19222	0	0	19222