Chromosome 5 - Clone Overlaps

Chromosome 5 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034766	NT_037650	NT_037651	NT_023089	NT_006576	NT_023084	NT_037652	NT_037653
NT_006547	NT_023124	NT_023085	NT_034819	NT_006679	NT_023195	NT_034769	NT_023098
NT_037654	NT_023102	NT_037655	NT_037656	NT_037657	NT_033088	NT_023081	NT_006431
NT_037658	NT_037659	NT_006713	NT_030680	NT_037660	NT_029973	NT_023148	NT_006654
NT_037661	NT_034772	NT_006899	NT_030685	NT_025702	NT_016755	NT_007072	NT_034775
NT_034776	NT_037662	NT_037663	NT_037664	NT_016714	NT_029289	NT_006859	NT_034779
NT_006788	NT_030698	NT_023133	NT_037665	NT_023132	NT_037666	NT_034860	NT_037667
NT_006519	NT_037668

NT_025702

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_025702	AC114279	118184983	3	chr5	NT_025702	AC114311	118294901	3	13582	0	0	13582
S/G/Y/R/B/O	NT_025702	AC114311	118294901	3	chr5	NT_025702	AC093206	118377443	3	0	0	0	0
S/G/Y/R/B/O	NT_025702	AC114311	118294901	3			AC010802	118294901		55312	0	0	55312
S/G/Y/R/B/O	NT_025702	AC093206	118377443	3	chr5	NT_025702	AC010462	118534745	3	8197	0	0	8197
S/G/Y/R/B/O	NT_025702	AC093206	118377443	3			AC008444	118184983		91168	0	0	91168
S/G/Y/R/B/O	NT_025702	AC093206	118377443	3			AC010802	118534745		43423	0	0	43423
S/G/Y/R/B/O	NT_025702	AC093206	118377443	3			AC044796	118534745		49061	0	0	49061
S/G/Y/R/B/O	NT_025702	AC093206	118377443	3			AC093242	118534745		51019	6078	16336	73433
S/G/Y/R/B/O	NT_025702	AC010462	118534745	3	chr5	NT_025702	AC008629	118663048	3	0	0	0	0
S/G/Y/R/B/O	NT_025702	AC010462	118534745	3			AC017044	118534745		21166	0	0	21166
S/G/Y/R/B/O	NT_025702	AC010462	118534745	3			AC044796	118534745		76697	0	685	77382
S/G/Y/R/B/O	NT_025702	AC008629	118663048	3	chr5	NT_025702	AC118465	118795898	3	3353	0	0	3353
S/G/Y/R/B/O	NT_025702	AC008629	118663048	3			AC017044	118377443		28758	0	7065	35823
S/G/Y/R/B/O	NT_025702	AC118465	118795898	3	chr5	NT_025702	AC027320	118945716	3	24207	0	0	24207
S/G/Y/R/B/O	NT_025702	AC118465	118795898	3			AC017044	118663048		16366	2893	0	19259
S/G/Y/R/B/O	NT_025702	AC027320	118945716	3	chr5	NT_025702	AC008475	119061844	3	54175	0	0	54175
S/G/Y/R/B/O	NT_025702	AC008475	119061844	3	chr5	NT_025702	AC035144	119084636	3	22778	0	0	22778
S/G/Y/R/B/O	NT_025702	AC035144	119084636	3	chr5	NT_025702	AC024564	119172196	3	0	0	0	0
S/G/Y/R/B/O	NT_025702	AC024564	119172196	3	chr5	NT_025702	AC010409	119326478	3	0	0	46882	46882
S/G/Y/R/B/O	NT_025702	AC024564	119172196	3			AC068029	119326478		41129	1571	26705	69405
S/G/Y/R/B/O	NT_025702	AC010409	119326478	3	chr5	NT_025702	AC008550	119396734	3	0	0	0	0
S/G/Y/R/B/O	NT_025702	AC010409	119326478	3			AC010293	119326478		29756	0	0	29756
S/G/Y/R/B/O	NT_025702	AC010409	119326478	3			AC018857	119326478		82173	2733	3022	87928
S/G/Y/R/B/O	NT_025702	AC010409	119326478	3			AC068029	119172196		26319	1572	0	27891
S/G/Y/R/B/O	NT_025702	AC008550	119396734	3	chr5	NT_025702	AC010348	119507305	3	0	0	0	0
S/G/Y/R/B/O	NT_025702	AC008550	119396734	3			AC008419	119172196		19989	8020	4864	32873
S/G/Y/R/B/O	NT_025702	AC008550	119396734	3			AC008520	119172196		11290	4346	9093	24729
S/G/Y/R/B/O	NT_025702	AC008550	119396734	3			AC018857	119172196		61711	2734	6888	71333
S/G/Y/R/B/O	NT_025702	AC010348	119507305	3	chr5	NT_025702	AC093272	119585912	3	25303	0	0	25303
S/G/Y/R/B/O	NT_025702	AC010348	119507305	3			AC008419	119172196		19968	8016	4820	32804
S/G/Y/R/B/O	NT_025702	AC010348	119507305	3			AC008520	119172196		11328	1606	11030	23964
S/G/Y/R/B/O	NT_025702	AC010348	119507305	3			AC018857	119172196		31890	0	3544	35434
S/G/Y/R/B/O	NT_025702	AC093272	119585912	3	chr5	NT_025702	AC109447	119602348	3	7927	0	0	7927
S/G/Y/R/B/O	NT_025702	AC109447	119602348	3	chr5	NT_025702	AC024566	119766959	3	56136	0	0	56136
S/G/Y/R/B/O	NT_025702	AC109447	119602348	3			AC016072	119602348		12325	0	1276	13601
S/G/Y/R/B/O	NT_025702	AC024566	119766959	3	chr5	NT_025702	AC108095	119856766	3	30990	0	0	30990
S/G/Y/R/B/O	NT_025702	AC024566	119766959	3			AC010360	119585912		43327	10859	9666	63852
S/G/Y/R/B/O	NT_025702	AC024566	119766959	3			AC016072	119585912		57932	0	1276	59208
S/G/Y/R/B/O	NT_025702	AC108095	119856766	3	chr5	NT_025702	AC008574	119974869	3	2419	0	0	2419
S/G/Y/R/B/O	NT_025702	AC108095	119856766	3			AC008553	119602348		69039	0	0	69039
S/G/Y/R/B/O	NT_025702	AC108095	119856766	3			AC010360	119974869		36340	9977	0	46317
S/G/Y/R/B/O	NT_025702	AC108095	119856766	3			AC016072	119974869		35703	0	0	35703
S/G/Y/R/B/O	NT_025702	AC008574	119974869	3	chr5	NT_025702	AC114309	120008811	3	0	0	0	0
S/G/Y/R/B/O	NT_025702	AC008574	119974869	3			AC008553	174644482		24436	0	0	24436
S/G/Y/R/B/O	NT_025702	AC114309	120008811	3	chr5	NT_025702	AC109463	120020491	3	11049	0	0	11049
S/G/Y/R/B/O	NT_025702	AC114309	120008811	3			AC113421	120020491		41102	0	0	41102
S/G/Y/R/B/O	NT_025702	AC109463	120020491	3	chr5	NT_025702	AC113418	120044427	3	12877	0	0	12877
S/G/Y/R/B/O	NT_025702	AC109463	120020491	3			AC018947	120020491		10045	2659	0	12704
S/G/Y/R/B/O	NT_025702	AC113418	120044427	3	chr5	NT_025702	AC104110	120214276	3	64804	0	0	64804
S/G/Y/R/B/O	NT_025702	AC113418	120044427	3			AC011280	120008811		163396	0	0	163396
S/G/Y/R/B/O	NT_025702	AC113418	120044427	3			AC018947	120008811		124783	3315	48593	176691
S/G/Y/R/B/O	NT_025702	AC113418	120044427	3			AC027099	120008811		40919	8960	3775	53654
S/G/Y/R/B/O	NT_025702	AC113418	120044427	3			AC113421	120020491		10441	0	1248	11689
S/G/Y/R/B/O	NT_025702	AC104110	120214276	3	chr5	NT_025702	AC073165	120315077	3	0	0	0	0
S/G/Y/R/B/O	NT_025702	AC104110	120214276	3			AC011280	120020491		49461	0	3559	53020
S/G/Y/R/B/O	NT_025702	AC104110	120214276	3			AC018947	120020491		41930	1430	21620	64980
S/G/Y/R/B/O	NT_025702	AC104110	120214276	3			AC019277	120020491		20026	5140	0	25166
S/G/Y/R/B/O	NT_025702	AC104110	120214276	3			AC027099	120020491		45964	13271	21616	80851
S/G/Y/R/B/O	NT_025702	AC073165	120315077	3	chr5	NT_025702	AC093301	120367138	3	0	0	0	0
S/G/Y/R/B/O	NT_025702	AC073165	120315077	3			AC019277	120044427		113306	5164	0	118470
S/G/Y/R/B/O	NT_025702	AC073165	120315077	3			AC027099	120044427		30893	4313	17841	53047
S/G/Y/R/B/O	NT_025702	AC093301	120367138	3	chr5	NT_025702	AC114274	120504975	3	16418	0	0	16418
S/G/Y/R/B/O	NT_025702	AC093301	120367138	3			AC017105	120044427		68254	4668	28412	101334
S/G/Y/R/B/O	NT_025702	AC093301	120367138	3			AC019277	120044427		34283	0	0	34283
S/G/Y/R/B/O	NT_025702	AC114274	120504975	3	chr5	NT_025702	AC114284	120508948	3	10165	0	0	10165
S/G/Y/R/B/O	NT_025702	AC114284	120508948	3	chr5	NT_025702	AC093253	120635428	3	42253	0	0	42253
S/G/Y/R/B/O	NT_025702	AC093253	120635428	3	chr5	NT_025702	AC008565	120675292	3	24842	0	0	24842
S/G/Y/R/B/O	NT_025702	AC008565	120675292	3	chr5	NT_025702	AC113352	120817512	3	0	0	0	0
S/G/Y/R/B/O	NT_025702	AC113352	120817512	3	chr5	NT_025702	AC010350	120924694	3	15431	0	0	15431
S/G/Y/R/B/O	NT_025702	AC113352	120817512	3			AC108098	120924694		61610	1990	0	63600
S/G/Y/R/B/O	NT_025702	AC010350	120924694	3	chr5	NT_025702	AC008568	121001986	3	15549	0	0	15549
S/G/Y/R/B/O	NT_025702	AC010350	120924694	3			AC008876	121001986		15549	0	0	15549
S/G/Y/R/B/O	NT_025702	AC010350	120924694	3			AC108098	121001986		14234	2495	13328	30057
S/G/Y/R/B/O	NT_025702	AC008568	121001986	3	chr5	NT_025702	AC010482	121125736	3	45257	0	0	45257
S/G/Y/R/B/O	NT_025702	AC008568	121001986	3			AC008487	120817512		35187	11355	24259	70801
S/G/Y/R/B/O	NT_025702	AC008568	121001986	3			AC008876	120817512		152704	0	0	152704
S/G/Y/R/B/O	NT_025702	AC010482	121125736	3	chr5	NT_025702	AC106806	121296909	3	0	0	0	0
S/G/Y/R/B/O	NT_025702	AC010482	121125736	3			AC008487	121125736		12433	6021	12505	30959
S/G/Y/R/B/O	NT_025702	AC010482	121125736	3			AC008876	121001986		45262	0	0	45262
S/G/Y/R/B/O	NT_025702	AC106806	121296909	3	chr5	NT_025702	AC034219	121438553	3	77695	0	0	77695
S/G/Y/R/B/O	NT_025702	AC034219	121438553	3	chr5	NT_025702	AC117523	121481112	3	0	1966	0	1966
S/G/Y/R/B/O	NT_025702	AC034219	121438553	3			AC011181	178058838		41760	519	0	42279
S/G/Y/R/B/O	NT_025702	AC034219	121438553	3			AC094096	178058838		40341	0	0	40341
S/G/Y/R/B/O	NT_025702	AC117523	121481112	3	chr5	NT_025702	AC093521	121604103	3	7298	0	0	7298
S/G/Y/R/B/O	NT_025702	AC117523	121481112	3			AC011181	121481112		80875	2990	0	83865
S/G/Y/R/B/O	NT_025702	AC117523	121481112	3			AC094096	121604103		117546	0	0	117546
S/G/Y/R/B/O	NT_025702	AC093521	121604103	3	chr5	NT_025702	AC010255	121740761	3	0	0	0	0
S/G/Y/R/B/O	NT_025702	AC093521	121604103	3			AC093242	121604103		13855	5448	15422	34725
S/G/Y/R/B/O	NT_025702	AC010255	121740761	3	chr5	NT_025702	AC113349	121930036	3	31314	0	0	31314
S/G/Y/R/B/O	NT_025702	AC010255	121740761	3			AC008436	121481112		11730	0	0	11730
S/G/Y/R/B/O	NT_025702	AC010255	121740761	3			AC010611	121481112		28497	2237	2669	33403
S/G/Y/R/B/O	NT_025702	AC010255	121740761	3			AC090062	121481112		92955	0	0	92955
S/G/Y/R/B/O	NT_025702	AC113349	121930036	3
S/G/Y/R/B/O	NT_025702	AC113349	121930036	3			AC008436	121930036		118522	0	0	118522