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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_023084 | AC113415 | 17820266 | 1 | chr5 | NT_023084 | AC126751 | 17915411 | 3 | 36471 | 0 | 0 | 36471 |
S/G/Y/R/B/O |
NT_023084 | AC113415 | 17820266 | 1 | chr5 | NT_006576 | AC106774 | 17658248 | 1 | 17936 | 5360 | 39092 | 62388 |
S/G/Y/R/B/O |
NT_023084 | AC113415 | 17820266 | 1 |   |   | AC037436 | 17820266 | | 24379 | 8630 | 13640 | 46649 |
S/G/Y/R/B/O |
NT_023084 | AC113415 | 17820266 | 1 |   |   | AC041048 | 17820266 | | 11002 | 9367 | 63219 | 83588 |
S/G/Y/R/B/O |
NT_023084 | AC113415 | 17820266 | 1 |   |   | AC068100 | 17820266 | | 107099 | 52543 | 76489 | 236131 |
S/G/Y/R/B/O |
NT_023084 | AC126751 | 17915411 | 3 | chr5 | NT_023084 | AC113402 | 18036069 | 3 | 80824 | 0 | 0 | 80824 |
S/G/Y/R/B/O |
NT_023084 | AC126751 | 17915411 | 3 |   |   | AC015906 | 17915411 | | 21752 | 0 | 0 | 21752 |
S/G/Y/R/B/O |
NT_023084 | AC126751 | 17915411 | 3 |   |   | AC037436 | 17915411 | | 34693 | 2359 | 9093 | 46145 |
S/G/Y/R/B/O |
NT_023084 | AC113402 | 18036069 | 3 | chr5 | NT_023084 | AC113408 | 18045275 | 3 | 8720 | 0 | 0 | 8720 |
S/G/Y/R/B/O |
NT_023084 | AC113402 | 18036069 | 3 |   |   | AC015906 | 17820266 | | 31066 | 0 | 0 | 31066 |
S/G/Y/R/B/O |
NT_023084 | AC113402 | 18036069 | 3 |   |   | AC037436 | 17820266 | | 19613 | 0 | 1234 | 20847 |
S/G/Y/R/B/O |
NT_023084 | AC113408 | 18045275 | 3 | chr5 | NT_023084 | AC034247 | 18208516 | 3 | 35269 | 0 | 0 | 35269 |
S/G/Y/R/B/O |
NT_023084 | AC113408 | 18045275 | 3 |   |   | AC015906 | 17915411 | | 69851 | 2458 | 6747 | 79056 |
S/G/Y/R/B/O |
NT_023084 | AC113408 | 18045275 | 3 |   |   | AC055121 | 18208516 | | 49891 | 4881 | 36712 | 91484 |
S/G/Y/R/B/O |
NT_023084 | AC034247 | 18208516 | 3 | chr5 | NT_023084 | AC018763 | 18344688 | 3 | 7449 | 0 | 0 | 7449 |
S/G/Y/R/B/O |
NT_023084 | AC034247 | 18208516 | 3 |   |   | AC010438 | 18036069 | | 22779 | 0 | 16188 | 38967 |
S/G/Y/R/B/O |
NT_023084 | AC034247 | 18208516 | 3 |   |   | AC026753 | 18344688 | | 141513 | 0 | 0 | 141513 |
S/G/Y/R/B/O |
NT_023084 | AC018763 | 18344688 | 3 | chr5 | NT_023084 | AC091857 | 18457191 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_023084 | AC018763 | 18344688 | 3 |   |   | AC010438 | 18045275 | | 12349 | 2042 | 0 | 14391 |
S/G/Y/R/B/O |
NT_023084 | AC018763 | 18344688 | 3 |   |   | AC026753 | 18045275 | | 14284 | 0 | 0 | 14284 |
S/G/Y/R/B/O |
NT_023084 | AC018763 | 18344688 | 3 |   |   | AC027149 | 18045275 | | 15066 | 1903 | 28306 | 45275 |
S/G/Y/R/B/O |
NT_023084 | AC091857 | 18457191 | 3 | chr5 | NT_023084 | AC091911 | 18559042 | 3 | 63019 | 0 | 0 | 63019 |
S/G/Y/R/B/O |
NT_023084 | AC091857 | 18457191 | 3 |   |   | AC026430 | 18208516 | | 44530 | 0 | 0 | 44530 |
S/G/Y/R/B/O |
NT_023084 | AC091857 | 18457191 | 3 |   |   | AC027149 | 18208516 | | 52133 | 10874 | 13966 | 76973 |
S/G/Y/R/B/O |
NT_023084 | AC091911 | 18559042 | 3 | chr5 | NT_023084 | AC113389 | 18663434 | 3 | 31862 | 0 | 0 | 31862 |
S/G/Y/R/B/O |
NT_023084 | AC091911 | 18559042 | 3 |   |   | AC026430 | 18559042 | | 86742 | 0 | 0 | 86742 |
S/G/Y/R/B/O |
NT_023084 | AC091911 | 18559042 | 3 |   |   | AC027149 | 18559042 | | 32129 | 8625 | 1418 | 42172 |
S/G/Y/R/B/O |
NT_023084 | AC091911 | 18559042 | 3 |   |   | AC073832 | 18559042 | | 26720 | 3235 | 37530 | 67485 |
S/G/Y/R/B/O |
NT_023084 | AC113389 | 18663434 | 3 | chr5 | NT_023084 | AC114933 | 18802278 | 3 | 6629 | 0 | 0 | 6629 |
S/G/Y/R/B/O |
NT_023084 | AC113389 | 18663434 | 3 |   |   | AC073832 | 18663434 | | 69668 | 2312 | 15070 | 87050 |
S/G/Y/R/B/O |
NT_023084 | AC113389 | 18663434 | 3 |   |   | AC092382 | 18559042 | | 16239 | 5038 | 53480 | 74757 |
S/G/Y/R/B/O |
NT_023084 | AC114933 | 18802278 | 3 | chr5 | NT_023084 | AC026722 | 18973601 | 3 | 54198 | 0 | 0 | 54198 |
S/G/Y/R/B/O |
NT_023084 | AC114933 | 18802278 | 3 |   |   | AC025742 | 18802278 | | 90730 | 4779 | 14961 | 110470 |
S/G/Y/R/B/O |
NT_023084 | AC114933 | 18802278 | 3 |   |   | AC091865 | 18973601 | | 15097 | 0 | 0 | 15097 |
S/G/Y/R/B/O |
NT_023084 | AC114933 | 18802278 | 3 |   |   | AC092382 | 18973601 | | 13109 | 5784 | 5148 | 24041 |
S/G/Y/R/B/O |
NT_023084 | AC026722 | 18973601 | 3 | chr5 | NT_023084 | AC025768 | 19069516 | 3 | 19122 | 0 | 0 | 19122 |
S/G/Y/R/B/O |
NT_023084 | AC026722 | 18973601 | 3 |   |   | AC025742 | 18663434 | | 29842 | 0 | 0 | 29842 |
S/G/Y/R/B/O |
NT_023084 | AC026722 | 18973601 | 3 |   |   | AC091865 | 19069516 | | 87184 | 0 | 0 | 87184 |
S/G/Y/R/B/O |
NT_023084 | AC025768 | 19069516 | 3 | chr5 | NT_023084 | AC114981 | 19129569 | 3 | 57255 | 0 | 0 | 57255 |
S/G/Y/R/B/O |
NT_023084 | AC114981 | 19129569 | 3 | chr5 | NT_023084 | AC106744 | 19198177 | 3 | 0 | 0 | 21339 | 21339 |
S/G/Y/R/B/O |
NT_023084 | AC106744 | 19198177 | 3 | chr5 | NT_023084 | AC106768 | 19307961 | 3 | 0 | 0 | 65843 | 65843 |
S/G/Y/R/B/O |
NT_023084 | AC106768 | 19307961 | 3 | chr5 | NT_023084 | AC106803 | 19436055 | 2 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_023084 | AC106768 | 19307961 | 3 |   |   | AC112168 | 19198177 | | 58738 | 0 | 0 | 58738 |
S/G/Y/R/B/O |
NT_023084 | AC106803 | 19436055 | 2 | chr5 | NT_023084 | AC108101 | 19552954 | 3 | 35357 | 0 | 0 | 35357 |
S/G/Y/R/B/O |
NT_023084 | AC106803 | 19436055 | 2 |   |   | AC053488 | 19198177 | | 35159 | 0 | 0 | 35159 |
S/G/Y/R/B/O |
NT_023084 | AC106803 | 19436055 | 2 |   |   | AC092280 | 19198177 | | 30914 | 0 | 0 | 30914 |
S/G/Y/R/B/O |
NT_023084 | AC106803 | 19436055 | 2 |   |   | AC112168 | 19552954 | | 16788 | 0 | 93016 | 109804 |
S/G/Y/R/B/O |
NT_023084 | AC108101 | 19552954 | 3 | chr5 | NT_023084 | AC025173 | 19697795 | 3 | 37791 | 0 | 0 | 37791 |
S/G/Y/R/B/O |
NT_023084 | AC108101 | 19552954 | 3 |   |   | AC023884 | 19552954 | | 25944 | 0 | 0 | 25944 |
S/G/Y/R/B/O |
NT_023084 | AC108101 | 19552954 | 3 |   |   | AC053488 | 19697795 | | 67273 | 4539 | 63589 | 135401 |
S/G/Y/R/B/O |
NT_023084 | AC108101 | 19552954 | 3 |   |   | AC112168 | 19436055 | | 12721 | 0 | 0 | 12721 |
S/G/Y/R/B/O |
NT_023084 | AC025173 | 19697795 | 3 | chr5 | NT_023084 | AC113397 | 19800833 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_023084 | AC025173 | 19697795 | 3 |   |   | AC023884 | 19436055 | | 92017 | 2607 | 4365 | 98989 |
S/G/Y/R/B/O |
NT_023084 | AC025173 | 19697795 | 3 |   |   | AC053488 | 19436055 | | 34258 | 2887 | 274 | 37419 |
S/G/Y/R/B/O |
NT_023084 | AC113397 | 19800833 | 3 | chr5 | NT_023084 | AC118463 | 19956098 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_023084 | AC113397 | 19800833 | 3 |   |   | AC016790 | 19552954 | | 45938 | 1551 | 48950 | 96439 |
S/G/Y/R/B/O |
NT_023084 | AC113397 | 19800833 | 3 |   |   | AC023884 | 19552954 | | 29652 | 0 | 0 | 29652 |
S/G/Y/R/B/O |
NT_023084 | AC113397 | 19800833 | 3 |   |   | AC068917 | 19552954 | | 51091 | 10916 | 29456 | 91463 |
S/G/Y/R/B/O |
NT_023084 | AC118463 | 19956098 | 3 | chr5 | NT_023084 | AC093221 | 20023476 | 3 | 2462 | 0 | 0 | 2462 |
S/G/Y/R/B/O |
NT_023084 | AC118463 | 19956098 | 3 |   |   | AC026024 | 19552954 | | 64173 | 5780 | 1361 | 71314 |
S/G/Y/R/B/O |
NT_023084 | AC118463 | 19956098 | 3 |   |   | AC068917 | 19552954 | | 21291 | 6443 | 11028 | 38762 |
S/G/Y/R/B/O |
NT_023084 | AC093221 | 20023476 | 3 | chr5 | NT_023084 | AC108128 | 20160843 | 3 | 22996 | 0 | 0 | 22996 |
S/G/Y/R/B/O |
NT_023084 | AC093221 | 20023476 | 3 |   |   | AC026024 | 70691883 | | 32280 | 5017 | 34996 | 72293 |
S/G/Y/R/B/O |
NT_023084 | AC093221 | 20023476 | 3 |   |   | AC034175 | 70691883 | | 28670 | 4955 | 49523 | 83148 |
S/G/Y/R/B/O |
NT_023084 | AC108128 | 20160843 | 3 | chr5 | NT_023084 | AC093303 | 20257189 | 3 | 17785 | 0 | 0 | 17785 |
S/G/Y/R/B/O |
NT_023084 | AC108128 | 20160843 | 3 |   |   | AC034175 | 19956098 | | 50217 | 11367 | 36637 | 98221 |
S/G/Y/R/B/O |
NT_023084 | AC093303 | 20257189 | 3 | chr5 | NT_023084 | AC113350 | 20402967 | 3 | 0 | 1945 | 0 | 1945 |
S/G/Y/R/B/O |
NT_023084 | AC093303 | 20257189 | 3 |   |   | AC012095 | 20257189 | | 44761 | 13052 | 23613 | 81426 |
S/G/Y/R/B/O |
NT_023084 | AC113350 | 20402967 | 3 | chr5 | NT_023084 | AC034168 | 20481238 | 1 | 5106 | 0 | 68710 | 73816 |
S/G/Y/R/B/O |
NT_023084 | AC034168 | 20481238 | 1 | chr5 | NT_023084 | AC094103 | 20481638 | 3 | 31719 | 0 | 1473 | 33192 |
S/G/Y/R/B/O |
NT_023084 | AC094103 | 20481638 | 3 | chr5 | NT_023084 | AC109474 | 20634187 | 3 | 14604 | 0 | 0 | 14604 |
S/G/Y/R/B/O |
NT_023084 | AC109474 | 20634187 | 3 | chr5 | NT_023084 | AC010490 | 20800233 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_023084 | AC109474 | 20634187 | 3 |   |   | AC034163 | 20402967 | | 73339 | 15102 | 19016 | 107457 |
S/G/Y/R/B/O |
NT_023084 | AC109474 | 20634187 | 3 |   |   | AC091433 | 20402967 | | 39970 | 2040 | 0 | 42010 |
S/G/Y/R/B/O |
NT_023084 | AC010490 | 20800233 | 3 | chr5 | NT_023084 | AC129064 | 20897377 | 3 | 0 | 0 | 9113 | 9113 |
S/G/Y/R/B/O |
NT_023084 | AC010490 | 20800233 | 3 |   |   | AC091433 | 20481638 | | 32167 | 2701 | 43181 | 78049 |
S/G/Y/R/B/O |
NT_023084 | AC129064 | 20897377 | 3 | chr5 | NT_023084 | AC124850 | 20912489 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_023084 | AC124850 | 20912489 | 3 | chr5 | NT_023084 | AC109475 | 21017485 | 3 | 40541 | 0 | 0 | 40541 |
S/G/Y/R/B/O |
NT_023084 | AC124850 | 20912489 | 3 |   |   | AC010637 | 20800233 | | 14455 | 0 | 33502 | 47957 |
S/G/Y/R/B/O |
NT_023084 | AC109475 | 21017485 | 3 | chr5 | NT_023084 | AC025443 | 21118761 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_023084 | AC109475 | 21017485 | 3 |   |   | AC010637 | 118091890 | | 14449 | 0 | 29056 | 43505 |
S/G/Y/R/B/O |
NT_023084 | AC109475 | 21017485 | 3 |   |   | AC122696 | 118091890 | | 48556 | 0 | 0 | 48556 |
S/G/Y/R/B/O |
NT_023084 | AC025443 | 21118761 | 3 | chr5 | NT_023084 | AC091910 | 21190673 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_023084 | AC025443 | 21118761 | 3 |   |   | AC122696 | 35293571 | | 44311 | 0 | 0 | 44311 |
S/G/Y/R/B/O |
NT_023084 | AC091910 | 21190673 | 3 | chr5 | NT_023084 | AC026730 | 21338870 | 3 | 31416 | 0 | 0 | 31416 |
S/G/Y/R/B/O |
NT_023084 | AC091910 | 21190673 | 3 |   |   | AC026295 | 35293571 | | 65311 | 0 | 36640 | 101951 |
S/G/Y/R/B/O |
NT_023084 | AC026730 | 21338870 | 3 | chr5 | NT_023084 | AC093274 | 21441491 | 3 | 16834 | 0 | 0 | 16834 |
S/G/Y/R/B/O |
NT_023084 | AC026730 | 21338870 | 3 |   |   | AC026295 | 21338870 | | 12609 | 0 | 10392 | 23001 |
S/G/Y/R/B/O |
NT_023084 | AC026730 | 21338870 | 3 |   |   | AC027339 | 21338870 | | 58689 | 0 | 0 | 58689 |
S/G/Y/R/B/O |
NT_023084 | AC093274 | 21441491 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_023084 | AC093274 | 21441491 | 3 |   |   | AC024736 | 21441491 | | 96410 | 0 | 0 | 96410 |
S/G/Y/R/B/O |
NT_023084 | AC093274 | 21441491 | 3 |   |   | AC027339 | 21338870 | | 35290 | 0 | 0 | 35290 |
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