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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_030680 | AC114928 | 84567978 | 3 | chr5 | NT_030680 | AC117522 | 84613508 | 3 | 26767 | 0 | 0 | 26767 |
S/G/Y/R/B/O |
NT_030680 | AC117522 | 84613508 | 3 | chr5 | NT_030680 | AC114942 | 84756912 | 3 | 62529 | 0 | 0 | 62529 |
S/G/Y/R/B/O |
NT_030680 | AC114942 | 84756912 | 3 | chr5 | NT_030680 | AC025759 | 84812250 | 3 | 10791 | 0 | 0 | 10791 |
S/G/Y/R/B/O |
NT_030680 | AC114942 | 84756912 | 3 |   |   | AC023770 | 84756912 | | 52461 | 0 | 1019 | 53480 |
S/G/Y/R/B/O |
NT_030680 | AC114942 | 84756912 | 3 |   |   | AC025466 | 84756912 | | 22793 | 0 | 0 | 22793 |
S/G/Y/R/B/O |
NT_030680 | AC025759 | 84812250 | 3 | chr5 | NT_030680 | AC010486 | 84948863 | 3 | 48380 | 0 | 0 | 48380 |
S/G/Y/R/B/O |
NT_030680 | AC025759 | 84812250 | 3 |   |   | AC023770 | 84948863 | | 46172 | 1730 | 13632 | 61534 |
S/G/Y/R/B/O |
NT_030680 | AC025759 | 84812250 | 3 |   |   | AC025466 | 84948863 | | 44447 | 0 | 0 | 44447 |
S/G/Y/R/B/O |
NT_030680 | AC010486 | 84948863 | 3 | chr5 | NT_030680 | AC026700 | 85005628 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_030680 | AC026700 | 85005628 | 3 | chr5 | NT_030680 | AC010595 | 85053774 | 3 | 0 | 0 | 40386 | 40386 |
S/G/Y/R/B/O |
NT_030680 | AC010595 | 85053774 | 3 | chr5 | NT_030680 | AC010639 | 85192506 | 3 | 23661 | 0 | 0 | 23661 |
S/G/Y/R/B/O |
NT_030680 | AC010595 | 85053774 | 3 |   |   | AC021175 | 85192506 | | 28191 | 3371 | 37361 | 68923 |
S/G/Y/R/B/O |
NT_030680 | AC010639 | 85192506 | 3 | chr5 | NT_030680 | AC026414 | 85245010 | 3 | 0 | 0 | 27149 | 27149 |
S/G/Y/R/B/O |
NT_030680 | AC026414 | 85245010 | 3 | chr5 | NT_030680 | AC012641 | 85365522 | 3 | 0 | 0 | 1389 | 1389 |
S/G/Y/R/B/O |
NT_030680 | AC012641 | 85365522 | 3 | chr5 | NT_030680 | AC093309 | 85368666 | 3 | 2452 | 0 | 0 | 2452 |
S/G/Y/R/B/O |
NT_030680 | AC093309 | 85368666 | 3 | chr5 | NT_030680 | AC008506 | 85535634 | 3 | 17756 | 0 | 0 | 17756 |
S/G/Y/R/B/O |
NT_030680 | AC008506 | 85535634 | 3 | chr5 | NT_030680 | AC020923 | 85709413 | 3 | 2261 | 0 | 0 | 2261 |
S/G/Y/R/B/O |
NT_030680 | AC020923 | 85709413 | 3 | chr5 | NT_030680 | AC016550 | 85867119 | 3 | 58298 | 0 | 0 | 58298 |
S/G/Y/R/B/O |
NT_030680 | AC020923 | 85709413 | 3 |   |   | AC091994 | 85867119 | | 31260 | 2107 | 818 | 34185 |
S/G/Y/R/B/O |
NT_030680 | AC016550 | 85867119 | 3 | chr5 | NT_030680 | AC026444 | 85897293 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_030680 | AC026444 | 85897293 | 3 | chr5 | NT_030680 | AC108110 | 86013858 | 3 | 10043 | 0 | 0 | 10043 |
S/G/Y/R/B/O |
NT_030680 | AC026444 | 85897293 | 3 |   |   | AC091909 | 85709413 | | 33882 | 0 | 0 | 33882 |
S/G/Y/R/B/O |
NT_030680 | AC108110 | 86013858 | 3 | chr5 | NT_030680 | AC010361 | 86140538 | 3 | 60086 | 0 | 0 | 60086 |
S/G/Y/R/B/O |
NT_030680 | AC010361 | 86140538 | 3 | chr5 | NT_030680 | AC008539 | 86222097 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_030680 | AC010361 | 86140538 | 3 |   |   | AC016548 | 85897293 | | 16682 | 1809 | 10274 | 28765 |
S/G/Y/R/B/O |
NT_030680 | AC010361 | 86140538 | 3 |   |   | AC016615 | 85897293 | | 12049 | 0 | 0 | 12049 |
S/G/Y/R/B/O |
NT_030680 | AC008539 | 86222097 | 3 | chr5 | NT_030680 | AC091429 | 86338903 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_030680 | AC008539 | 86222097 | 3 |   |   | AC016548 | 86013858 | | 18498 | 0 | 13870 | 32368 |
S/G/Y/R/B/O |
NT_030680 | AC008539 | 86222097 | 3 |   |   | AC016615 | 86013858 | | 49890 | 2633 | 0 | 52523 |
S/G/Y/R/B/O |
NT_030680 | AC091429 | 86338903 | 3 | chr5 | NT_030680 | AC114966 | 86385039 | 3 | 25110 | 0 | 1252 | 26362 |
S/G/Y/R/B/O |
NT_030680 | AC091429 | 86338903 | 3 |   |   | AC025139 | 86013858 | | 26654 | 0 | 0 | 26654 |
S/G/Y/R/B/O |
NT_030680 | AC114966 | 86385039 | 3 | chr5 | NT_030680 | AC109492 | 86492905 | 3 | 2975 | 0 | 0 | 2975 |
S/G/Y/R/B/O |
NT_030680 | AC114966 | 86385039 | 3 |   |   | AC025139 | 86385039 | | 53511 | 0 | 1608 | 55119 |
S/G/Y/R/B/O |
NT_030680 | AC114966 | 86385039 | 3 |   |   | AC093306 | 86338903 | | 59605 | 1376 | 0 | 60981 |
S/G/Y/R/B/O |
NT_030680 | AC109492 | 86492905 | 3 | chr5 | NT_030680 | AC008394 | 86624687 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_030680 | AC109492 | 86492905 | 3 |   |   | AC022920 | 86492905 | | 90563 | 0 | 25859 | 116422 |
S/G/Y/R/B/O |
NT_030680 | AC109492 | 86492905 | 3 |   |   | AC093306 | 86492905 | | 57074 | 0 | 0 | 57074 |
S/G/Y/R/B/O |
NT_030680 | AC008394 | 86624687 | 3 | chr5 | NT_030680 | AC024576 | 86718417 | 3 | 74945 | 0 | 0 | 74945 |
S/G/Y/R/B/O |
NT_030680 | AC008394 | 86624687 | 3 |   |   | AC022920 | 86385039 | | 68547 | 0 | 24417 | 92964 |
S/G/Y/R/B/O |
NT_030680 | AC024576 | 86718417 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_030680 | AC024576 | 86718417 | 3 | chr5 | NT_037660 | AC126776 | 86763671 | 3 | 16630 | 0 | 0 | 16630 |
S/G/Y/R/B/O |
NT_030680 | AC024576 | 86718417 | 3 |   |   | AC022920 | 86624687 | | 12789 | 0 | 0 | 12789 |
S/G/Y/R/B/O |
NT_030680 | AC024576 | 86718417 | 3 |   |   | AC126756 | 86624687 | | 31321 | 0 | 0 | 31321 |
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