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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_004350 NT_004321 NT_004547 NT_034374 NT_022058 NT_021917 NT_028054 NT_032967
NT_021937 NT_034375 NT_022041 NT_004873 NT_034376 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_034377 NT_030571 NT_004782 NT_028053 NT_034378
NT_004538 NT_034379 NT_034380 NT_004511 NT_004852 NT_032963 NT_032971 NT_032972
NT_004386 NT_032977 NT_004424 NT_032973 NT_029223 NT_029865 NT_031737 NT_004636
NT_034381 NT_032948 NT_034382 NT_004464 NT_034383 NT_034384 NT_004483 NT_032974
NT_004902 NT_034385 NT_026943 NT_034386 NT_029231 NT_034387 NT_004658 NT_004686
NT_034388 NT_021979 NT_034389 NT_034390 NT_034391 NT_030565 NT_034392 NT_034393
NT_028050 NT_030567 NT_034394 NT_021977 NT_034395 NT_029860 NT_019273 NT_034396
NT_031697 NT_004754 NT_032975 NT_022052 NT_034397 NT_022071 NT_004434 NT_034398
NT_034399 NT_034400 NT_034401 NT_034402 NT_034403 NT_032962 NT_034428 NT_021907
NT_004441 NT_030577 NT_004858 NT_004982 NT_026945 NT_004668 NT_034404 NT_034405
NT_029874 NT_034406 NT_004487 NT_021905 NT_004599 NT_034407 NT_004671 NT_004416
NT_029862 NT_034408 NT_034409 NT_034410 NT_034411 NT_032947 NT_029226 NT_021877
NT_031718 NT_034412 NT_034413 NT_004612 NT_034414 NT_034415 NT_021953 NT_004861
NT_004525 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433 NT_034416
NT_030561 NT_034417 NT_004836 NT_004771 NT_004734 NT_031700 NT_004536 NT_032964
NT_031730 NT_029870 NT_032969 NT_032968 NT_034418


  NT_029862
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_029862AL1394181946142013RH470481655.84    2 AL139418.9
S/G/Y/R/B/O NT_029862AL1394181946142033RH709521658.66    2 AL139418.9
S/G/Y/R/B/O NT_029862AL1394181946538393RH708631658.66    1 AL139418.9
S/G/Y/R/B/O NT_029862AL1394181946548383RH791641658.66    1 AL139418.9
S/G/Y/R/B/O NT_029862AL3538091946885813          
S/G/Y/R/B/O NT_029862AL6272081948497103RH1030141656.45    1 AL627208.17
S/G/Y/R/B/O NT_029862AL3563151948760573RH459081659.95    1 AL356315.12
S/G/Y/R/B/O NT_029862AL5133251949181743RH500821659.95  1815.501  
S/G/Y/R/B/O NT_029862AL1363221951203623RH753851659.98    1 AL136322.24
S/G/Y/R/B/O NT_029862AL1363221951204723RH1031471659.95    1 AL136322.24
S/G/Y/R/B/O NT_029862AL1363221951406633AFM329VC1    1815.301 AL136322.24
S/G/Y/R/B/O NT_029862AL1363221951653283RH913971659.95    1 AC008110.2, AL136322.24
S/G/Y/R/B/O NT_029862AL1391361951739133RH915941659.95    1 AC008110.2, AL139136.17
S/G/Y/R/B/O NT_029862AL1391361951740863RH754391661.42    1 AC008110.2, AL139136.17
S/G/Y/R/B/O NT_029862AL1391361952006573RH473601659.95    1 AC008110.2, AL139136.17
S/G/Y/R/B/O NT_029862AL1391361952055503RH655041656.09    1 AC008110.2, AL139136.17
S/G/Y/R/B/O NT_029862AL1391361953099763RH485251659.98    1 AC008110.2, AL138777.6, AL139136.17
S/G/Y/R/B/O NT_029862AL3652581953743443WI-3002    1815.501 AL138777.6, AL365258.24
S/G/Y/R/B/O NT_029862AL3652581953817383RH14599  17616.001813.801 AL138777.6, AL365258.24
S/G/Y/R/B/O NT_029862AL3652581953817383RH642941656.09    1 AL138777.6, AL365258.24
S/G/Y/R/B/O NT_029862AL3652581954426333RH703221659.98    1 AL138777.6, AL365258.24
S/G/Y/R/B/O NT_029862AL5901151954771073          
S/G/Y/R/B/O NT_029862AL1361361956576343          
S/G/Y/R/B/O NT_029862AC0935611958655193RH642561660.70  1815.401 AC084252.2, AC093561.2
S/G/Y/R/B/O NT_029862AC0935611958664163RH684571659.95    1 AC093561.2
S/G/Y/R/B/O NT_029862AC0935611958665543RH676161659.95    1 AC087438.1, AC093561.2
S/G/Y/R/B/O NT_029862AC0935611958962493WI-9858    1815.601 AC087438.1, AC093561.2
S/G/Y/R/B/O NT_029862AC0934191959522183WI-5370    1817.001 AC093419.2
S/G/Y/R/B/O NT_029862AC0934191959950193RH498231661.26  1817.001 AC093419.2
S/G/Y/R/B/O NT_029862AC0934191960160633RH644911662.05    1 AC093419.2
S/G/Y/R/B/O NT_029862AC0934191960269363RH504591660.66  1814.701 AC084252.2, AC087438.1, AC093419.2
S/G/Y/R/B/O NT_029862AL4503521960659903          
S/G/Y/R/B/O NT_029862AL1574021962126063AFM207WB12    1815.601 AC025126.4, AL157402.19
S/G/Y/R/B/O NT_029862AL1574021963191153AFMA072YH9    1815.001 AL157402.19
S/G/Y/R/B/O NT_029862AL1574021963380553CHLC.GATA48B01    1817.001 AL157402.19
S/G/Y/R/B/O NT_029862AL1574021963471473RH151411660.60    1 AL157402.19
S/G/Y/R/B/O NT_029862AL1574021963471743RH925  17650.00  1 AL157402.19
S/G/Y/R/B/O NT_029862AL1574021963614773RH986761660.56    1 AL157402.19
S/G/Y/R/B/O NT_029862AC1179461964235043RH464151660.56    1 AC117946.2
S/G/Y/R/B/O NT_029862AC1179461964377773RH764321660.60    1 AC117946.2
S/G/Y/R/B/O NT_029862AC1179461964505293RH455411661.87    1 AC117946.2
S/G/Y/R/B/O NT_029862AC1179461964517873RH687021660.60    1 AC117946.2
S/G/Y/R/B/O NT_029862AC1179461964526423RH709561660.60    1 AC117946.2
S/G/Y/R/B/O NT_029862AL1363211964839683RH362221661.77    1 AL136321.5
S/G/Y/R/B/O NT_029862AL1363211964981543RH365831661.77    1 AL136321.5
S/G/Y/R/B/O NT_029862AL1363211965313683RH647331660.60    1 AL136321.5
S/G/Y/R/B/O NT_029862AC0966311967068563AFM319WH1    1819.901 AC011778.3, AC026240.2, AC096631.2
S/G/Y/R/B/O NT_029862AC0966311967420823RH505351662.18  1819.901 AC011778.3, AC026240.2, AC096631.2
S/G/Y/R/B/O NT_029862AC1059411967702803          
S/G/Y/R/B/O NT_029862AC0996731970138591WI-2276    1819.901 AC012200.5, AC099673.1


  NT_029862 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_029862AC0993351970289483          
S/G/Y/R/B/O NT_029862AC0920181971866133          
S/G/Y/R/B/O NT_029862AL4502441972941203          
S/G/Y/R/B/O NT_029862AL5906741973772213          
S/G/Y/R/B/O NT_029862AL5962661974892773          
S/G/Y/R/B/O NT_029862AL4456871975044203          
S/G/Y/R/B/O NT_029862AL5916701976705283          
S/G/Y/R/B/O NT_029862AC0966331977649663RH643931662.05  1822.001 AC096633.2, AF190464.1, AL513362.6
S/G/Y/R/B/O NT_029862AC0966331977650603RH675831662.05    1 AL513362.6
S/G/Y/R/B/O NT_029862AC0966331977916153RH687161661.94    1 AC096633.2, AF190464.1, AL513362.6
S/G/Y/R/B/O NT_029862AC0966331978432733AFM292VD5    1821.501 AC096633.2
S/G/Y/R/B/O NT_029862AC0966331978445093RH492681663.6817682.00  1 AC096633.2
S/G/Y/R/B/O NT_029862AC0966331978495363RH755781665.89    1 AC096633.2, AF190464.1
S/G/Y/R/B/O NT_029862AC0966331978763193RH942321665.63    1 AC096633.2, AF190464.1
S/G/Y/R/B/O NT_029862AL5901261978848473          
S/G/Y/R/B/O NT_029862AC0970651980256433RH660021662.05    1 AC097065.2, AC104461.2
S/G/Y/R/B/O NT_029862AC1044611981051313SGC34542    1824.001 AC104461.2
S/G/Y/R/B/O NT_029862AC1044611981051313RH506771667.02    1 AC104461.2
S/G/Y/R/B/O NT_029862AC1044611981051373RH473831665.31    1 AC104461.2
S/G/Y/R/B/O NT_029862AC1044611981052053RH264411665.08    1 AC104461.2
S/G/Y/R/B/O NT_029862AC1044611981053333RH714241665.63    1 AC104461.2
S/G/Y/R/B/O NT_029862AC1044611981120823RH986521667.02    1 AC104461.2
S/G/Y/R/B/O NT_029862AC1044611981773213RH637931665.11  1821.501 AC104461.2, AL359834.18
S/G/Y/R/B/O NT_029862AC1044611981775703RH644611665.0817682.001823.401 AC104461.2, AL359834.18
S/G/Y/R/B/O NT_029862AC1044611981777183RH158741667.02    1 AL359834.18
S/G/Y/R/B/O NT_029862AL3598341982104783RH477081665.11    1 AL359834.18
S/G/Y/R/B/O NT_029862AL4454831982510213RH936851665.08    1 AL445483.13
S/G/Y/R/B/O NT_029862AL4454831982514253RH498031665.6317689.001823.301 AL445483.13
S/G/Y/R/B/O NT_029862AL4454831982515983RH174021667.02    1 AL445483.13
S/G/Y/R/B/O NT_029862AL4454831983433043RH661831665.49    1 AL445483.13, AL445653.5
S/G/Y/R/B/O NT_029862AL4454831983434223RH264731665.31    1 AL445483.13
S/G/Y/R/B/O NT_029862AL4454831983497293RH678531667.02    1 AL445483.13, AL445653.5
S/G/Y/R/B/O NT_029862AL4454831983504583RH707901667.02    1 AL445483.13, AL445653.5
S/G/Y/R/B/O NT_029862AL4501041984425423RH698321667.02    1 AC025349.2, AL445653.5, AL450104.14
S/G/Y/R/B/O NT_029862AL4501041984825573RH644281665.3817698.001823.501 AC025349.2, AL450104.14
S/G/Y/R/B/O NT_029862AL4501041985491593RH692231665.18    1 AC025349.2, AC027113.3, AC099756.2, AL450104.14
S/G/Y/R/B/O NT_029862AL4501041985566813RH921121665.63    1 AC025349.2, AC027113.3, AC099756.2, AL450104.14
S/G/Y/R/B/O NT_029862AL4501041985573443RH1019231665.11    1 AC025349.2, AC027113.3, AC099756.2, AL450104.14
S/G/Y/R/B/O NT_029862AL4501041985596393RH638111665.63  1823.301 AC025349.2, AC027113.3, AC099756.2, AL450104.14
S/G/Y/R/B/O NT_029862AC0997561985693643WI-4047    1823.501 AC025349.2, AC027113.3, AC099756.2
S/G/Y/R/B/O NT_029862AC0997561986686323RH507891665.69  1823.201 AC027113.3, AC099756.2
S/G/Y/R/B/O NT_029862AC0997561986686323RH699111667.02    1 AC027113.3, AC099756.2
S/G/Y/R/B/O NT_029862AC0997561986687553RH107331667.02    1 AC027113.3, AC099756.2
S/G/Y/R/B/O NT_029862AC0997561986700433RH1231  17698.00  1 AC027113.3, AC099756.2
S/G/Y/R/B/O NT_029862AC0997561986721343RH1041181667.02    1 AC027113.3, AC099756.2
S/G/Y/R/B/O NT_029862AC0997561986730993RH765071661.98    1 AC027113.3, AC099756.2
S/G/Y/R/B/O NT_029862AL3584731987387613RH710991665.6317698.00  1 AL358473.10
S/G/Y/R/B/O NT_029862AL3584731987494993RH111381665.11    1 AL358473.10
S/G/Y/R/B/O NT_029862AL3584731987500593RH111371667.02    1 AL358473.10
S/G/Y/R/B/O NT_029862AL1391591987771311RH710401665.63    1 AL139159.5


  NT_029862 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_029862AL1391591988038611RH637811665.31  1821.601 AL139159.5
S/G/Y/R/B/O NT_029862AL1391591988038621WI-13088    1823.501 AL139159.5
S/G/Y/R/B/O NT_029862AL1391591988038621RH498991667.08    1 AL139159.5
S/G/Y/R/B/O NT_029862AL1391591988207401RH493301666.41    1 AL139159.5
S/G/Y/R/B/O NT_029862AC1039251989236451RH702001667.19    1 AC073202.4, AC103925.1
S/G/Y/R/B/O NT_029862AC1039251989785651D1S477    1823.301 AC073202.4, AC103925.1
S/G/Y/R/B/O NT_029862AC1194271990260481RH643641665.11  1824.101 AC103925.1, AC119427.1
S/G/Y/R/B/O NT_029862AC1194271990261761RH110161667.19    1 AC103925.1, AC119427.1
S/G/Y/R/B/O NT_029862AC1194271993168871RH496941665.11  1823.401 AC119427.1
S/G/Y/R/B/O NT_029862AC0966771990767033RH42801  17708.00  1 AC083954.2, AC096677.2, AC119427.1
S/G/Y/R/B/O NT_029862AC0966771990767243RH417991665.31    1 AC083954.2, AC096677.2
S/G/Y/R/B/O NT_029862AC0966771990776493RH647091665.11    1 AC083954.2, AC096677.2, AC119427.1
S/G/Y/R/B/O NT_029862AC0966771990810673RH98051667.19    1 AC096677.2, AC119427.1
S/G/Y/R/B/O NT_029862AC0966771990820873RH486761666.41    1 AC083954.2, AC096677.2, AC119427.1
S/G/Y/R/B/O NT_029862AC0966771991080293D1S306    1825.301 AC083954.2, AC096677.2
S/G/Y/R/B/O NT_029862AC0966771991080293RH134521669.0317708.00  1 AC083954.2, AC096677.2
S/G/Y/R/B/O NT_029862AC0966771991376983RH418431666.41    1 AC083954.2, AC096677.2, AL355503.3
S/G/Y/R/B/O NT_029862AC0966771991557483RH642581666.4117704.001825.301 AC083954.2, AC096677.2, AL355503.3
S/G/Y/R/B/O NT_029862AC0966771991558803RH691221669.13    1 AC083954.2, AC096677.2, AL355503.3
S/G/Y/R/B/O NT_029862AC0966771991565173RH710771669.0317705.00  1 AC083954.2, AC096677.2, AL355503.3
S/G/Y/R/B/O NT_029862AC0966771992531693WI-10717    1825.201 AC096677.2, AL355503.3
S/G/Y/R/B/O NT_029862AL5127881992979433          
S/G/Y/R/B/O NT_029862 - RH760181662.79    1 AL592114.13
S/G/Y/R/B/O NT_029862 - RH33455  17686.00  1 AC053497.4, AL356356.17
S/G/Y/R/B/O NT_029862 - CHLC.GATA71A07    1818.400  
S/G/Y/R/B/O NT_029862 - RH767531665.63    1 AL592146.8
S/G/Y/R/B/O NT_029862 - RH933271666.41    0