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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_004350 NT_004321 NT_004547 NT_034374 NT_022058 NT_021917 NT_028054 NT_032967
NT_021937 NT_034375 NT_022041 NT_004873 NT_034376 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_034377 NT_030571 NT_004782 NT_028053 NT_034378
NT_004538 NT_034379 NT_034380 NT_004511 NT_004852 NT_032963 NT_032971 NT_032972
NT_004386 NT_032977 NT_004424 NT_032973 NT_029223 NT_029865 NT_031737 NT_004636
NT_034381 NT_032948 NT_034382 NT_004464 NT_034383 NT_034384 NT_004483 NT_032974
NT_004902 NT_034385 NT_026943 NT_034386 NT_029231 NT_034387 NT_004658 NT_004686
NT_034388 NT_021979 NT_034389 NT_034390 NT_034391 NT_030565 NT_034392 NT_034393
NT_028050 NT_030567 NT_034394 NT_021977 NT_034395 NT_029860 NT_019273 NT_034396
NT_031697 NT_004754 NT_032975 NT_022052 NT_034397 NT_022071 NT_004434 NT_034398
NT_034399 NT_034400 NT_034401 NT_034402 NT_034403 NT_032962 NT_034428 NT_021907
NT_004441 NT_030577 NT_004858 NT_004982 NT_026945 NT_004668 NT_034404 NT_034405
NT_029874 NT_034406 NT_004487 NT_021905 NT_004599 NT_034407 NT_004671 NT_004416
NT_029862 NT_034408 NT_034409 NT_034410 NT_034411 NT_032947 NT_029226 NT_021877
NT_031718 NT_034412 NT_034413 NT_004612 NT_034414 NT_034415 NT_021953 NT_004861
NT_004525 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433 NT_034416
NT_030561 NT_034417 NT_004836 NT_004771 NT_004734 NT_031700 NT_004536 NT_032964
NT_031730 NT_029870 NT_032969 NT_032968 NT_034418


  NT_004982
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004982AL1388991559381083RH938401567.12    1 AB045357.1, AL138899.23
S/G/Y/R/B/O NT_004982AL1388991559427513RH505491589.40    1 AB045357.1, AL138899.23
S/G/Y/R/B/O NT_004982AL1388991559427513TIGR-A004X45    1695.501 AB045357.1, AL138899.23
S/G/Y/R/B/O NT_004982AL1388991559461733RH9030  16012.00  1 AB045357.1, AC025403.2, AL138899.23
S/G/Y/R/B/O NT_004982AL1388991559482063RH663231589.61    1 AB045357.1, AC025403.2, AL138899.23
S/G/Y/R/B/O NT_004982AL1219861560196943RH8623  18485.00  1 AB045357.1, AC025403.2, AL121986.12
S/G/Y/R/B/O NT_004982AL1219861560200833RH114381567.23    1 AB045357.1, AC025403.2, AL121986.12
S/G/Y/R/B/O NT_004982AL1219861560900053RH9049  16012.00  1 AB045358.1, AL121986.12
S/G/Y/R/B/O NT_004982AL1219861561185873RH708211568.66    1 AB045358.1, AL121986.12
S/G/Y/R/B/O NT_004982AL1219861561193393RH469831590.02    1 AB045358.1, AL121986.12
S/G/Y/R/B/O NT_004982AL3654401561843433          
S/G/Y/R/B/O NT_004982AL1602831563111973          
S/G/Y/R/B/O NT_004982AL3538941563728343RH637891568.36    1 AB045360.1, AL353894.14
S/G/Y/R/B/O NT_004982AL3538941563728343RH2083  16009.00  1 AB045360.1, AL353894.14
S/G/Y/R/B/O NT_004982AL3538941563732633RH684591568.56    1 AB045360.1, AL353894.14
S/G/Y/R/B/O NT_004982AL3538941563824613RH696351568.66    1 AB045360.1, AL353894.14
S/G/Y/R/B/O NT_004982AL3538941563846293RH651321569.25    1 AB045360.1, AL353894.14
S/G/Y/R/B/O NT_004982AL5132051566112373RH498911589.40  1707.701 AB045361.1, AL513205.8
S/G/Y/R/B/O NT_004982AL5132051566112373RH29344  16015.00  1 AB045361.1, AL513205.8
S/G/Y/R/B/O NT_004982AL5132051566112543RH177421570.57    1 AB045361.1, AL513205.8
S/G/Y/R/B/O NT_004982AL5132081566373143          
S/G/Y/R/B/O NT_004982AL3597531567659633WI-6674    1704.501 AL359753.9
S/G/Y/R/B/O NT_004982AL3597531567810563RH484301589.92    1 AB045363.1, AL359753.9
S/G/Y/R/B/O NT_004982AL3597531567870123RH1045151589.4016021.00  1 AB045363.1, AL359753.9
S/G/Y/R/B/O NT_004982AL3597531568169003RH115031570.57    1 AB045364.1, AL359753.9
S/G/Y/R/B/O NT_004982AL3597531568169083RH37786  16021.00  1 AB045364.1, AL359753.9
S/G/Y/R/B/O NT_004982AL4511341568692043AFMA323ZE5    1707.701 AB045364.1, AL451134.8
S/G/Y/R/B/O NT_004982AL0354031569588943RH123361570.57    1 AB045365.1, AL035403.10
S/G/Y/R/B/O NT_004982AL0354031569624393RH492781570.4716038.001712.401 AL035403.10
S/G/Y/R/B/O NT_004982AL0354031569630523RH753371589.40    1 AB045365.1, AL035403.10
S/G/Y/R/B/O NT_004982AL0354031569637103RH115581590.02    1 AB045365.1, AL035403.10
S/G/Y/R/B/O NT_004982AL0354031569637183RH105861570.57    1 AB045365.1, AL035403.10
S/G/Y/R/B/O NT_004982AL0354031569682323RH705261570.57    1 AB045365.1, AL035403.10
S/G/Y/R/B/O NT_004982AL0354031569682423RH499161589.40  1706.001 AB045365.1, AL035403.10
S/G/Y/R/B/O NT_004982AL5133231570699283RH503071589.3016034.001709.401 AB045365.1, AL513323.14
S/G/Y/R/B/O NT_004982AL6630231572027403RH759801574.55    1 AL663023.10
S/G/Y/R/B/O NT_004982AL6067521572606173          
S/G/Y/R/B/O NT_004982AL4455281573505173RH638921590.02    1 AC016787.3, AL359843.2, AL445528.16
S/G/Y/R/B/O NT_004982AL4455281573505803RH116391587.43    1 AC016787.3, AL359843.2, AL445528.16
S/G/Y/R/B/O NT_004982AL4455281573507043RH710721589.4016083.00  1 AC016787.3, AL359843.2, AL445528.16
S/G/Y/R/B/O NT_004982AL4455281573511583RH931851589.09    1 AC016787.3, AL359843.2, AL445528.16
S/G/Y/R/B/O NT_004982AL4455281573539573RH446791589.92    1 AC016787.3, AL445528.16
S/G/Y/R/B/O NT_004982AL4455281573606133RH453481587.74    1 AC016787.3, AL359843.2, AL445528.16
S/G/Y/R/B/O NT_004982AL4455281573613283RH448801589.61    1 AC016787.3, AL359843.2, AL445528.16
S/G/Y/R/B/O NT_004982AL4455281573641763RH675221587.74    1 AC016787.3, AL359843.2, AL445528.16
S/G/Y/R/B/O NT_004982AL4455281573642303RH456051574.66    1 AC016787.3, AL359843.2, AL445528.16
S/G/Y/R/B/O NT_004982AL4455281574742843RH638801587.74    1 AL359843.2, AL445528.16
S/G/Y/R/B/O NT_004982AL4455281574743353RH116411588.98    1 AL359843.2, AL445528.16
S/G/Y/R/B/O NT_004982AL4455281574743483RH116101574.66    1 AL359843.2, AL445528.16
S/G/Y/R/B/O NT_004982AL4455281574747193RH181091574.66    1 AL359843.2, AL445528.16


  NT_004982 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004982AL4455281574754863RH110651587.43    1 AL359843.2, AL445528.16
S/G/Y/R/B/O NT_004982AL5905601575856343WI-4746    1702.701 AL590560.9
S/G/Y/R/B/O NT_004982AL5905601575988563WI-11725    1709.901 AL590560.9
S/G/Y/R/B/O NT_004982AL5905601575988563RH637981590.02    1 AL590560.9
S/G/Y/R/B/O NT_004982AL5905601576258463RH703971575.02    1 AL590560.9
S/G/Y/R/B/O NT_004982AL5134851576803933RH2014  82425.00  1 AL357565.3, AL513485.10
S/G/Y/R/B/O NT_004982AL5134851577135873RH984611587.43    1 AL357565.3, AL513485.10
S/G/Y/R/B/O NT_004982AL5134851577406253RH940441589.30    1 AL357565.3, AL513485.10
S/G/Y/R/B/O NT_004982AL5134851577474493RH637841584.71  1702.701 AL357565.3, AL513485.10
S/G/Y/R/B/O NT_004982AL5133021577870083RH505921584.71  1709.901 AL357565.3, AL513302.15
S/G/Y/R/B/O NT_004982AL5133021577896703RH688911576.33    1 AL357565.3, AL513302.15
S/G/Y/R/B/O NT_004982AL5133021577919853RH687881576.12    1 AL357565.3, AL513302.15
S/G/Y/R/B/O NT_004982AL5133021577922283RH367181589.40    1 AL357565.3, AL513302.15
S/G/Y/R/B/O NT_004982AL5133021578002533RH638631576.43  1701.501 AL357565.3, AL513302.15
S/G/Y/R/B/O NT_004982AL5133021578003523RH118711584.71    1 AL357565.3, AL513302.15
S/G/Y/R/B/O NT_004982AL5133021578025703RH470091584.71    1 AL357565.3, AL513302.15
S/G/Y/R/B/O NT_004982AL5133021578028723RH677931576.12    1 AL357565.3, AL513302.15
S/G/Y/R/B/O NT_004982AL1219871578510681RH644821587.56    1 AL121987.32
S/G/Y/R/B/O NT_004982AL1219871578511441RH1288  16116.00  1 AL121987.32
S/G/Y/R/B/O NT_004982AL1219871578521981RH500771587.15  1706.101 AL121987.32
S/G/Y/R/B/O NT_004982AL1219871578533721RH642221587.64  1707.701 AL121987.32
S/G/Y/R/B/O NT_004982AL1219871578645291RH30694  16111.00  1 AL121987.32
S/G/Y/R/B/O NT_004982AL1219871578883411RH668831576.12    1 AL121987.32
S/G/Y/R/B/O NT_004982AL1219871579031811RH642981584.7116121.001710.901 AL121987.32
S/G/Y/R/B/O NT_004982AL1219871579041651RH500571584.71  1709.901 AL121987.32
S/G/Y/R/B/O NT_004982AL1219871579051231RH696451576.12    1 AL121987.32
S/G/Y/R/B/O NT_004982AL1219871579354211RH942431584.71    1 AL121987.32, AL359981.10
S/G/Y/R/B/O NT_004982AL1219871579631241RH646981584.71    1 AL121987.32, AL359981.10
S/G/Y/R/B/O NT_004982AL1219871579633641RH179121584.71    1 AL121987.32, AL359981.10
S/G/Y/R/B/O NT_004982AL1219871579634881RH796231587.64    1 AL121987.32, AL359981.10
S/G/Y/R/B/O NT_004982AL1390111579765833RH269501588.98    1 AL121987.32, AL139011.20, AL359981.10
S/G/Y/R/B/O NT_004982AL1390111579769573RH117971584.71    1 AL121987.32, AL139011.20, AL359981.10
S/G/Y/R/B/O NT_004982AL1390111579769923RH499671582.71  1710.001 AL121987.32, AL139011.20, AL359981.10
S/G/Y/R/B/O NT_004982AL1390111579775823RH14104  16126.00  1 AL139011.20, AL359981.10
S/G/Y/R/B/O NT_004982AL1390111579775853RH642791584.7116126.001709.901 AL121987.32, AL139011.20, AL359981.10
S/G/Y/R/B/O NT_004982AL1390111579777213RH705401576.12    1 AL139011.20, AL359981.10
S/G/Y/R/B/O NT_004982AL1390111579832753RH643401587.53  1709.901 AL139011.20, AL359981.10
S/G/Y/R/B/O NT_004982AL1390111580010833RH643601584.71  1703.601 AL139011.20, AL359981.10
S/G/Y/R/B/O NT_004982AL1390111580179083RH697361576.43    1 AL139011.20, AL359981.10
S/G/Y/R/B/O NT_004982AL5132821580386893RH497621584.71  1709.901 AL359981.10, AL513282.10
S/G/Y/R/B/O NT_004982AL5132821580387113RH709041576.12    1 AL359981.10, AL513282.10
S/G/Y/R/B/O NT_004982AL5132821580387383RH679261576.12    1 AL359981.10, AL513282.10
S/G/Y/R/B/O NT_004982AL5132821580403423RH498111584.71  1709.901 AL359981.10, AL513282.10
S/G/Y/R/B/O NT_004982AL5132821580513273RH249661584.71    1 AL359981.10, AL513282.10
S/G/Y/R/B/O NT_004982AL5132821580514673RH710631584.71  1707.901 AL359981.10, AL513282.10
S/G/Y/R/B/O NT_004982AL5132821580544603RH364331576.12    1 AL359981.10, AL513282.10
S/G/Y/R/B/O NT_004982AL5132821580584823RH478861589.09    1 AL359981.10, AL513282.10
S/G/Y/R/B/O NT_004982AL5132821580870063RH642661584.71  1709.901 AL359981.10, AL513282.10
S/G/Y/R/B/O NT_004982AL5132821580953133RH752061576.22    1 AL359981.10, AL513282.10
S/G/Y/R/B/O NT_004982AL4452301581037613RH361991589.09    1 AL138932.10, AL445230.11


  NT_004982 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004982AL4452301581205873RH713331584.71    1 AL138932.10, AL445230.11
S/G/Y/R/B/O NT_004982AL4452301581206073RH116341587.53    1 AL138932.10, AL445230.11
S/G/Y/R/B/O NT_004982AL4452301581344993RH939531584.71    1 AL138932.10, AL445230.11
S/G/Y/R/B/O NT_004982AL4452301581650553RH929301584.71    1 AL138932.10, AL445230.11
S/G/Y/R/B/O NT_004982AL1389301583700403RH480781578.06    1 AC012471.7, AC027082.3, AL138930.15, AL355996.3
S/G/Y/R/B/O NT_004982AL1389301583720753RH791451589.61    1 AC012471.7, AC027082.3, AL138930.15, AL355996.3
S/G/Y/R/B/O NT_004982AL1389301583722033RH180331579.89    1 AC012471.7, AC027082.3, AL138930.15, AL355996.3
S/G/Y/R/B/O NT_004982AL1389301583723983RH498971584.71  1706.001 AC012471.7, AC027082.3, AL138930.15, AL355996.3
S/G/Y/R/B/O NT_004982AL1219851583874893RH493671579.89    1 AC027082.3, AL121985.13
S/G/Y/R/B/O NT_004982AL1219851584471273RH455501584.81    1 AC027082.3, AL121985.13
S/G/Y/R/B/O NT_004982AL1219851585162493RH707631579.89    1 AC068728.7, AL121985.13
S/G/Y/R/B/O NT_004982AL1219851585593823RH136361581.6916126.00  1 AL121985.13
S/G/Y/R/B/O NT_004982AC0687281585890451RH761801587.53    1 AC068728.7, AL159984.5, AL354714.21
S/G/Y/R/B/O NT_004982AC0687281586072681WI-6137    1702.701 AC068728.7, AL354714.21
S/G/Y/R/B/O NT_004982 - RH1045101589.50    0 AL592295.17
S/G/Y/R/B/O NT_004982 - SGC34299    1701.401 AL162592.19, AL354714.21, AL591806.16
S/G/Y/R/B/O NT_004982 - RH107431579.99    1 AL590651.4, AL590714.27
S/G/Y/R/B/O NT_004982 - WI-4884    1701.400 AL354714.21
S/G/Y/R/B/O NT_004982 - RH691951576.12    1 AC021370.4, AC021370.4, AL359541.11
S/G/Y/R/B/O NT_004982 - WI-12338    1702.701 AL590651.4, AL591806.16
S/G/Y/R/B/O NT_004982 - RH114531576.12    1 AC021370.4, AL590385.22
S/G/Y/R/B/O NT_004982 - RH182131579.79    1 AL162592.19, AL354714.21, AL591806.16
S/G/Y/R/B/O NT_004982 - RH360211577.96    1 AL162592.19, AL591806.16
S/G/Y/R/B/O NT_004982 - RH419421584.61    0  
S/G/Y/R/B/O NT_004982 - RH459451589.40    1 AL138900.12
S/G/Y/R/B/O NT_004982 - RH493221584.91    0 AL354714.21
S/G/Y/R/B/O NT_004982 - RH497331581.83    1 AL162592.19, AL354714.21, AL591806.16
S/G/Y/R/B/O NT_004982 - RH639021576.12    1 AC021370.4, AL590385.22, AL831711.1
S/G/Y/R/B/O NT_004982 - RH668771579.89    1 AL591806.16
S/G/Y/R/B/O NT_004982 - RH672671578.06    1 AL592295.17
S/G/Y/R/B/O NT_004982 - RH677261579.79    1 AL590651.4, AL590714.27
S/G/Y/R/B/O NT_004982 - RH687681576.12    1 AL391825.15
S/G/Y/R/B/O NT_004982 - RH689361576.06    1 AC027205.2, AC040901.3, AL359699.12
S/G/Y/R/B/O NT_004982 - RH691211589.09    0  
S/G/Y/R/B/O NT_004982 - RH692351576.12    1 AL359541.11
S/G/Y/R/B/O NT_004982 - RH694741576.02    1 AL359541.11
S/G/Y/R/B/O NT_004982 - RH695851576.33    1 AL391825.15
S/G/Y/R/B/O NT_004982 - RH698121577.37    1 AL391825.15
S/G/Y/R/B/O NT_004982 - RH703041581.83    1 AL590651.4, AL590714.27
S/G/Y/R/B/O NT_004982 - RH708261576.12    1 AC021370.4, AL590385.22
S/G/Y/R/B/O NT_004982 - RH709801579.79    1 AL590651.4, AL590714.27
S/G/Y/R/B/O NT_004982 - RH710811579.79    1 AL162592.19, AL354714.21, AL591806.16