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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_004350 NT_004321 NT_004547 NT_034374 NT_022058 NT_021917 NT_028054 NT_032967
NT_021937 NT_034375 NT_022041 NT_004873 NT_034376 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_034377 NT_030571 NT_004782 NT_028053 NT_034378
NT_004538 NT_034379 NT_034380 NT_004511 NT_004852 NT_032963 NT_032971 NT_032972
NT_004386 NT_032977 NT_004424 NT_032973 NT_029223 NT_029865 NT_031737 NT_004636
NT_034381 NT_032948 NT_034382 NT_004464 NT_034383 NT_034384 NT_004483 NT_032974
NT_004902 NT_034385 NT_026943 NT_034386 NT_029231 NT_034387 NT_004658 NT_004686
NT_034388 NT_021979 NT_034389 NT_034390 NT_034391 NT_030565 NT_034392 NT_034393
NT_028050 NT_030567 NT_034394 NT_021977 NT_034395 NT_029860 NT_019273 NT_034396
NT_031697 NT_004754 NT_032975 NT_022052 NT_034397 NT_022071 NT_004434 NT_034398
NT_034399 NT_034400 NT_034401 NT_034402 NT_034403 NT_032962 NT_034428 NT_021907
NT_004441 NT_030577 NT_004858 NT_004982 NT_026945 NT_004668 NT_034404 NT_034405
NT_029874 NT_034406 NT_004487 NT_021905 NT_004599 NT_034407 NT_004671 NT_004416
NT_029862 NT_034408 NT_034409 NT_034410 NT_034411 NT_032947 NT_029226 NT_021877
NT_031718 NT_034412 NT_034413 NT_004612 NT_034414 NT_034415 NT_021953 NT_004861
NT_004525 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433 NT_034416
NT_030561 NT_034417 NT_004836 NT_004771 NT_004734 NT_031700 NT_004536 NT_032964
NT_031730 NT_029870 NT_032969 NT_032968 NT_034418


  NT_004350
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004350AC11449811          
S/G/Y/R/B/O NT_004350AL6698311235832RH503761714.48  1897.502 AC024998.3, AF198096.4, AL365438.9
S/G/Y/R/B/O NT_004350AL6698312040892RH76697111.42    3 AF276983.2, AL669831.11
S/G/Y/R/B/O NT_004350AL6273092123232          
S/G/Y/R/B/O NT_004350AC1152873787381RH76697111.42    3 AF276983.2, AL669831.11
S/G/Y/R/B/O NT_004350AC0798603920551RH36498111.01    1 AC079860.3, AF276983.2, AL645608.5
S/G/Y/R/B/O NT_004350AF2769833927281RH49928111.01  16.801 AC027823.1, AC027823.1, AL645608.5
S/G/Y/R/B/O NT_004350AL3907194787261RH36625111.11    1 AC079860.3, AL390719.32, AL645608.5
S/G/Y/R/B/O NT_004350AL3907194787661RH47878115.89    1 AC079860.3, AL390719.32, AL645608.5
S/G/Y/R/B/O NT_004350AL3907194788751RH668248440.12    1 AC079860.3, AL390719.32, AL645608.5
S/G/Y/R/B/O NT_004350AL3907195200231RH67832111.01    1 AC079860.3, AL390719.32, AL645608.5
S/G/Y/R/B/O NT_004350AL3907196476821RH1024581767.95    2 AC104335.1, AL390719.32
S/G/Y/R/B/O NT_004350AL3907196481151RH259241771.40    2 AC104335.1, AL390719.32
S/G/Y/R/B/O NT_004350AL1627416789822RH69218115.89    1 AL162741.35, AL390719.32
S/G/Y/R/B/O NT_004350AL1627416967732RH50230111.01  16.801 AL162741.35
S/G/Y/R/B/O NT_004350AL1627417166962RH64387115.89  110.301 AL162741.35
S/G/Y/R/B/O NT_004350AL1627417169762RH47530115.89    1 AL162741.35
S/G/Y/R/B/O NT_004350AL1627417526422RH70619115.89    1 AL162741.35
S/G/Y/R/B/O NT_004350AL1627417537102RH65275115.89    1 AL162741.35
S/G/Y/R/B/O NT_004350AL1392877727682RH91825115.89    1 AL139287.24
S/G/Y/R/B/O NT_004350AL1392877966152RH68255115.89    1 AC026283.2, AL139287.24
S/G/Y/R/B/O NT_004350AL1392877967302RH4725418.18    1 AC026283.2, AL139287.24
S/G/Y/R/B/O NT_004350AL1392878141212RH10252516.26    1 AC026283.2, AL139287.24
S/G/Y/R/B/O NT_004350AC0262838351981RH4193515.06    1 AC026283.2, AL139287.24, AL732582.3
S/G/Y/R/B/O NT_004350AC0262838490461RH18260115.89    1 AC026283.2
S/G/Y/R/B/O NT_004350AC0262838492481RH63916115.89  110.301 AC026283.2
S/G/Y/R/B/O NT_004350AL3912448534663RH26384115.89    1 AC026283.2, AL391244.11, AL732582.3
S/G/Y/R/B/O NT_004350AL3912448643163RH24933111.42    1 AC026283.2, AL391244.11, AL732582.3
S/G/Y/R/B/O NT_004350AL3912448643673RH15933115.89    1 AC026283.2, AL391244.11, AL732582.3
S/G/Y/R/B/O NT_004350AL3912448661893RH103727115.89    1 AC026283.2, AL391244.11, AL732582.3
S/G/Y/R/B/O NT_004350AL3912448998003RH8020113.62    1 AC026283.2, AC093615.1, AL391244.11, AL732582.3
S/G/Y/R/B/O NT_004350AL3912449029963RH16652115.89    1 AC026283.2, AC093615.1, AL391244.11, AL732582.3
S/G/Y/R/B/O NT_004350AL3912449030373RH47517113.15    1 AC026283.2, AC093615.1, AL391244.11, AL732582.3
S/G/Y/R/B/O NT_004350AL1579459196143          
S/G/Y/R/B/O NT_004350AC0936159719331RH4508419.66    2 AC093615.1, AL645728.18, AL713970.8
S/G/Y/R/B/O NT_004350AC0936159734721RH27214111.42    2 AC093615.1, AL645728.18, AL713970.8
S/G/Y/R/B/O NT_004350AC0936159740571RH70327115.89    2 AC093615.1, AL645728.18, AL713970.8
S/G/Y/R/B/O NT_004350AC0936159742671RH36904113.15    2 AC093615.1, AL645728.18, AL713970.8
S/G/Y/R/B/O NT_004350AC0936159743411RH10603115.89    2 AC093615.1, AL645728.18, AL713970.8
S/G/Y/R/B/O NT_004350AL71397010115631RH70284115.07    1 AL691432.3, AL713970.8
S/G/Y/R/B/O NT_004350AL71397011099081RH4776416.36    1 AL691432.3, AL713970.8
S/G/Y/R/B/O NT_004350AL71397011178961RH74860113.36    1 AL691432.3, AL713970.8
S/G/Y/R/B/O NT_004350AL64572810595981RH65507115.89    1 AC093615.1, AL645728.18, AL713970.8
S/G/Y/R/B/O NT_004350AL64572810688751RH64278114.16  112.101 AC093615.1, AL645728.18, AL713970.8
S/G/Y/R/B/O NT_004350AL64572810895711RH10603115.89    2 AC093615.1, AL645728.18, AL713970.8
S/G/Y/R/B/O NT_004350AL64572810895771RH70327115.89    2 AC093615.1, AL645728.18, AL713970.8
S/G/Y/R/B/O NT_004350AL64572810896981RH36904113.15    2 AC093615.1, AL645728.18, AL713970.8
S/G/Y/R/B/O NT_004350AL64572810904301RH27214111.42    2 AC093615.1, AL645728.18, AL713970.8
S/G/Y/R/B/O NT_004350AL64572810919051RH4508419.66    2 AC093615.1, AL645728.18, AL713970.8
S/G/Y/R/B/O NT_004350AL69143211296151RH4980219.76  19.402 AL031282.1, AL691432.3, AL691432.3


  NT_004350 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004350AL69143211426171RH10348110.80    2 AL031282.1, AL691432.3, AL691432.3
S/G/Y/R/B/O NT_004350AL69143211426491RH49860115.89  113.802 AL031282.1, AL691432.3, AL691432.3
S/G/Y/R/B/O NT_004350AL69143211427751RH12898115.89    2 AL031282.1, AL691432.3, AL691432.3
S/G/Y/R/B/O NT_004350AL69143211432011RH47738115.07    2 AL031282.1, AL691432.3, AL691432.3
S/G/Y/R/B/O NT_004350AL69143211454071RH48025112.75    2 AL031282.1, AL691432.3, AL691432.3
S/G/Y/R/B/O NT_004350AL69143211458431RH41976115.89    2 AL031282.1, AL691432.3, AL691432.3
S/G/Y/R/B/O NT_004350AL03128211874763RH13866  150.00  2 AL031282.1, AL031282.1, AL355675.3, AL691432.3
S/G/Y/R/B/O NT_004350AL03128211874833RH104480115.89    2 AL031282.1, AL031282.1, AL355675.3, AL691432.3
S/G/Y/R/B/O NT_004350AL03128211875013RH4182619.97    2 AL031282.1, AL031282.1, AL355675.3, AL691432.3
S/G/Y/R/B/O NT_004350AL03128211875183RH1063914.62    2 AL031282.1, AL031282.1, AL355675.3, AL691432.3
S/G/Y/R/B/O NT_004350AL03128211912823RH25018115.89    1 AL031282.1
S/G/Y/R/B/O NT_004350AL03128211913433RH69193115.89    1 AL031282.1
S/G/Y/R/B/O NT_004350AL03128212026393RH4980219.76  19.402 AL031282.1, AL691432.3, AL691432.3
S/G/Y/R/B/O NT_004350AL03128212162403RH10348110.80    2 AL031282.1, AL691432.3, AL691432.3
S/G/Y/R/B/O NT_004350AL03128212162723RH49860115.89  113.802 AL031282.1, AL691432.3, AL691432.3
S/G/Y/R/B/O NT_004350AL03128212163983RH12898115.89    2 AL031282.1, AL691432.3, AL691432.3
S/G/Y/R/B/O NT_004350AL03128212168243RH47738115.07    2 AL031282.1, AL691432.3, AL691432.3
S/G/Y/R/B/O NT_004350AL03128212190513RH48025112.75    2 AL031282.1, AL691432.3, AL691432.3
S/G/Y/R/B/O NT_004350AL03128212194873RH41976115.89    2 AL031282.1, AL691432.3, AL691432.3
S/G/Y/R/B/O NT_004350AL03128212400863RH13866  150.00  2 AL031282.1, AL031282.1, AL355675.3, AL691432.3
S/G/Y/R/B/O NT_004350AL03128212400933RH104480115.89    2 AL031282.1, AL031282.1, AL355675.3, AL691432.3
S/G/Y/R/B/O NT_004350AL03128212401113RH4182619.97    2 AL031282.1, AL031282.1, AL355675.3, AL691432.3
S/G/Y/R/B/O NT_004350AL03128212401283RH1063914.62    2 AL031282.1, AL031282.1, AL355675.3, AL691432.3
S/G/Y/R/B/O NT_004350AL03128212413743RH48431115.89    1 AL031282.1, AL355675.3, AL691432.3
S/G/Y/R/B/O NT_004350AL03128212469863RH45111115.89    1 AL031282.1, AL691432.3
S/G/Y/R/B/O NT_004350AL03128212721173RH50065115.07  113.801 AL031282.1, AL355675.3
S/G/Y/R/B/O NT_004350AL03128212741463RH11582115.07    1 AL031282.1
S/G/Y/R/B/O NT_004350AL03128212745813RH64187114.16    1 AL031282.1, AL355675.3
S/G/Y/R/B/O NT_004350AL03128212746653RH11807115.89    1 AL031282.1, AL355675.3
S/G/Y/R/B/O NT_004350AL03128212845423RH65426115.89    1 AL031282.1, AL355675.3
S/G/Y/R/B/O NT_004350AL10991712876803          
S/G/Y/R/B/O NT_004350AL39184514508711          
S/G/Y/R/B/O NT_004350AL64570315913052RH49726112.85  112.601 AC068198.11, AL645703.18
S/G/Y/R/B/O NT_004350AL59082216530421RH64431115.0710.00112.201 AC068198.11, AL590822.18
S/G/Y/R/B/O NT_004350AL59082216729011RH11740115.07    1 AC068198.11, AL590822.18
S/G/Y/R/B/O NT_004350AL59082216743001RH49991115.89  112.101 AC068198.11, AL590822.18
S/G/Y/R/B/O NT_004350AL59082216775071RH98469115.89    1 AC068198.11, AL590822.18
S/G/Y/R/B/O NT_004350AL59082216816011RH103396115.89    1 AC068198.11, AL590822.18
S/G/Y/R/B/O NT_004350AL59082216859821RH50661115.07  113.801 AC068198.11, AL590822.18
S/G/Y/R/B/O NT_004350AL59082216957511RH13378114.16112.00  1 AL590822.18
S/G/Y/R/B/O NT_004350AL59082217669971RH14633  168.00  1 AC025624.3, AC025624.3, AC025802.3, AC092934.1, AL590822.18
S/G/Y/R/B/O NT_004350AL59082217963891RH46562114.16    1 AL590822.18
S/G/Y/R/B/O NT_004350AC09293417966421          
S/G/Y/R/B/O NT_004350AL58973918058243          
S/G/Y/R/B/O NT_004350AL51347718363673RH16553115.89    1 AC025624.3, AC025802.3, AC092934.1, AL513477.21
S/G/Y/R/B/O NT_004350AL51347718498993RH47961115.89    1 AC025624.3, AC025802.3, AC092934.1, AL513477.21
S/G/Y/R/B/O NT_004350AL51347718646743RH48602113.05    1 AC025624.3, AC025802.3, AC092934.1, AL513477.21
S/G/Y/R/B/O NT_004350AL51347718906593RH75648111.01    1 AL513477.21
S/G/Y/R/B/O NT_004350AL51347718908483RH12261115.89    1 AL513477.21
S/G/Y/R/B/O NT_004350AL51347718917123RH64277115.07  110.301 AL513477.21


  NT_004350 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004350AL51347718922913RH68782115.89    1 AL513477.21
S/G/Y/R/B/O NT_004350AL51353119336683          
S/G/Y/R/B/O NT_004350AL13924619953963RH4687316.26    1 AL139246.20
S/G/Y/R/B/O NT_004350AL13924620447193RH91703113.05    1 AL139246.20
S/G/Y/R/B/O NT_004350AL13924620447833RH46876111.32    1 AL139246.20
S/G/Y/R/B/O NT_004350AL13924620450133RH7591310.58    1 AL139246.20
S/G/Y/R/B/O NT_004350AL13924620635023RH68845115.89    1 AL139246.20
S/G/Y/R/B/O NT_004350AL13924620780423RH17113115.89    1 AL139246.20
S/G/Y/R/B/O NT_004350AL58974620884003          
S/G/Y/R/B/O NT_004350 - RH103110115.89    0 AL645608.5
S/G/Y/R/B/O NT_004350 - TIGR-A002K15    11.601 AL691449.10
S/G/Y/R/B/O NT_004350 - RH104543115.07    0  
S/G/Y/R/B/O NT_004350 - CHLC.GGAT3G04    11.801 AL096855.48
S/G/Y/R/B/O NT_004350 - RH10455210.58    0  
S/G/Y/R/B/O NT_004350 - SGC35316    12.001 AC025220.2, AC025225.3, AL009183.10, AL512402.10
S/G/Y/R/B/O NT_004350 - RH104557112.95    0  
S/G/Y/R/B/O NT_004350 - WI-16255    14.101 AL691449.10
S/G/Y/R/B/O NT_004350 - RH104569115.89    0  
S/G/Y/R/B/O NT_004350 - RH11651114.16    0  
S/G/Y/R/B/O NT_004350 - RH4446812.39    1 AL365441.6, Z98884.11
S/G/Y/R/B/O NT_004350 - RH6440514.18    1 AC025225.3, AL034417.14, AL512402.10
S/G/Y/R/B/O NT_004350 - RH50454110.70  18.600 AL691432.3, AL713970.8
S/G/Y/R/B/O NT_004350 - RH6433210.69    1 AL031847.17, AL356496.4
S/G/Y/R/B/O NT_004350 - RH66048112.95    0  
S/G/Y/R/B/O NT_004350 - RH67944115.89    0 AL359496.30
S/G/Y/R/B/O NT_004350 - RH75372113.05    0  
S/G/Y/R/B/O NT_004350 - RH7582119.45    1 AL359826.6, AL512413.21
S/G/Y/R/B/O NT_004350 - RH7649919.35    1 AC123902.1, AL365330.15, AL390734.5, AL691523.2
S/G/Y/R/B/O NT_004350 - RH7814419.66    1 AL691523.2
S/G/Y/R/B/O NT_004350 - RH91200115.89    0  
S/G/Y/R/B/O NT_004350 - RH9168512.39    1 AL031847.17, AL356496.4
S/G/Y/R/B/O NT_004350 - RH98483115.89    0