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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_004350 NT_004321 NT_004547 NT_034374 NT_022058 NT_021917 NT_028054 NT_032967
NT_021937 NT_034375 NT_022041 NT_004873 NT_034376 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_034377 NT_030571 NT_004782 NT_028053 NT_034378
NT_004538 NT_034379 NT_034380 NT_004511 NT_004852 NT_032963 NT_032971 NT_032972
NT_004386 NT_032977 NT_004424 NT_032973 NT_029223 NT_029865 NT_031737 NT_004636
NT_034381 NT_032948 NT_034382 NT_004464 NT_034383 NT_034384 NT_004483 NT_032974
NT_004902 NT_034385 NT_026943 NT_034386 NT_029231 NT_034387 NT_004658 NT_004686
NT_034388 NT_021979 NT_034389 NT_034390 NT_034391 NT_030565 NT_034392 NT_034393
NT_028050 NT_030567 NT_034394 NT_021977 NT_034395 NT_029860 NT_019273 NT_034396
NT_031697 NT_004754 NT_032975 NT_022052 NT_034397 NT_022071 NT_004434 NT_034398
NT_034399 NT_034400 NT_034401 NT_034402 NT_034403 NT_032962 NT_034428 NT_021907
NT_004441 NT_030577 NT_004858 NT_004982 NT_026945 NT_004668 NT_034404 NT_034405
NT_029874 NT_034406 NT_004487 NT_021905 NT_004599 NT_034407 NT_004671 NT_004416
NT_029862 NT_034408 NT_034409 NT_034410 NT_034411 NT_032947 NT_029226 NT_021877
NT_031718 NT_034412 NT_034413 NT_004612 NT_034414 NT_034415 NT_021953 NT_004861
NT_004525 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433 NT_034416
NT_030561 NT_034417 NT_004836 NT_004771 NT_004734 NT_031700 NT_004536 NT_032964
NT_031730 NT_029870 NT_032969 NT_032968 NT_034418


  NT_004610
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004610AL031730196397453RH69267172.85    1 AL031730.1, AL391598.3
S/G/Y/R/B/O NT_004610AL391883196806033          
S/G/Y/R/B/O NT_004610AL358253198090731RH50559174.17  166.501 AL358253.11, AL360079.3
S/G/Y/R/B/O NT_004610AL358253198723931RH76103164.37    1 AL358253.11, AL360079.3
S/G/Y/R/B/O NT_004610AL645485199032213          
S/G/Y/R/B/O NT_004610AL158172199875383RH50628172.75  166.501 AL158172.5
S/G/Y/R/B/O NT_004610AL158172199877213RH17974172.75    1 AL158172.5
S/G/Y/R/B/O NT_004610Z98257200807353RH49226175.3811197.00  1 Z98257.1
S/G/Y/R/B/O NT_004610Z98257200811713RH98493174.02    1 Z98257.1
S/G/Y/R/B/O NT_004610Z98257200884263RH91975174.02    1 Z98257.1
S/G/Y/R/B/O NT_004610Z98257200909453RH48163175.38    1 Z98257.1
S/G/Y/R/B/O NT_004610Z98257201767463RH64426175.3811191.00168.201 Z98257.1
S/G/Y/R/B/O NT_004610AL020998202066613RH42719175.3811209.00  1 AL020998.1
S/G/Y/R/B/O NT_004610AL139254202698092RH64205175.38  168.201 AL139254.18
S/G/Y/R/B/O NT_004610AL139254203069312WI-5834    168.201 AL139254.18
S/G/Y/R/B/O NT_004610AL391357203792863RH50798175.38  168.201 AC025224.3, AL139254.18, AL356300.5, AL391357.20
S/G/Y/R/B/O NT_004610AL391357203796623RH77967178.38    1 AC025224.3, AL139254.18, AL391357.20
S/G/Y/R/B/O NT_004610AL391357203798303RH37796  11214.00  1 AL139254.18, AL356300.5, AL391357.20
S/G/Y/R/B/O NT_004610AL391357203799903RH64754175.38    1 AC025224.3, AL139254.18, AL356300.5, AL391357.20
S/G/Y/R/B/O NT_004610AL391357203803143WI-13126    176.201  
S/G/Y/R/B/O NT_004610AL391357203963263RH14648  11181.00168.201 AL356300.5, AL391357.20
S/G/Y/R/B/O NT_004610AL391357203963583RH9872174.02    1 AL356300.5, AL391357.20
S/G/Y/R/B/O NT_004610AL391357203972813RH25460175.38    1 AC025224.3, AL356300.5, AL391357.20
S/G/Y/R/B/O NT_004610AL391357204532123D1S1571    168.201 AL356300.5
S/G/Y/R/B/O NT_004610AL391357204866783RH45464183.70    1 AC025224.3, AL356300.5, AL365439.9, AL391357.20
S/G/Y/R/B/O NT_004610AL138784205473103RH50030175.38  168.201 AC022786.3, AL138784.30, AL353647.5, AL365439.9, AL391357.20
S/G/Y/R/B/O NT_004610AL138784205473933RH12430175.38    1 AL138784.30, AL353647.5, AL365439.9, AL391357.20
S/G/Y/R/B/O NT_004610AL138784205477943RH50088175.3811257.00168.201 AL138784.30, AL353647.5
S/G/Y/R/B/O NT_004610AL138784205478903RH64541175.38    1 AL138784.30, AL353647.5, AL365439.9, AL391357.20
S/G/Y/R/B/O NT_004610AL138784205479463RH8609  11250.00  1 AC022786.3, AL138784.30, AL353647.5, AL365439.9, AL391357.20
S/G/Y/R/B/O NT_004610AL138784205479793RH91506174.02    1 AL138784.30, AL353647.5, AL365439.9, AL391357.20
S/G/Y/R/B/O NT_004610AL138784205480513RH10614174.02    1 AL138784.30, AL353647.5
S/G/Y/R/B/O NT_004610AL138784205490683RH64786175.3811257.00  1 AC022786.3, AL138784.30, AL353647.5, AL365439.9, AL391357.20
S/G/Y/R/B/O NT_004610AL138784205491343RH68262174.02    1 AL138784.30, AL353647.5, AL365439.9, AL391357.20
S/G/Y/R/B/O NT_004610AL138784205608933RH36812175.38    1 AC022786.3, AL138784.30, AL353647.5, AL365439.9, AL391357.20
S/G/Y/R/B/O NT_004610AL138784206166363RH27029175.38    1 AC022786.3, AL138784.30, AL353647.5, AL365439.9, AL663074.13
S/G/Y/R/B/O NT_004610AL138784206166473RH45524174.02    1 AL138784.30, AL353647.5, AL365439.9, AL663074.13
S/G/Y/R/B/O NT_004610AL138784206400143RH11743175.38    1 AC022786.3, AL138784.30, AL353647.5, AL663074.13
S/G/Y/R/B/O NT_004610AL138784206725493RH64446177.7711244.00168.201 AC022786.3, AL138784.30, AL353647.5, AL606477.11
S/G/Y/R/B/O NT_004610AL606477207033703RH47321175.38    1 AL606477.11
S/G/Y/R/B/O NT_004610AL606477207039043RH45083177.27    1 AL606477.11
S/G/Y/R/B/O NT_004610AL606477207831313RH65697175.38    1 AL606477.11
S/G/Y/R/B/O NT_004610AL358392208087253RH50895175.38  168.201 AL358392.19
S/G/Y/R/B/O NT_004610AL358392208239493RH48482175.38    1 AL358392.19
S/G/Y/R/B/O NT_004610AL627311209017033RH76416178.18    1 AL627311.16
S/G/Y/R/B/O NT_004610AL627311209832573RH49869175.38  168.201 AL627311.16
S/G/Y/R/B/O NT_004610AL627311210089933RH11036174.02    1 AL627311.16
S/G/Y/R/B/O NT_004610AL627311210288273RH45561175.38    1 AL627311.16
S/G/Y/R/B/O NT_004610AL672037210353183          
S/G/Y/R/B/O NT_004610AL031005211141523RH91799175.38    1 AL031005.2


  NT_004610 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004610AL031005211141723RH26456174.58    1 AL031005.2
S/G/Y/R/B/O NT_004610AL031005211164253RH50752175.38  168.201 AL031005.2
S/G/Y/R/B/O NT_004610AL031005211164253RH32078  11421.00  1 AL031005.2
S/G/Y/R/B/O NT_004610AL031005211165133RH11429174.02    1 AL031005.2
S/G/Y/R/B/O NT_004610AL031005211699963RH49172178.14  169.601 AL031005.2
S/G/Y/R/B/O NT_004610AL031728211788003          
S/G/Y/R/B/O NT_004610AL365182212527372          
S/G/Y/R/B/O NT_004610AL592309213629613RH68104164.58    3 AL354666.5, AL356581.4, AL391068.7, AL590643.7, AL592309.24, AL713858.4
S/G/Y/R/B/O NT_004610AL592309213632243RH104463164.58    3  
S/G/Y/R/B/O NT_004610AL592309214569443RH11134176.39    1 AC026565.3, AL357252.10, AL592309.24
S/G/Y/R/B/O NT_004610AL592309214723373RH11080176.39    1 AC026565.3, AL162262.9, AL357252.10, AL359815.26, AL391000.6, AL592309.24
S/G/Y/R/B/O NT_004610AL592309214747513RH93776176.37    1 AL357252.10, AL359815.26, AL391000.6, AL592309.24
S/G/Y/R/B/O NT_004610AL592309214928333RH47488179.87    1 AC023093.2, AC026565.3, AL357252.10, AL359815.26, AL592309.24
S/G/Y/R/B/O NT_004610AL592309214929233RH69163174.12    1 AC023093.2, AL357252.10, AL359815.26, AL592309.24
S/G/Y/R/B/O NT_004610AL592309214929343RH93937177.72    1 AC023093.2, AL357252.10, AL359815.26, AL592309.24
S/G/Y/R/B/O NT_004610AL359815215751193RH75105177.06    1 AC023093.2, AL359815.26
S/G/Y/R/B/O NT_004610AL590103216229683RH64780176.37    1 AC023093.2, AL590103.12
S/G/Y/R/B/O NT_004610AL590103216245053RH94323176.37    1 AC023093.2, AL590103.12
S/G/Y/R/B/O NT_004610AL590103216304233RH16562176.37    1 AC023093.2, AL590103.12
S/G/Y/R/B/O NT_004610AL590103216373003RH26604177.31    1 AC023093.2, AL590103.12
S/G/Y/R/B/O NT_004610AL590103217188953RH79675177.06    1 AC020565.4, AL590103.12
S/G/Y/R/B/O NT_004610AL590103217196903RH76252173.62    1 AC020565.4, AL590103.12
S/G/Y/R/B/O NT_004610AL590103217695123RH48239177.72    1 AC020565.4, AL590103.12, AL590556.18
S/G/Y/R/B/O NT_004610AL590556218375571RH71429177.56    2 AL590556.18, AL590556.18
S/G/Y/R/B/O NT_004610AL590556218744231WI-3056    169.601 AL590556.18
S/G/Y/R/B/O NT_004610AL590556219057371RH69088177.56    1 AL590556.18
S/G/Y/R/B/O NT_004610AL590556219085191RH71429177.56    2 AL590556.18, AL590556.18
S/G/Y/R/B/O NT_004610AL031281219271103RH68383177.56    1 AL031281.6, AL590556.18
S/G/Y/R/B/O NT_004610AL031281219847543RH67516177.56    1 AL031281.6
S/G/Y/R/B/O NT_004610AL031281219861483RH50836177.56  172.401 AL031281.6
S/G/Y/R/B/O NT_004610AL031281219861893RH69132177.56    1 AL031281.6
S/G/Y/R/B/O NT_004610AL031281219865793RH49921177.56  172.301 AL031281.6
S/G/Y/R/B/O NT_004610AL031281220133903RH69949177.56    1 AL031281.6
S/G/Y/R/B/O NT_004610AL031281220256913RH64228177.56  172.301 AL031281.6
S/G/Y/R/B/O NT_004610AL445253220379663          
S/G/Y/R/B/O NT_004610AL031279220717243WI-3177    171.001 AL031279.1
S/G/Y/R/B/O NT_004610AL591122221870233          
S/G/Y/R/B/O NT_004610AL358788222916743          
S/G/Y/R/B/O NT_004610AL035703223953253WI-5581    174.701 AC025929.3, AL035703.21
S/G/Y/R/B/O NT_004610AL035703224238593RH80410178.34    1 AC025929.3, AL035703.21
S/G/Y/R/B/O NT_004610AL035703224242783RH12833180.99    1 AC025929.3, AL035703.21
S/G/Y/R/B/O NT_004610AL035703224268173RH102585180.77    1 AC025929.3, AL035703.21
S/G/Y/R/B/O NT_004610AL035703224424013RH49239179.87    1 AC025929.3, AL035703.21
S/G/Y/R/B/O NT_004610AL035703224424013RH30659  11410.00  1 AC025929.3, AL035703.21
S/G/Y/R/B/O NT_004610AL035703224492663RH48518179.87    1 AC025929.3, AL035703.21
S/G/Y/R/B/O NT_004610AL035703224810003RH420  11279.00  1 AC025929.3, AL035703.21
S/G/Y/R/B/O NT_004610AL158086225353532RH63879179.87  176.601 AC025929.3, AL158086.25
S/G/Y/R/B/O NT_004610AL158086225354182RH1962  11272.00  1 AC025929.3, AL158086.25
S/G/Y/R/B/O NT_004610AL611946225434191RH70348181.09    1 AC013611.3, AC025929.3, AL158086.25, AL611946.13
S/G/Y/R/B/O NT_004610AL611946225439021RH12869181.29    1 AC013611.3, AC025929.3, AL158086.25, AL611946.13


  NT_004610 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004610AL611946225568671RH45415179.87    1 AC013611.3, AC025929.3, AL158086.25, AL611946.13, AL611946.13
S/G/Y/R/B/O NT_004610AL611946225570581RH50706179.87  176.601 AC013611.3, AC025929.3, AL158086.25, AL611946.13, AL611946.13
S/G/Y/R/B/O NT_004610AL611946225572121RH70806179.87    1 AC013611.3, AC025929.3, AL158086.25, AL611946.13, AL611946.13
S/G/Y/R/B/O NT_004610AL611946225574231RH78269179.87    1 AC013611.3, AC025929.3, AL158086.25, AL611946.13, AL611946.13
S/G/Y/R/B/O NT_004610AL512444226520963          
S/G/Y/R/B/O NT_004610AL035704228101393RH64763179.87    1 AC067727.7, AL035704.9, AL157403.3
S/G/Y/R/B/O NT_004610AL035704228101393RH2012  11419.00  1 AC067727.7, AL035704.9, AL157403.3
S/G/Y/R/B/O NT_004610AL035704228177643RH103954179.87    1 AC067727.7, AL035704.9, AL157403.3
S/G/Y/R/B/O NT_004610AL035704228387803RH31555  11423.00  1 AL035704.9, AL157403.3
S/G/Y/R/B/O NT_004610AL355534228906393          
S/G/Y/R/B/O NT_004610AL031428229152623RH98397185.31    1 AC068311.3, AL031428.9
S/G/Y/R/B/O NT_004610AL031428229347063AFMA129ZB5    178.201 AC068311.3, AL031428.9
S/G/Y/R/B/O NT_004610AL031428229736203SGC33968    178.301 AC068311.3, AL031428.9, AL831787.1
S/G/Y/R/B/O NT_004610AL031428229736203RH50096181.29    1 AC068311.3, AL031428.9, AL831787.1
S/G/Y/R/B/O NT_004610AL031428229736203RH33033  11432.00  1 AC068311.3, AL031428.9, AL831787.1
S/G/Y/R/B/O NT_004610AL031428229736203RH69757180.77    1 AC068311.3, AL031428.9, AL831787.1
S/G/Y/R/B/O NT_004610AL031428229749283RH68600180.77    1 AL031428.9, AL831787.1
S/G/Y/R/B/O NT_004610AL031428229802333RH48726181.09    1 AC068311.3, AL031428.9, AL831787.1
S/G/Y/R/B/O NT_004610AL031428229806053SGC33933    178.201 AC068311.3, AL031428.9, AL831787.1
S/G/Y/R/B/O NT_004610AL031428229806053RH50162181.29    1 AC068311.3, AL031428.9, AL831787.1
S/G/Y/R/B/O NT_004610AL031428229806053RH33023  11436.00  1 AC068311.3, AL031428.9, AL831787.1
S/G/Y/R/B/O NT_004610AL031428229806893RH16407181.29    1 AC068311.3, AL031428.9, AL831787.1
S/G/Y/R/B/O NT_004610AL031428229815333RH48715179.87    1 AL031428.9, AL831787.1
S/G/Y/R/B/O NT_004610AL031428229815343RH64566179.87    1 AC068311.3, AL031428.9, AL831787.1
S/G/Y/R/B/O NT_004610AL031428230070713D1S458    178.201 AL031428.9, AL831787.1
S/G/Y/R/B/O NT_004610AL161672230089763          
S/G/Y/R/B/O NT_004610AL049576230885783RH98554179.87    1 AL049576.19, AL445206.2
S/G/Y/R/B/O NT_004610AL049576230899953RH64537179.87    1 AL049576.19, AL445206.2
S/G/Y/R/B/O NT_004610AL353585231098343          
S/G/Y/R/B/O NT_004610 - RH102751179.87    0 AL109936.10, AL445206.2, AP001456.2
S/G/Y/R/B/O NT_004610 - SGC35351    169.501 AC026942.2, AL136529.14, AL358795.8, AL359492.3
S/G/Y/R/B/O NT_004610 - RH16441175.38    0  
S/G/Y/R/B/O NT_004610 - WI-13118    169.501 AC026942.2, AL358593.22
S/G/Y/R/B/O NT_004610 - RH26075178.48    1 AC026942.2, AL358593.22
S/G/Y/R/B/O NT_004610 - CHLC.GAAT4D10    169.501 AC026942.2, AL136529.14, AL359492.3
S/G/Y/R/B/O NT_004610 - RH44960178.48    1 AL031727.43, AP003160.1
S/G/Y/R/B/O NT_004610 - WI-16678    172.501 AC026942.2, AL136529.14, AL358795.8, AL359492.3
S/G/Y/R/B/O NT_004610 - RH91577177.21    0  
S/G/Y/R/B/O NT_004610 - WI-13057    173.201 AC068430.2, AL356101.10
S/G/Y/R/B/O NT_004610 - RH93292179.87    0  
S/G/Y/R/B/O NT_004610 - RH93521177.56    0