Chromosome 5 - Clone Overlaps

Chromosome 5 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034766	NT_037650	NT_037651	NT_023089	NT_006576	NT_023084	NT_037652	NT_037653
NT_006547	NT_023124	NT_023085	NT_034819	NT_006679	NT_023195	NT_034769	NT_023098
NT_037654	NT_023102	NT_037655	NT_037656	NT_037657	NT_033088	NT_023081	NT_006431
NT_037658	NT_037659	NT_006713	NT_030680	NT_037660	NT_029973	NT_023148	NT_006654
NT_037661	NT_034772	NT_006899	NT_030685	NT_025702	NT_016755	NT_007072	NT_034775
NT_034776	NT_037662	NT_037663	NT_037664	NT_016714	NT_029289	NT_006859	NT_034779
NT_006788	NT_030698	NT_023133	NT_037665	NT_023132	NT_037666	NT_034860	NT_037667
NT_006519	NT_037668

NT_023124

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_023124	AC126769	28052898	3	chr5	NT_023124	AC116349	28122905	3	2762	0	0	2762
S/G/Y/R/B/O	NT_023124	AC116349	28122905	3	chr5	NT_023124	AC093252	28285033	3	0	0	0	0
S/G/Y/R/B/O	NT_023124	AC116349	28122905	3			AC093285	28122905		20472	0	31443	51915
S/G/Y/R/B/O	NT_023124	AC093252	28285033	3	chr5	NT_023124	AC114957	28320025	3	0	0	0	0
S/G/Y/R/B/O	NT_023124	AC093252	28285033	3			AC093285	28052898		49216	0	31256	80472
S/G/Y/R/B/O	NT_023124	AC114957	28320025	3	chr5	NT_023124	AC010455	28350283	3	0	0	0	0
S/G/Y/R/B/O	NT_023124	AC010455	28350283	3	chr5	NT_023124	AC025452	28449679	3	0	0	0	0
S/G/Y/R/B/O	NT_023124	AC025452	28449679	3	chr5	NT_023124	AC093300	28566313	3	21565	0	0	21565
S/G/Y/R/B/O	NT_023124	AC093300	28566313	3	chr5	NT_023124	AC026705	28671852	3	6072	0	0	6072
S/G/Y/R/B/O	NT_023124	AC026705	28671852	3	chr5	NT_023124	AC010371	28744944	3	5266	0	0	5266
S/G/Y/R/B/O	NT_023124	AC026705	28671852	3			AC090067	28744944		52424	5041	0	57465
S/G/Y/R/B/O	NT_023124	AC010371	28744944	3	chr5	NT_023124	AC106740	28801706	3	0	0	0	0
S/G/Y/R/B/O	NT_023124	AC010371	28744944	3			AC090067	28671852		31351	0	0	31351
S/G/Y/R/B/O	NT_023124	AC106740	28801706	3	chr5	NT_023124	AC114293	28912172	3	9543	0	0	9543
S/G/Y/R/B/O	NT_023124	AC106740	28801706	3			AC090067	28671852		17754	0	0	17754
S/G/Y/R/B/O	NT_023124	AC114293	28912172	3	chr5	NT_023124	AC122717	28954746	3	0	0	0	0
S/G/Y/R/B/O	NT_023124	AC122717	28954746	3	chr5	NT_023124	AC109472	29057036	2	0	0	0	0
S/G/Y/R/B/O	NT_023124	AC109472	29057036	2	chr5	NT_023124	AC008825	29107061	3	87046	1434	0	88480
S/G/Y/R/B/O	NT_023124	AC109472	29057036	2	chr5	NT_023124	AC009757	29262556	3	34221	0	0	34221
S/G/Y/R/B/O	NT_023124	AC008825	29107061	3	chr5	NT_023124	AC009757	29262556	3	100271	0	0	100271
S/G/Y/R/B/O	NT_023124	AC009757	29262556	3	chr5	NT_023124	AC010385	29329070	3	11097	0	0	11097
S/G/Y/R/B/O	NT_023124	AC009757	29262556	3	chr5	NT_023124	AC109472	29057036	2	34221	0	0	34221
S/G/Y/R/B/O	NT_023124	AC009757	29262556	3			AC026792	29329070		64227	0	0	64227
S/G/Y/R/B/O	NT_023124	AC010385	29329070	3	chr5	NT_023124	AC024589	29412965	3	5780	0	0	5780
S/G/Y/R/B/O	NT_023124	AC010385	29329070	3			AC011213	29262556		35792	4167	14385	54344
S/G/Y/R/B/O	NT_023124	AC024589	29412965	3	chr5	NT_023124	AC112172	29577433	3	4274	0	0	4274
S/G/Y/R/B/O	NT_023124	AC024589	29412965	3			AC011213	29329070		36575	4580	1002	42157
S/G/Y/R/B/O	NT_023124	AC024589	29412965	3			AC025771	29329070		93493	0	0	93493
S/G/Y/R/B/O	NT_023124	AC112172	29577433	3	chr5	NT_023124	AC106784	29701396	2	31190	0	0	31190
S/G/Y/R/B/O	NT_023124	AC112172	29577433	3			AC025771	29412965		35676	0	0	35676
S/G/Y/R/B/O	NT_023124	AC112172	29577433	3			AC087219	29412965		61872	0	0	61872
S/G/Y/R/B/O	NT_023124	AC106784	29701396	2	chr5	NT_023124	AC010340	29772883	3	63615	0	0	63615
S/G/Y/R/B/O	NT_023124	AC010340	29772883	3	chr5	NT_023124	AC027345	29876036	3	6726	0	0	6726
S/G/Y/R/B/O	NT_023124	AC027345	29876036	3	chr5	NT_023124	AC114323	30001908	3	0	0	0	0
S/G/Y/R/B/O	NT_023124	AC027345	29876036	3			AC016808	29772883		76521	0	0	76521
S/G/Y/R/B/O	NT_023124	AC114323	30001908	3	chr5	NT_023124	AC099486	30101791	3	28060	0	0	28060
S/G/Y/R/B/O	NT_023124	AC114323	30001908	3			AC016808	29772883		87009	0	9418	96427
S/G/Y/R/B/O	NT_023124	AC099486	30101791	3	chr5	NT_023124	AC108082	30185924	3	0	0	0	0
S/G/Y/R/B/O	NT_023124	AC099486	30101791	3			AC020725	30101791		19839	4302	27322	51463
S/G/Y/R/B/O	NT_023124	AC108082	30185924	3	chr5	NT_023124	AC010374	30291488	3	12311	0	0	12311
S/G/Y/R/B/O	NT_023124	AC108082	30185924	3			AC020725	30291488		53329	0	10512	63841
S/G/Y/R/B/O	NT_023124	AC010374	30291488	3	chr5	NT_023124	AC018765	30396549	3	0	0	18745	18745
S/G/Y/R/B/O	NT_023124	AC018765	30396549	3	chr5	NT_023124	AC091856	30510516	3	0	888	0	888
S/G/Y/R/B/O	NT_023124	AC018765	30396549	3			AC010418	30291488		88018	0	0	88018
S/G/Y/R/B/O	NT_023124	AC091856	30510516	3	chr5	NT_023124	AC114300	30684848	3	0	0	0	0
S/G/Y/R/B/O	NT_023124	AC114300	30684848	3	chr5	NT_023124	AC116309	30819561	3	8845	0	0	8845
S/G/Y/R/B/O	NT_023124	AC114300	30684848	3			AC106735	30396549		33805	0	2434	36239
S/G/Y/R/B/O	NT_023124	AC116309	30819561	3	chr5	NT_023124	AC025757	30965163	3	65496	0	0	65496
S/G/Y/R/B/O	NT_023124	AC116309	30819561	3			AC106735	30965163		90770	0	0	90770
S/G/Y/R/B/O	NT_023124	AC025757	30965163	3	chr5	NT_023124	AC099517	31065878	3	0	0	0	0
S/G/Y/R/B/O	NT_023124	AC025757	30965163	3			AC011278	30684848		26210	0	0	26210
S/G/Y/R/B/O	NT_023124	AC025757	30965163	3			AC012287	30684848		13218	0	0	13218
S/G/Y/R/B/O	NT_023124	AC099517	31065878	3	chr5	NT_023124	AC113429	31176985	3	0	0	0	0
S/G/Y/R/B/O	NT_023124	AC099517	31065878	3			AC011278	30819561		91613	0	0	91613
S/G/Y/R/B/O	NT_023124	AC099517	31065878	3			AC012287	30819561		107528	2098	1231	110857
S/G/Y/R/B/O	NT_023124	AC099517	31065878	3			AC112194	30819561		34632	2786	19660	57078
S/G/Y/R/B/O	NT_023124	AC113429	31176985	3	chr5	NT_023124	AC026433	31184128	3	0	1072	0	1072
S/G/Y/R/B/O	NT_023124	AC026433	31184128	3	chr5	NT_023124	AC091854	31280007	3	26047	0	0	26047
S/G/Y/R/B/O	NT_023124	AC091854	31280007	3	chr5	NT_023124	AC026421	31363498	3	13670	0	0	13670
S/G/Y/R/B/O	NT_023124	AC091854	31280007	3			AC078928	31184128		38095	0	42037	80132
S/G/Y/R/B/O	NT_023124	AC091854	31280007	3			AC093215	31184128		46119	0	9498	55617
S/G/Y/R/B/O	NT_023124	AC026421	31363498	3	chr5	NT_023124	AC091867	31520183	3	8995	0	0	8995
S/G/Y/R/B/O	NT_023124	AC026421	31363498	3			AC078928	31184128		77695	0	0	77695
S/G/Y/R/B/O	NT_023124	AC091867	31520183	3	chr5	NT_023124	AC113386	31609370	3	32155	0	0	32155
S/G/Y/R/B/O	NT_023124	AC113386	31609370	3	chr5	NT_023124	AC091898	31687149	3	57297	0	0	57297
S/G/Y/R/B/O	NT_023124	AC091898	31687149	3	chr5	NT_023124	AC008768	31807483	3	25865	0	0	25865
S/G/Y/R/B/O	NT_023124	AC091898	31687149	3			AC008159	31687149		69148	0	0	69148
S/G/Y/R/B/O	NT_023124	AC091898	31687149	3			AC022132	31807483		41582	0	0	41582
S/G/Y/R/B/O	NT_023124	AC091898	31687149	3			AC026712	31807483		41582	0	0	41582
S/G/Y/R/B/O	NT_023124	AC091898	31687149	3			AC026728	31807483		37057	0	0	37057
S/G/Y/R/B/O	NT_023124	AC008768	31807483	3	chr5	NT_023124	AC106802	31920599	3	9753	0	0	9753
S/G/Y/R/B/O	NT_023124	AC008768	31807483	3			AC008159	31609370		64147	0	69936	134083
S/G/Y/R/B/O	NT_023124	AC008768	31807483	3			AC022132	31609370		96357	0	0	96357
S/G/Y/R/B/O	NT_023124	AC008768	31807483	3			AC026712	31609370		96357	0	0	96357
S/G/Y/R/B/O	NT_023124	AC008768	31807483	3			AC026728	31609370		47195	0	0	47195
S/G/Y/R/B/O	NT_023124	AC106802	31920599	3	chr5	NT_023124	AC022417	31973143	3	0	0	23251	23251
S/G/Y/R/B/O	NT_023124	AC022417	31973143	3	chr5	NT_023124	AC022447	32073787	3	5165	0	0	5165
S/G/Y/R/B/O	NT_023124	AC022447	32073787	3	chr5	NT_023124	AC010469	32211628	3	25830	0	0	25830
S/G/Y/R/B/O	NT_023124	AC022447	32073787	3			AC010363	31920599		115732	0	0	115732
S/G/Y/R/B/O	NT_023124	AC010469	32211628	3	chr5	NT_023124	AC025458	32306579	3	0	0	0	0
S/G/Y/R/B/O	NT_023124	AC010469	32211628	3			AC026718	32073787		44876	0	18101	62977
S/G/Y/R/B/O	NT_023124	AC025458	32306579	3	chr5	NT_023124	AC010449	32414901	3	2189	0	0	2189
S/G/Y/R/B/O	NT_023124	AC025458	32306579	3			AC026718	32414901		25635	0	21630	47265
S/G/Y/R/B/O	NT_023124	AC025458	32306579	3			AC027330	32414901		103473	0	13988	117461
S/G/Y/R/B/O	NT_023124	AC010449	32414901	3	chr5	NT_023124	AC025178	32491227	3	2257	0	0	2257
S/G/Y/R/B/O	NT_023124	AC025178	32491227	3	chr5	NT_023124	AC022444	32626222	3	20910	0	0	20910
S/G/Y/R/B/O	NT_023124	AC025178	32491227	3	chr5	NT_023124	AC025181	32650409	2	14926	0	0	14926
S/G/Y/R/B/O	NT_023124	AC025178	32491227	3			AC008803	32306579		24131	0	16992	41123
S/G/Y/R/B/O	NT_023124	AC025178	32491227	3			AC022423	32414901		78925	0	21341	100266
S/G/Y/R/B/O	NT_023124	AC022444	32626222	3	chr5	NT_023124	AC025181	32650409	2	39038	0	0	39038
S/G/Y/R/B/O	NT_023124	AC025181	32650409	2	chr5	NT_023124	AC091961	32691521	3	0	0	0	0
S/G/Y/R/B/O	NT_023124	AC025181	32650409	2	chr5	NT_023124	AC025178	32491227	3	14926	0	0	14926
S/G/Y/R/B/O	NT_023124	AC091961	32691521	3	chr5	NT_023124	AC008949	32760312	3	16031	0	0	16031
S/G/Y/R/B/O	NT_023124	AC008949	32760312	3	chr5	NT_023124	AC034240	32907894	3	43954	0	0	43954
S/G/Y/R/B/O	NT_023124	AC034240	32907894	3	chr5	NT_023124	AC074134	32985114	3	76493	0	0	76493
S/G/Y/R/B/O	NT_023124	AC034240	32907894	3			AC017039	32760312		21131	0	2458	23589
S/G/Y/R/B/O	NT_023124	AC074134	32985114	3	chr5	NT_023124	AC008766	33058888	3	10567	0	0	10567
S/G/Y/R/B/O	NT_023124	AC074134	32985114	3			AC017039	33058888		31844	4709	7665	44218
S/G/Y/R/B/O	NT_023124	AC074134	32985114	3			AC021128	33058888		35255	3676	19266	58197
S/G/Y/R/B/O	NT_023124	AC008766	33058888	3	chr5	NT_023124	AC026703	33195846	3	26039	0	0	26039
S/G/Y/R/B/O	NT_023124	AC008766	33058888	3			AC021128	32907894		42016	4376	15609	62001
S/G/Y/R/B/O	NT_023124	AC008766	33058888	3			AC026751	33195846		42438	0	0	42438
S/G/Y/R/B/O	NT_023124	AC026703	33195846	3	chr5	NT_023124	AC025459	33301956	3	9057	0	0	9057
S/G/Y/R/B/O	NT_023124	AC026703	33195846	3			AC021128	33058888		11393	1695	0	13088
S/G/Y/R/B/O	NT_023124	AC026703	33195846	3			AC026751	33301956		83655	0	47538	131193
S/G/Y/R/B/O	NT_023124	AC025459	33301956	3	chr5	NT_023124	AC034223	33415295	3	35957	0	0	35957
S/G/Y/R/B/O	NT_023124	AC034223	33415295	3	chr5	NT_023124	AC010343	33482243	3	0	0	0	0
S/G/Y/R/B/O	NT_023124	AC010343	33482243	3	chr5	NT_023124	AC022443	33608990	3	105327	0	0	105327
S/G/Y/R/B/O	NT_023124	AC022443	33608990	3	chr5	NT_023124	AC093244	33628556	3	18913	0	0	18913
S/G/Y/R/B/O	NT_023124	AC093244	33628556	3	chr5	NT_023124	AC025472	33691188	3	4345	0	0	4345
S/G/Y/R/B/O	NT_023124	AC093244	33628556	3			AC114299	33691188		79895	0	0	79895
S/G/Y/R/B/O	NT_023124	AC025472	33691188	3	chr5	NT_023124	AC034231	33862932	3	4774	0	0	4774
S/G/Y/R/B/O	NT_023124	AC025472	33691188	3			AC011650	33691188		87431	2475	38233	128139
S/G/Y/R/B/O	NT_023124	AC025472	33691188	3			AC019273	33691188		62685	0	41524	104209
S/G/Y/R/B/O	NT_023124	AC025472	33691188	3			AC092282	33862932		59904	0	0	59904
S/G/Y/R/B/O	NT_023124	AC025472	33691188	3			AC108119	33628556		52448	0	0	52448
S/G/Y/R/B/O	NT_023124	AC034231	33862932	3	chr5	NT_023124	AC025441	33892283	3	21972	0	0	21972
S/G/Y/R/B/O	NT_023124	AC034231	33862932	3			AC012632	33628556		15118	1287	0	16405
S/G/Y/R/B/O	NT_023124	AC034231	33862932	3			AC108119	33691188		34063	0	0	34063
S/G/Y/R/B/O	NT_023124	AC025441	33892283	3	chr5	NT_023124	AC034232	33927063	3	6620	0	0	6620
S/G/Y/R/B/O	NT_023124	AC025441	33892283	3			AC012632	33691188		38591	0	0	38591
S/G/Y/R/B/O	NT_023124	AC025441	33892283	3			AC026710	33691188		26527	0	10895	37422
S/G/Y/R/B/O	NT_023124	AC025441	33892283	3			AC108119	33927063		56550	0	0	56550
S/G/Y/R/B/O	NT_023124	AC025441	33892283	3			AC109493	33927063		32568	0	0	32568
S/G/Y/R/B/O	NT_023124	AC034232	33927063	3
S/G/Y/R/B/O	NT_023124	AC034232	33927063	3			AC008899	33927063		59718	0	31232	90950
S/G/Y/R/B/O	NT_023124	AC034232	33927063	3			AC026710	33892283		71959	0	9885	81844
S/G/Y/R/B/O	NT_023124	AC034232	33927063	3			AC092283	33892283		101423	0	6628	108051
S/G/Y/R/B/O	NT_023124	AC034232	33927063	3			AC108119	33892283		58208	0	0	58208
S/G/Y/R/B/O	NT_023124	AC034232	33927063	3			AC109493	34039238		101289	0	6597	107886