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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_004350 NT_004321 NT_004547 NT_034374 NT_022058 NT_021917 NT_028054 NT_032967
NT_021937 NT_034375 NT_022041 NT_004873 NT_034376 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_034377 NT_030571 NT_004782 NT_028053 NT_034378
NT_004538 NT_034379 NT_034380 NT_004511 NT_004852 NT_032963 NT_032971 NT_032972
NT_004386 NT_032977 NT_004424 NT_032973 NT_029223 NT_029865 NT_031737 NT_004636
NT_034381 NT_032948 NT_034382 NT_004464 NT_034383 NT_034384 NT_004483 NT_032974
NT_004902 NT_034385 NT_026943 NT_034386 NT_029231 NT_034387 NT_004658 NT_004686
NT_034388 NT_021979 NT_034389 NT_034390 NT_034391 NT_030565 NT_034392 NT_034393
NT_028050 NT_030567 NT_034394 NT_021977 NT_034395 NT_029860 NT_019273 NT_034396
NT_031697 NT_004754 NT_032975 NT_022052 NT_034397 NT_022071 NT_004434 NT_034398
NT_034399 NT_034400 NT_034401 NT_034402 NT_034403 NT_032962 NT_034428 NT_021907
NT_004441 NT_030577 NT_004858 NT_004982 NT_026945 NT_004668 NT_034404 NT_034405
NT_029874 NT_034406 NT_004487 NT_021905 NT_004599 NT_034407 NT_004671 NT_004416
NT_029862 NT_034408 NT_034409 NT_034410 NT_034411 NT_032947 NT_029226 NT_021877
NT_031718 NT_034412 NT_034413 NT_004612 NT_034414 NT_034415 NT_021953 NT_004861
NT_004525 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433 NT_034416
NT_030561 NT_034417 NT_004836 NT_004771 NT_004734 NT_031700 NT_004536 NT_032964
NT_031730 NT_029870 NT_032969 NT_032968 NT_034418


  NT_021979
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_021979AC104456933493611RH30682  14467.00  1 AC104456.2
S/G/Y/R/B/O NT_021979AC104456934421221RH916801266.07    1 AC104456.2
S/G/Y/R/B/O NT_021979AC104456934428971RH108821258.10    1 AC104456.2
S/G/Y/R/B/O NT_021979AC104456934435091RH674611257.88    1 AC104456.2
S/G/Y/R/B/O NT_021979AC104456934435171RH646011263.79    1 AC104456.2
S/G/Y/R/B/O NT_021979AC104456934458621RH647981258.52    1 AC104456.2
S/G/Y/R/B/O NT_021979AC104332935757923RH505261265.65  1269.101 AC004662.1, AC104332.2, AL133332.12
S/G/Y/R/B/O NT_021979AC104332936043633RH272028400.14    2 AC004662.1, AC024371.4, AC084697.2, AC104332.2, AL133332.12
S/G/Y/R/B/O NT_021979AC104332936156763RH492061261.25    1 AC004662.1, AC104332.2, AL133332.12
S/G/Y/R/B/O NT_021979AL133332936639873WI-5213    1265.201 AC004662.1, AL133332.12
S/G/Y/R/B/O NT_021979AL162740937048313RH505521262.86  1272.101 AL162740.13
S/G/Y/R/B/O NT_021979AL162740937118593RH109251257.67    1 AL162740.13
S/G/Y/R/B/O NT_021979AL162740937119403RH664401261.25    1 AL162740.13
S/G/Y/R/B/O NT_021979AL162740937133993RH169031257.88    1 AL162740.13
S/G/Y/R/B/O NT_021979AL162740937345103RH1032471259.64    1 AL162740.13
S/G/Y/R/B/O NT_021979AL162740937720993RH697631258.10    1 AL162740.13
S/G/Y/R/B/O NT_021979AL449283937765743          
S/G/Y/R/B/O NT_021979AC093577939536653RH123441262.95    1 AC093577.2, AL117354.12, AL512269.10
S/G/Y/R/B/O NT_021979AC093577939932243RH363791263.18    1 AC013663.2, AC093577.2, AC126124.1, AL117354.12, AL512269.10
S/G/Y/R/B/O NT_021979AL117354940092033RH645851263.27    1 AC126124.1, AL117354.12, AL512269.10
S/G/Y/R/B/O NT_021979AL117354940099023RH185301258.10    1 AL117354.12, AL512269.10
S/G/Y/R/B/O NT_021979AL117354940230793RH501891262.86  1272.101 AC126124.1, AL117354.12, AL512269.10
S/G/Y/R/B/O NT_021979AL117354940230843RH1286  14485.00  1 AC126124.1, AL117354.12, AL512269.10
S/G/Y/R/B/O NT_021979AL117354940231723RH645041264.00    1 AC126124.1, AL117354.12, AL512269.10
S/G/Y/R/B/O NT_021979AL117354940232753RH1364  14481.00  1 AC126124.1, AL117354.12, AL512269.10
S/G/Y/R/B/O NT_021979AL117354940255393RH661801268.47    1 AC126124.1, AL117354.12, AL512269.10
S/G/Y/R/B/O NT_021979AL117354940274543RH166851258.10    1 AC126124.1, AL117354.12, AL512269.10
S/G/Y/R/B/O NT_021979AL117354940274543RH684021258.10    1 AC126124.1, AL117354.12, AL512269.10
S/G/Y/R/B/O NT_021979AL355822940379671          
S/G/Y/R/B/O NT_021979AL139421941060703RH31586  14489.00  1 AC126124.1
S/G/Y/R/B/O NT_021979AL137159942036503RH992071263.67    1 AL137159.7
S/G/Y/R/B/O NT_021979AL137159942378303RH457171259.43    1 AC009719.2, AC095034.2, AL137159.7
S/G/Y/R/B/O NT_021979AL137159942395883RH809191264.50    1 AC009719.2, AC095034.2, AL137159.7
S/G/Y/R/B/O NT_021979AL137159942396313RH418841263.67    1 AC009719.2, AC095034.2, AL137159.7
S/G/Y/R/B/O NT_021979AC095034942707133          
S/G/Y/R/B/O NT_021979AL512651944000083          
S/G/Y/R/B/O NT_021979AL109613944236313RH645931267.01    1 AC022939.2, AL109613.11, AL359820.8
S/G/Y/R/B/O NT_021979AL109613944239323RH756911265.35    1 AC022939.2, AL109613.11, AL359820.8
S/G/Y/R/B/O NT_021979AL109613944254663RH498311265.65  1270.801 AC022939.2, AL109613.11, AL359820.8
S/G/Y/R/B/O NT_021979AL109613944330923RH118261264.40    1 AC022939.2, AL109613.11, AL359820.8
S/G/Y/R/B/O NT_021979AL109613944331993RH106251267.77    1 AC022939.2, AL109613.11, AL359820.8
S/G/Y/R/B/O NT_021979AL109613944524353RH456641264.30    1 AC055786.2, AL109613.11, AL359820.8
S/G/Y/R/B/O NT_021979AL109613944535473RH646111264.40    1 AC055786.2, AL109613.11, AL359820.8
S/G/Y/R/B/O NT_021979AL109613944535653RH646091257.67    1 AC055786.2, AL109613.11, AL359820.8
S/G/Y/R/B/O NT_021979AL109613944675853RH644041266.69  1272.101 AL109613.11
S/G/Y/R/B/O NT_021979AL109613944727273RH642671264.30  1272.101 AC055786.2, AL109613.11, AL359820.8
S/G/Y/R/B/O NT_021979AL109613944747623RH498271258.0214533.001272.801 AC055786.2, AL109613.11
S/G/Y/R/B/O NT_021979AL109613944750023RH182301264.40    1 AC055786.2, AL109613.11, AL359820.8
S/G/Y/R/B/O NT_021979AL109613944862743RH684821257.67    1 AL109613.11, AL359820.8
S/G/Y/R/B/O NT_021979AL359820945434071          


  NT_021979 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_021979AL512488946133983          
S/G/Y/R/B/O NT_021979AL049796946480233RH488831264.30    1 AL049796.28
S/G/Y/R/B/O NT_021979AL049796947210643RH643621265.14  1272.101 AL049796.28
S/G/Y/R/B/O NT_021979AL049796947557003RH637871264.4014548.00  1 AL049796.28
S/G/Y/R/B/O NT_021979AL049796947558983RH690461266.47    1 AL049796.28
S/G/Y/R/B/O NT_021979AL117351948304163WI-3099    1267.401 AL117351.12
S/G/Y/R/B/O NT_021979AC105278948505781          
S/G/Y/R/B/O NT_021979AC093579948721543RH507351265.97  1272.301 AC093579.2, AC105278.2
S/G/Y/R/B/O NT_021979AC093579948721543RH14631  14548.00  1 AC093579.2, AC105278.2
S/G/Y/R/B/O NT_021979AC093579948861703RH642921267.4414552.001273.401 AC093579.2, AC105278.2
S/G/Y/R/B/O NT_021979AC093579949124643RH642951267.3314577.001272.301 AC093579.2, AC105278.2
S/G/Y/R/B/O NT_021979AC093579950120153RH927841267.23    1 AC093579.2
S/G/Y/R/B/O NT_021979AC093579950150173RH800761268.20    1 AC093579.2
S/G/Y/R/B/O NT_021979AL162735950398393RH479711268.30    1 AL162735.41
S/G/Y/R/B/O NT_021979AL162735950402383RH106471266.07    1 AL162735.41
S/G/Y/R/B/O NT_021979AL162735950411463RH646711265.97    1 AL162735.41
S/G/Y/R/B/O NT_021979AL162735950412003RH646461265.97    1 AL162735.41
S/G/Y/R/B/O NT_021979AL162735950413423RH646571267.23    1 AL162735.41
S/G/Y/R/B/O NT_021979AL162735950417623RH480731268.41    1 AL162735.41
S/G/Y/R/B/O NT_021979AL162735950447323RH502211266.5014572.001273.401 AL162735.41
S/G/Y/R/B/O NT_021979AL162735950657823RH766071267.98    1 AL162735.41
S/G/Y/R/B/O NT_021979AL162735950659463RH674261265.97    1 AL162735.41
S/G/Y/R/B/O NT_021979AC097059952015763RH756811268.05    1 AC097059.2
S/G/Y/R/B/O NT_021979AC097059952118913RH21611267.44  1276.801 AC097059.2
S/G/Y/R/B/O NT_021979AC097059952118913RH244  14561.00  1 AC097059.2
S/G/Y/R/B/O NT_021979AC118469953381293RH701921266.07    1 AC118469.2, AL139157.10
S/G/Y/R/B/O NT_021979AL138758953845133RH117221266.25    1 AC093117.2, AL138758.7, AL139157.10, AL390314.7
S/G/Y/R/B/O NT_021979AL138758953851543RH285531266.18    1 AC093117.2, AL138758.7, AL139157.10
S/G/Y/R/B/O NT_021979AL138758953852863RH8833  14593.00  1 AC093117.2, AL138758.7, AL139157.10
S/G/Y/R/B/O NT_021979AL138758953957253RH689611266.29    1 AC093117.2, AL138758.7, AL139157.10, AL390314.7
S/G/Y/R/B/O NT_021979AL138758953963583RH642961265.97  1272.301 AC093117.2, AL390314.7
S/G/Y/R/B/O NT_021979AC093117954834843RH983701267.12    1 AC093117.2, AC124299.1, AC124299.1, AC124299.1, AL390314.7
S/G/Y/R/B/O NT_021979AC093117954927063RH639111269.06  1272.201 AC093117.2, AL390314.7
S/G/Y/R/B/O NT_021979AC093117955399683RH1044091269.01    1 AC025122.3, AC093117.2, AL390314.7
S/G/Y/R/B/O NT_021979AL391555955801573          
S/G/Y/R/B/O NT_021979AC093429956467193RH153531269.93    1 AC025122.3, AC093429.2
S/G/Y/R/B/O NT_021979AC093429956613703RH14247  14610.00  1 AC093429.2
S/G/Y/R/B/O NT_021979AC093429956613703RH648021270.37    1 AC093429.2
S/G/Y/R/B/O NT_021979AC093429957639753WI-13351    1281.601 AC093429.2, AL157708.4, AL359554.7
S/G/Y/R/B/O NT_021979AC093429957639753RH643371270.37    1 AC093429.2, AL157708.4, AL359554.7
S/G/Y/R/B/O NT_021979AC093429957645803RH647531272.21    1 AC093429.2, AL157708.4, AL359554.7
S/G/Y/R/B/O NT_021979AL359554957957513RH184181271.78    1 AC105942.2, AL157708.4, AL359554.7
S/G/Y/R/B/O NT_021979AL359554957972773RH124481272.96    1 AC105942.2, AL157708.4, AL359554.7
S/G/Y/R/B/O NT_021979AL359554957973863RH668881269.93    1 AC105942.2, AL157708.4, AL359554.7
S/G/Y/R/B/O NT_021979AL359554957974013WI-13095    1281.501 AC105942.2, AL157708.4, AL359554.7
S/G/Y/R/B/O NT_021979AL359554957974013RH501741270.37    1 AC105942.2, AL157708.4, AL359554.7
S/G/Y/R/B/O NT_021979AC105942958129083          
S/G/Y/R/B/O NT_021979 - RH1045501259.64    0  
S/G/Y/R/B/O NT_021979 - RH1227  14474.00  1 AC026021.4, AL049569.13
S/G/Y/R/B/O NT_021979 - WI-9944    1264.401 AL138780.3


  NT_021979 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_021979 - RH250981263.37    1 AC099334.2
S/G/Y/R/B/O NT_021979 - RH32459  14602.00  1 AC026021.4, AL049569.13
S/G/Y/R/B/O NT_021979 - WI-5518    1270.801 AC022907.3, AL627442.10
S/G/Y/R/B/O NT_021979 - RH638191259.64    0  
S/G/Y/R/B/O NT_021979 - RH642901263.67  1272.701 AC095037.1, AL451010.4
S/G/Y/R/B/O NT_021979 - RH507011265.25    1 AC024195.2, AL162263.9, AL590555.3
S/G/Y/R/B/O NT_021979 - RH666471265.14    0  
S/G/Y/R/B/O NT_021979 - RH808891269.16    1 AL356457.25