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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_037659 | AC010273 | 69894231 | 3 | chr5 | NT_037659 | AC022107 | 70038999 | 3 | 83185 | 0 | 0 | 83185 |
S/G/Y/R/B/O |
NT_037659 | AC010273 | 69894231 | 3 |   |   | AC023629 | 70038999 | | 67672 | 13211 | 8434 | 89317 |
S/G/Y/R/B/O |
NT_037659 | AC010273 | 69894231 | 3 |   |   | AC024583 | 70038999 | | 17288 | 0 | 5457 | 22745 |
S/G/Y/R/B/O |
NT_037659 | AC022107 | 70038999 | 3 | chr5 | NT_037659 | AC093223 | 70078090 | 3 | 7393 | 0 | 0 | 7393 |
S/G/Y/R/B/O |
NT_037659 | AC022107 | 70038999 | 3 |   |   | AC023629 | 69894231 | | 50463 | 13240 | 16760 | 80463 |
S/G/Y/R/B/O |
NT_037659 | AC022107 | 70038999 | 3 |   |   | AC024583 | 69894231 | | 56042 | 0 | 5460 | 61502 |
S/G/Y/R/B/O |
NT_037659 | AC093223 | 70078090 | 3 | chr5 | NT_037659 | AC109996 | 70196674 | 3 | 3956 | 0 | 0 | 3956 |
S/G/Y/R/B/O |
NT_037659 | AC093223 | 70078090 | 3 |   |   | AC024583 | 70038999 | | 15626 | 1541 | 37867 | 55034 |
S/G/Y/R/B/O |
NT_037659 | AC109996 | 70196674 | 3 | chr5 | NT_037659 | AC010355 | 70245213 | 3 | 36732 | 0 | 0 | 36732 |
S/G/Y/R/B/O |
NT_037659 | AC109996 | 70196674 | 3 |   |   | AC015470 | 70245213 | | 55538 | 7788 | 5834 | 69160 |
S/G/Y/R/B/O |
NT_037659 | AC010355 | 70245213 | 3 | chr5 | NT_037659 | AC044797 | 70395363 | 3 | 48047 | 0 | 0 | 48047 |
S/G/Y/R/B/O |
NT_037659 | AC010355 | 70245213 | 3 |   |   | AC015470 | 70078090 | | 63188 | 2308 | 8235 | 73731 |
S/G/Y/R/B/O |
NT_037659 | AC044797 | 70395363 | 3 | chr5 | NT_037659 | AC016554 | 70586234 | 3 | 50759 | 0 | 0 | 50759 |
S/G/Y/R/B/O |
NT_037659 | AC044797 | 70395363 | 3 | chr5 | NT_037659 | AC010217 | 70647988 | 3 | 63087 | 0 | 0 | 63087 |
S/G/Y/R/B/O |
NT_037659 | AC044797 | 70395363 | 3 | chr5 | NT_034819 | AC093202 | 34794344 | 1 | 68716 | 0 | 0 | 68716 |
S/G/Y/R/B/O |
NT_037659 | AC044797 | 70395363 | 3 |   |   | AC004999 | 70196674 | | 73985 | 0 | 0 | 73985 |
S/G/Y/R/B/O |
NT_037659 | AC044797 | 70395363 | 3 |   |   | AC005031 | 70196674 | | 82841 | 0 | 0 | 82841 |
S/G/Y/R/B/O |
NT_037659 | AC044797 | 70395363 | 3 |   |   | AC010272 | 70647988 | | 13590 | 0 | 8864 | 22454 |
S/G/Y/R/B/O |
NT_037659 | AC044797 | 70395363 | 3 |   |   | AC011244 | 70245213 | | 18949 | 0 | 19495 | 38444 |
S/G/Y/R/B/O |
NT_037659 | AC044797 | 70395363 | 3 |   |   | AC012369 | 70245213 | | 36166 | 1987 | 4917 | 43070 |
S/G/Y/R/B/O |
NT_037659 | AC044797 | 70395363 | 3 |   |   | AC109487 | 34794344 | | 63460 | 0 | 0 | 63460 |
S/G/Y/R/B/O |
NT_037659 | AC016554 | 70586234 | 3 | chr5 | NT_037659 | AC010217 | 70647988 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_037659 | AC016554 | 70586234 | 3 | chr5 | NT_034819 | AC022119 | 35147061 | 3 | 73719 | 0 | 0 | 73719 |
S/G/Y/R/B/O |
NT_037659 | AC016554 | 70586234 | 3 | chr5 | NT_034819 | AC093202 | 34794344 | 1 | 25137 | 0 | 0 | 25137 |
S/G/Y/R/B/O |
NT_037659 | AC016554 | 70586234 | 3 | chr5 | NT_037659 | AC118459 | 70691883 | 1 | 24418 | 0 | 0 | 24418 |
S/G/Y/R/B/O |
NT_037659 | AC016554 | 70586234 | 3 |   |   | AC004999 | 34939727 | | 106113 | 0 | 0 | 106113 |
S/G/Y/R/B/O |
NT_037659 | AC016554 | 70586234 | 3 |   |   | AC005031 | 34939727 | | 29773 | 0 | 0 | 29773 |
S/G/Y/R/B/O |
NT_037659 | AC016554 | 70586234 | 3 |   |   | AC010237 | 34939727 | | 22398 | 0 | 0 | 22398 |
S/G/Y/R/B/O |
NT_037659 | AC016554 | 70586234 | 3 |   |   | AC010272 | 34939727 | | 12379 | 2367 | 11273 | 26019 |
S/G/Y/R/B/O |
NT_037659 | AC010217 | 70647988 | 3 | chr5 | NT_037659 | AC118459 | 70691883 | 1 | 68192 | 0 | 0 | 68192 |
S/G/Y/R/B/O |
NT_037659 | AC010217 | 70647988 | 3 | chr5 | NT_034819 | AC022119 | 35147061 | 3 | 86005 | 0 | 0 | 86005 |
S/G/Y/R/B/O |
NT_037659 | AC010217 | 70647988 | 3 | chr5 | NT_037659 | AC044797 | 70395363 | 3 | 63087 | 0 | 0 | 63087 |
S/G/Y/R/B/O |
NT_037659 | AC010217 | 70647988 | 3 | chr5 | NT_034819 | AC093202 | 34794344 | 1 | 84061 | 0 | 0 | 84061 |
S/G/Y/R/B/O |
NT_037659 | AC010217 | 70647988 | 3 | chr5 | NT_037652 | AC131392 | 21650034 | 1 | 10765 | 0 | 0 | 10765 |
S/G/Y/R/B/O |
NT_037659 | AC010217 | 70647988 | 3 |   |   | AC004999 | 70691883 | | 118468 | 0 | 0 | 118468 |
S/G/Y/R/B/O |
NT_037659 | AC010217 | 70647988 | 3 |   |   | AC005031 | 70691883 | | 42073 | 0 | 0 | 42073 |
S/G/Y/R/B/O |
NT_037659 | AC010217 | 70647988 | 3 |   |   | AC010272 | 70691883 | | 26974 | 4836 | 18512 | 50322 |
S/G/Y/R/B/O |
NT_037659 | AC118459 | 70691883 | 1 | chr5 | NT_037659 | AC108108 | 70699304 | 1 | 6809 | 0 | 39098 | 45907 |
S/G/Y/R/B/O |
NT_037659 | AC118459 | 70691883 | 1 | chr5 | NT_037659 | AC016554 | 70586234 | 3 | 24418 | 0 | 0 | 24418 |
S/G/Y/R/B/O |
NT_037659 | AC118459 | 70691883 | 1 | chr5 | NT_037659 | AC093247 | 70715879 | 3 | 30661 | 0 | 0 | 30661 |
S/G/Y/R/B/O |
NT_037659 | AC118459 | 70691883 | 1 | chr5 | NT_037652 | AC131392 | 21650034 | 1 | 65753 | 0 | 2755 | 68508 |
S/G/Y/R/B/O |
NT_037659 | AC118459 | 70691883 | 1 | chr5 | NT_034819 | AC132801 | 34939727 | 3 | 14003 | 0 | 4638 | 18641 |
S/G/Y/R/B/O |
NT_037659 | AC118459 | 70691883 | 1 |   |   | AC004999 | 21650034 | | 17786 | 0 | 0 | 17786 |
S/G/Y/R/B/O |
NT_037659 | AC118459 | 70691883 | 1 |   |   | AC010272 | 70647988 | | 22050 | 2522 | 0 | 24572 |
S/G/Y/R/B/O |
NT_037659 | AC118459 | 70691883 | 1 |   |   | AC012369 | 70647988 | | 43946 | 0 | 0 | 43946 |
S/G/Y/R/B/O |
NT_037659 | AC118459 | 70691883 | 1 |   |   | AC109487 | 70699304 | | 43993 | 0 | 0 | 43993 |
S/G/Y/R/B/O |
NT_037659 | AC118459 | 70691883 | 1 |   |   | AL009030 | 34984358 | | 51360 | 1540 | 5128 | 58028 |
S/G/Y/R/B/O |
NT_037659 | AC118459 | 70691883 | 1 |   |   | AL161433 | 34611126 | | 25458 | 4571 | 42265 | 72294 |
S/G/Y/R/B/O |
NT_037659 | AC108108 | 70699304 | 1 | chr5 | NT_037659 | AC093247 | 70715879 | 3 | 74132 | 0 | 0 | 74132 |
S/G/Y/R/B/O |
NT_037659 | AC108108 | 70699304 | 1 | chr5 | NT_034819 | AC044800 | 34859889 | 1 | 60206 | 0 | 7049 | 67255 |
S/G/Y/R/B/O |
NT_037659 | AC108108 | 70699304 | 1 | chr5 | NT_037652 | AC131392 | 21650034 | 1 | 98374 | 0 | 13581 | 111955 |
S/G/Y/R/B/O |
NT_037659 | AC108108 | 70699304 | 1 | chr5 | NT_034819 | AC132801 | 34939727 | 3 | 20515 | 2024 | 6622 | 29161 |
S/G/Y/R/B/O |
NT_037659 | AC108108 | 70699304 | 1 | chr5 | NT_034819 | AC132802 | 34984358 | 3 | 51328 | 0 | 39105 | 90433 |
S/G/Y/R/B/O |
NT_037659 | AC108108 | 70699304 | 1 |   |   | AC010237 | 34611126 | | 52392 | 0 | 0 | 52392 |
S/G/Y/R/B/O |
NT_037659 | AC108108 | 70699304 | 1 |   |   | AC023817 | 34611126 | | 64302 | 0 | 0 | 64302 |
S/G/Y/R/B/O |
NT_037659 | AC108108 | 70699304 | 1 |   |   | AL009030 | 34984358 | | 128001 | 0 | 4759 | 132760 |
S/G/Y/R/B/O |
NT_037659 | AC108108 | 70699304 | 1 |   |   | AL161433 | 34611126 | | 75184 | 1599 | 28112 | 104895 |
S/G/Y/R/B/O |
NT_037659 | AC093247 | 70715879 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_037659 | AC093247 | 70715879 | 3 | chr5 | NT_034819 | AC044800 | 34859889 | 1 | 33847 | 0 | 4682 | 38529 |
S/G/Y/R/B/O |
NT_037659 | AC093247 | 70715879 | 3 | chr5 | NT_037659 | AC118459 | 70691883 | 1 | 30661 | 0 | 0 | 30661 |
S/G/Y/R/B/O |
NT_037659 | AC093247 | 70715879 | 3 | chr5 | NT_037652 | AC131392 | 21650034 | 1 | 77765 | 0 | 0 | 77765 |
S/G/Y/R/B/O |
NT_037659 | AC093247 | 70715879 | 3 | chr5 | NT_034819 | AC132801 | 34939727 | 3 | 19895 | 0 | 4907 | 24802 |
S/G/Y/R/B/O |
NT_037659 | AC093247 | 70715879 | 3 | chr5 | NT_034819 | AC132802 | 34984358 | 3 | 76674 | 0 | 0 | 76674 |
S/G/Y/R/B/O |
NT_037659 | AC093247 | 70715879 | 3 |   |   | AC010237 | 34611126 | | 38177 | 0 | 0 | 38177 |
S/G/Y/R/B/O |
NT_037659 | AC093247 | 70715879 | 3 |   |   | AL009030 | 34984358 | | 102061 | 0 | 0 | 102061 |
S/G/Y/R/B/O |
NT_037659 | AC093247 | 70715879 | 3 |   |   | AL161433 | 34984358 | | 16410 | 0 | 64085 | 80495 |
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