Chromosome 5 - Clone Overlaps

Chromosome 5 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034766	NT_037650	NT_037651	NT_023089	NT_006576	NT_023084	NT_037652	NT_037653
NT_006547	NT_023124	NT_023085	NT_034819	NT_006679	NT_023195	NT_034769	NT_023098
NT_037654	NT_023102	NT_037655	NT_037656	NT_037657	NT_033088	NT_023081	NT_006431
NT_037658	NT_037659	NT_006713	NT_030680	NT_037660	NT_029973	NT_023148	NT_006654
NT_037661	NT_034772	NT_006899	NT_030685	NT_025702	NT_016755	NT_007072	NT_034775
NT_034776	NT_037662	NT_037663	NT_037664	NT_016714	NT_029289	NT_006859	NT_034779
NT_006788	NT_030698	NT_023133	NT_037665	NT_023132	NT_037666	NT_034860	NT_037667
NT_006519	NT_037668

NT_023132

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_023132	AC011365	168772826	2	chr5	NT_023132	AC027311	168896426	3	28078	0	0	28078
S/G/Y/R/B/O	NT_023132	AC011365	168772826	2	chr5	NT_037665	AC008590	168679012	3	53574	0	0	53574
S/G/Y/R/B/O	NT_023132	AC011365	168772826	2			AC021468	168679012		48457	2939	2566	53962
S/G/Y/R/B/O	NT_023132	AC027311	168896426	3	chr5	NT_023132	AC094081	169015489	3	68835	0	0	68835
S/G/Y/R/B/O	NT_023132	AC094081	169015489	3	chr5	NT_023132	AC011389	169098742	3	65887	0	0	65887
S/G/Y/R/B/O	NT_023132	AC011389	169098742	3	chr5	NT_023132	AC008409	169262113	3	2466	0	0	2466
S/G/Y/R/B/O	NT_023132	AC011389	169098742	3			AC046182	169262113		72579	2003	4830	79412
S/G/Y/R/B/O	NT_023132	AC011389	169098742	3			AC046182	169262113		72579	2003	4830	79412
S/G/Y/R/B/O	NT_023132	AC008409	169262113	3	chr5	NT_023132	AC112165	169388629	3	10545	0	0	10545
S/G/Y/R/B/O	NT_023132	AC008409	169262113	3			AC046182	169098742		56760	683	13899	71342
S/G/Y/R/B/O	NT_023132	AC112165	169388629	3	chr5	NT_023132	AC008479	169491197	3	90975	0	0	90975
S/G/Y/R/B/O	NT_023132	AC008479	169491197	3	chr5	NT_023132	AC008665	169576589	3	0	0	0	0
S/G/Y/R/B/O	NT_023132	AC008665	169576589	3	chr5	NT_023132	AC008680	169693062	3	13793	0	0	13793
S/G/Y/R/B/O	NT_023132	AC008665	169576589	3			AC010218	169693062		67417	0	0	67417
S/G/Y/R/B/O	NT_023132	AC008680	169693062	3	chr5	NT_023132	AC010303	169908314	3	9472	0	0	9472
S/G/Y/R/B/O	NT_023132	AC008680	169693062	3			AC010218	169576589		43516	0	0	43516
S/G/Y/R/B/O	NT_023132	AC008680	169693062	3			AC023084	169908314		79253	0	26052	105305
S/G/Y/R/B/O	NT_023132	AC010303	169908314	3	chr5	NT_023132	AC008449	169985371	3	50432	0	0	50432
S/G/Y/R/B/O	NT_023132	AC010303	169908314	3			AC022927	169693062		52730	3201	8099	64030
S/G/Y/R/B/O	NT_023132	AC008449	169985371	3	chr5	NT_023132	AC008648	170059287	3	15064	0	0	15064
S/G/Y/R/B/O	NT_023132	AC008449	169985371	3			AC022927	169908314		103909	2016	6822	112747
S/G/Y/R/B/O	NT_023132	AC008648	170059287	3	chr5	NT_023132	AC026695	170156436	3	6068	0	0	6068
S/G/Y/R/B/O	NT_023132	AC008648	170059287	3			AC022927	169985371		16118	4983	0	21101
S/G/Y/R/B/O	NT_023132	AC026695	170156436	3	chr5	NT_023132	AC008660	170239466	3	5344	0	0	5344
S/G/Y/R/B/O	NT_023132	AC008660	170239466	3	chr5	NT_023132	AC034199	170369054	3	0	0	0	0
S/G/Y/R/B/O	NT_023132	AC034199	170369054	3	chr5	NT_023132	AC134820	170484273	3	8175	0	0	8175
S/G/Y/R/B/O	NT_023132	AC034199	170369054	3			AC027741	170156436		89681	5395	1152	96228
S/G/Y/R/B/O	NT_023132	AC134820	170484273	3	chr5	NT_023132	AC027306	170530789	3	46513	0	0	46513
S/G/Y/R/B/O	NT_023132	AC134820	170484273	3			AC027741	170530789		48316	0	185	48501
S/G/Y/R/B/O	NT_023132	AC027306	170530789	3	chr5	NT_023132	AC008619	170608774	3	3027	0	0	3027
S/G/Y/R/B/O	NT_023132	AC027306	170530789	3			AC027741	170608774		62895	1385	0	64280
S/G/Y/R/B/O	NT_023132	AC008619	170608774	3	chr5	NT_023132	AC113432	170696795	3	14276	0	0	14276
S/G/Y/R/B/O	NT_023132	AC113432	170696795	3	chr5	NT_023132	AC027312	170748095	3	28944	0	0	28944
S/G/Y/R/B/O	NT_023132	AC027312	170748095	3	chr5	NT_023132	AC008719	170845104	3	15048	0	0	15048
S/G/Y/R/B/O	NT_023132	AC008719	170845104	3	chr5	NT_023132	AC008514	170918730	3	38683	0	0	38683
S/G/Y/R/B/O	NT_023132	AC008514	170918730	3	chr5	NT_023132	AC018753	171051751	3	0	0	0	0
S/G/Y/R/B/O	NT_023132	AC018753	171051751	3	chr5	NT_023132	AC021077	171114794	3	0	0	0	0
S/G/Y/R/B/O	NT_023132	AC021077	171114794	3	chr5	NT_023132	AC016574	171267787	3	97233	0	0	97233
S/G/Y/R/B/O	NT_023132	AC016574	171267787	3	chr5	NT_023132	AC010306	171333377	3	41613	0	0	41613
S/G/Y/R/B/O	NT_023132	AC010306	171333377	3	chr5	NT_023132	AC091980	171402459	3	0	0	0	0
S/G/Y/R/B/O	NT_023132	AC010306	171333377	3			AC010454	171114794		33529	0	0	33529
S/G/Y/R/B/O	NT_023132	AC091980	171402459	3	chr5	NT_023132	AC093246	171532290	3	82747	0	0	82747
S/G/Y/R/B/O	NT_023132	AC093246	171532290	3	chr5	NT_023132	AC011400	171624621	3	40333	0	0	40333
S/G/Y/R/B/O	NT_023132	AC011400	171624621	3	chr5	NT_023132	AC022426	171744596	3	38475	0	0	38475
S/G/Y/R/B/O	NT_023132	AC011400	171624621	3			AC011358	171402459		25894	0	0	25894
S/G/Y/R/B/O	NT_023132	AC022426	171744596	3	chr5	NT_023132	AC022440	171816945	3	50558	0	0	50558
S/G/Y/R/B/O	NT_023132	AC022426	171744596	3			AC011358	171532290		98145	0	0	98145
S/G/Y/R/B/O	NT_023132	AC022440	171816945	3	chr5	NT_023132	AC011410	171884091	3	9136	0	0	9136
S/G/Y/R/B/O	NT_023132	AC022440	171816945	3			AC011358	171816945		117554	0	0	117554
S/G/Y/R/B/O	NT_023132	AC011410	171884091	3	chr5	NT_023132	AC011387	171994591	3	42137	0	0	42137
S/G/Y/R/B/O	NT_023132	AC011410	171884091	3			AC007427	171744596		61725	0	32416	94141
S/G/Y/R/B/O	NT_023132	AC011410	171884091	3			AC011358	171744596		44940	0	0	44940
S/G/Y/R/B/O	NT_023132	AC011387	171994591	3	chr5	NT_023132	AC113342	172116508	3	6090	0	0	6090
S/G/Y/R/B/O	NT_023132	AC011387	171994591	3			AC007427	171816945		107445	5816	5555	118816
S/G/Y/R/B/O	NT_023132	AC011387	171994591	3			AC116355	172116508		44920	0	0	44920
S/G/Y/R/B/O	NT_023132	AC113342	172116508	3	chr5	NT_023132	AC092271	172210548	3	0	0	0	0
S/G/Y/R/B/O	NT_023132	AC092271	172210548	3	chr5	NT_023132	AC024561	172250745	3	16432	0	0	16432
S/G/Y/R/B/O	NT_023132	AC024561	172250745	3	chr5	NT_023132	AC008671	172389337	2	66773	0	2048	68821
S/G/Y/R/B/O	NT_023132	AC008671	172389337	2	chr5	NT_023132	AC090064	172457716	3	10332	0	0	10332
S/G/Y/R/B/O	NT_023132	AC090064	172457716	3	chr5	NT_023132	AC011407	172497568	3	98585	0	0	98585
S/G/Y/R/B/O	NT_023132	AC011407	172497568	3	chr5	NT_023132	AC027309	172724576	3	41274	0	0	41274
S/G/Y/R/B/O	NT_023132	AC011407	172497568	3			AC034210	172724576		33519	0	4371	37890
S/G/Y/R/B/O	NT_023132	AC027309	172724576	3	chr5	NT_023132	AC022217	172872781	3	63785	0	0	63785
S/G/Y/R/B/O	NT_023132	AC027309	172724576	3			AC008654	172457716		19045	0	0	19045
S/G/Y/R/B/O	NT_023132	AC027309	172724576	3			AC034210	172872781		101076	2356	59940	163372
S/G/Y/R/B/O	NT_023132	AC022217	172872781	3	chr5	NT_023132	AC110011	173002830	3	63405	0	0	63405
S/G/Y/R/B/O	NT_023132	AC022217	172872781	3			AC008654	172872781		63626	0	0	63626
S/G/Y/R/B/O	NT_023132	AC022217	172872781	3			AC021159	172872781		27509	446	11003	38958
S/G/Y/R/B/O	NT_023132	AC022217	172872781	3			AC034210	172724576		26989	0	17354	44343
S/G/Y/R/B/O	NT_023132	AC110011	173002830	3	chr5	NT_023132	AC008429	173025286	3	10027	0	0	10027
S/G/Y/R/B/O	NT_023132	AC110011	173002830	3			AC021159	173025286		46547	0	16385	62932
S/G/Y/R/B/O	NT_023132	AC008429	173025286	3	chr5	NT_023132	AC008378	173163810	3	10860	0	0	10860
S/G/Y/R/B/O	NT_023132	AC008429	173025286	3			AC021159	173163810		31367	12991	64151	108509
S/G/Y/R/B/O	NT_023132	AC008429	173025286	3			AC021159	173163810		31367	12991	64151	108509
S/G/Y/R/B/O	NT_023132	AC008378	173163810	3	chr5	NT_023132	AC008412	173325077	3	4434	0	0	4434
S/G/Y/R/B/O	NT_023132	AC008378	173163810	3			AC010603	173025286		35879	0	1780	37659
S/G/Y/R/B/O	NT_023132	AC008378	173163810	3			AL669821	173025286		88966	0	0	88966
S/G/Y/R/B/O	NT_023132	AC008412	173325077	3	chr5	NT_023132	AC106731	173404521	2	0	0	0	0
S/G/Y/R/B/O	NT_023132	AC106731	173404521	2	chr5	NT_023132	AC016573	173473343	3	45791	0	0	45791
S/G/Y/R/B/O	NT_023132	AC106731	173404521	2			AC008713	173163810		99272	3030	875	103177
S/G/Y/R/B/O	NT_023132	AC106731	173404521	2			AL669924	173473343		69273	0	1082	70355
S/G/Y/R/B/O	NT_023132	AC016573	173473343	3	chr5	NT_023132	AC008632	173573851	3	0	0	0	0
S/G/Y/R/B/O	NT_023132	AC016573	173473343	3			AC008713	173473343		42639	3034	0	45673
S/G/Y/R/B/O	NT_023132	AC008632	173573851	3	chr5	NT_023132	AC008663	173680461	3	70160	0	0	70160
S/G/Y/R/B/O	NT_023132	AC008632	173573851	3			AC022259	173680461		60187	22715	5556	88458
S/G/Y/R/B/O	NT_023132	AC008663	173680461	3	chr5	NT_023132	AC010339	173753103	3	34132	0	0	34132
S/G/Y/R/B/O	NT_023132	AC008663	173680461	3			AC022259	173753103		79724	9630	20112	109466
S/G/Y/R/B/O	NT_023132	AC010339	173753103	3	chr5	NT_023132	AC008674	173841351	3	68364	0	0	68364
S/G/Y/R/B/O	NT_023132	AC010339	173753103	3			AC022259	173841351		14509	0	9426	23935
S/G/Y/R/B/O	NT_023132	AC008674	173841351	3	chr5	NT_023132	AC093275	173951429	3	11170	0	0	11170
S/G/Y/R/B/O	NT_023132	AC008674	173841351	3			AC010452	173753103		53214	0	11121	64335
S/G/Y/R/B/O	NT_023132	AC008674	173841351	3			AC017043	173753103		64730	0	5119	69849
S/G/Y/R/B/O	NT_023132	AC093275	173951429	3	chr5	NT_023132	AC113423	174111064	3	0	0	0	0
S/G/Y/R/B/O	NT_023132	AC093275	173951429	3			AC010452	173841351		29554	0	51285	80839
S/G/Y/R/B/O	NT_023132	AC093275	173951429	3			AC017043	173841351		91023	0	0	91023
S/G/Y/R/B/O	NT_023132	AC093275	173951429	3			AC023404	173841351		22051	0	0	22051
S/G/Y/R/B/O	NT_023132	AC093275	173951429	3			AC027609	173841351		89286	0	44879	134165
S/G/Y/R/B/O	NT_023132	AC113423	174111064	3	chr5	NT_023132	AC093310	174217246	3	36429	0	0	36429
S/G/Y/R/B/O	NT_023132	AC113423	174111064	3			AC008714	173841351		60428	5094	0	65522
S/G/Y/R/B/O	NT_023132	AC113423	174111064	3			AC023404	173841351		107658	0	0	107658
S/G/Y/R/B/O	NT_023132	AC113423	174111064	3			AC093222	173841351		31768	2669	21734	56171
S/G/Y/R/B/O	NT_023132	AC093310	174217246	3	chr5	NT_023132	AC011333	174244881	3	0	1775	0	1775
S/G/Y/R/B/O	NT_023132	AC093310	174217246	3			AC008714	174217246		65527	0	0	65527
S/G/Y/R/B/O	NT_023132	AC093310	174217246	3			AC023404	174244881		36339	0	0	36339
S/G/Y/R/B/O	NT_023132	AC093310	174217246	3			AC093222	174244881		38855	4116	17996	60967
S/G/Y/R/B/O	NT_023132	AC011333	174244881	3	chr5	NT_023132	AC025752	174404845	1	18711	0	0	18711
S/G/Y/R/B/O	NT_023132	AC011333	174244881	3			AC008714	174111064		23166	1781	23367	48314
S/G/Y/R/B/O	NT_023132	AC011333	174244881	3			AC093222	174404845		11806	0	1775	13581
S/G/Y/R/B/O	NT_023132	AC025752	174404845	1	chr5	NT_023132	AC008381	174474638	3	63581	0	0	63581
S/G/Y/R/B/O	NT_023132	AC025752	174404845	1			AC010257	174474638		36842	5532	37776	80150
S/G/Y/R/B/O	NT_023132	AC025752	174404845	1			AC091963	174244881		86492	2387	25195	114074
S/G/Y/R/B/O	NT_023132	AC008381	174474638	3	chr5	NT_023132	AC108104	174575941	3	28070	0	0	28070
S/G/Y/R/B/O	NT_023132	AC008381	174474638	3			AC010257	174244881		33867	1512	36892	72271
S/G/Y/R/B/O	NT_023132	AC008381	174474638	3			AC091963	174404845		100847	0	0	100847
S/G/Y/R/B/O	NT_023132	AC108104	174575941	3	chr5	NT_023132	AC108112	174644482	1	10803	0	0	10803
S/G/Y/R/B/O	NT_023132	AC108104	174575941	3			AC024472	174474638		14661	6892	277	21830
S/G/Y/R/B/O	NT_023132	AC108104	174575941	3			AC026552	174474638		29779	0	4647	34426
S/G/Y/R/B/O	NT_023132	AC108104	174575941	3			AC091963	174474638		29044	0	0	29044
S/G/Y/R/B/O	NT_023132	AC108112	174644482	1	chr5	NT_023132	AC117531	174819385	3	34468	0	0	34468
S/G/Y/R/B/O	NT_023132	AC108112	174644482	1			AC010257	174644482		15567	0	0	15567
S/G/Y/R/B/O	NT_023132	AC108112	174644482	1			AC024472	174644482		78898	6729	9823	95450
S/G/Y/R/B/O	NT_023132	AC108112	174644482	1			AC026552	119766959		83918	9154	9778	102850
S/G/Y/R/B/O	NT_023132	AC108112	174644482	1			AC031987	119766959		26881	2459	1137	30477
S/G/Y/R/B/O	NT_023132	AC117531	174819385	3	chr5	NT_023132	AC113346	174945237	1	78665	2163	2743	83571
S/G/Y/R/B/O	NT_023132	AC117531	174819385	3			AC031987	174819385		86102	10376	40837	137315
S/G/Y/R/B/O	NT_023132	AC113346	174945237	1	chr5	NT_023132	AC010220	175022758	3	0	0	0	0
S/G/Y/R/B/O	NT_023132	AC113346	174945237	1	chr5	NT_023132	AC008413	175052197	3	46088	0	0	46088
S/G/Y/R/B/O	NT_023132	AC113346	174945237	1			AC031987	175052197		39221	12057	30310	81588
S/G/Y/R/B/O	NT_023132	AC010220	175022758	3	chr5	NT_023132	AC008413	175052197	3	0	0	0	0
S/G/Y/R/B/O	NT_023132	AC008413	175052197	3	chr5	NT_023132	AC027316	175181064	3	69541	0	0	69541
S/G/Y/R/B/O	NT_023132	AC008413	175052197	3	chr5	NT_023132	AC113346	174945237	1	46088	0	0	46088
S/G/Y/R/B/O	NT_023132	AC027316	175181064	3	chr5	NT_023132	AC027310	175223884	3	11564	0	0	11564
S/G/Y/R/B/O	NT_023132	AC027310	175223884	3	chr5	NT_023132	AC008699	175280243	3	35000	0	0	35000
S/G/Y/R/B/O	NT_023132	AC008699	175280243	3	chr5	NT_023132	AC020903	175449592	3	0	0	0	0
S/G/Y/R/B/O	NT_023132	AC008699	175280243	3			AC090065	175223884		17545	0	44098	61643
S/G/Y/R/B/O	NT_023132	AC020903	175449592	3	chr5	NT_023132	AC091393	175499280	3	68599	0	0	68599
S/G/Y/R/B/O	NT_023132	AC020903	175449592	3			AC008399	175223884		45149	0	0	45149
S/G/Y/R/B/O	NT_023132	AC091393	175499280	3	chr5	NT_023132	AC034200	175721935	3	111371	0	0	111371
S/G/Y/R/B/O	NT_023132	AC091393	175499280	3	chr5	NT_023132	AC091957	175753463	1	17177	3900	41110	62187
S/G/Y/R/B/O	NT_023132	AC091393	175499280	3			AC008399	175499280		39909	2555	0	42464
S/G/Y/R/B/O	NT_023132	AC091393	175499280	3			AC025713	175449592		157426	0	26400	183826
S/G/Y/R/B/O	NT_023132	AC091393	175499280	3			AC026715	175449592		22683	0	13711	36394
S/G/Y/R/B/O	NT_023132	AC034200	175721935	3	chr5	NT_023132	AC091957	175753463	1	33829	2120	41151	77100
S/G/Y/R/B/O	NT_023132	AC034200	175721935	3			AC025713	175753463		98907	0	3100	102007
S/G/Y/R/B/O	NT_023132	AC034200	175721935	3			AC026715	175753463		41504	0	17007	58511
S/G/Y/R/B/O	NT_023132	AC091957	175753463	1	chr5	NT_023132	AC010219	175841123	3	18574	0	10635	29209
S/G/Y/R/B/O	NT_023132	AC091957	175753463	1	chr5	NT_023132	AC091393	175499280	3	17177	3900	41110	62187
S/G/Y/R/B/O	NT_023132	AC091957	175753463	1			AC025713	175841123		31408	4360	27592	63360
S/G/Y/R/B/O	NT_023132	AC091957	175753463	1			AC026715	175841123		34496	8377	25886	68759
S/G/Y/R/B/O	NT_023132	AC010219	175841123	3	chr5	NT_023132	AC018760	175969045	3	0	0	17101	17101
S/G/Y/R/B/O	NT_023132	AC010219	175841123	3			AC026715	175969045		20522	2228	2665	25415
S/G/Y/R/B/O	NT_023132	AC018760	175969045	3	chr5	NT_023132	AC010241	176037090	3	18968	0	0	18968
S/G/Y/R/B/O	NT_023132	AC010241	176037090	3	chr5	NT_023132	AC106825	176155118	3	35347	0	0	35347
S/G/Y/R/B/O	NT_023132	AC106825	176155118	3	chr5	NT_023132	AC008454	176219072	3	0	0	0	0
S/G/Y/R/B/O	NT_023132	AC008454	176219072	3	chr5	NT_023132	AC108509	176303550	3	0	0	0	0
S/G/Y/R/B/O	NT_023132	AC108509	176303550	3	chr5	NT_023132	AC008469	176382794	3	17889	0	0	17889
S/G/Y/R/B/O	NT_023132	AC108509	176303550	3			AC120111	176382794		44839	2211	0	47050
S/G/Y/R/B/O	NT_023132	AC108509	176303550	3			AC124849	176382794		39670	0	25874	65544
S/G/Y/R/B/O	NT_023132	AC008469	176382794	3	chr5	NT_023132	AC116427	176469191	3	42331	0	0	42331
S/G/Y/R/B/O	NT_023132	AC008469	176382794	3			AC114280	176303550		83674	0	0	83674
S/G/Y/R/B/O	NT_023132	AC008469	176382794	3			AC120111	176469191		27727	0	3752	31479
S/G/Y/R/B/O	NT_023132	AC008469	176382794	3			AC124849	176469191		29531	0	1337	30868
S/G/Y/R/B/O	NT_023132	AC116427	176469191	3	chr5	NT_023132	AC010239	176530746	2	5073	0	0	5073
S/G/Y/R/B/O	NT_023132	AC116427	176469191	3			AC114280	176530746		21889	0	0	21889
S/G/Y/R/B/O	NT_023132	AC010239	176530746	2	chr5	NT_023132	AC010297	176581990	3	10899	0	0	10899
S/G/Y/R/B/O	NT_023132	AC010297	176581990	3	chr5	NT_023132	AC010316	176739570	3	17437	0	0	17437
S/G/Y/R/B/O	NT_023132	AC010316	176739570	3	chr5	NT_023132	AC091934	176795300	3	19138	0	0	19138
S/G/Y/R/B/O	NT_023132	AC010316	176739570	3			AC091942	176795300		30928	0	17878	48806
S/G/Y/R/B/O	NT_023132	AC091934	176795300	3	chr5	NT_023132	AC113391	176908971	3	2898	0	0	2898
S/G/Y/R/B/O	NT_023132	AC091934	176795300	3			AC024042	176739570		67393	9285	7826	84504
S/G/Y/R/B/O	NT_023132	AC091934	176795300	3			AC091942	176739570		43887	0	28885	72772
S/G/Y/R/B/O	NT_023132	AC113391	176908971	3
S/G/Y/R/B/O	NT_023132	AC113391	176908971	3			AC024042	176908971		74570	2382	4273	81225
S/G/Y/R/B/O	NT_023132	AC113391	176908971	3			AC091902	176908971		52665	3940	13979	70584