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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_004350 NT_004321 NT_004547 NT_034374 NT_022058 NT_021917 NT_028054 NT_032967
NT_021937 NT_034375 NT_022041 NT_004873 NT_034376 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_034377 NT_030571 NT_004782 NT_028053 NT_034378
NT_004538 NT_034379 NT_034380 NT_004511 NT_004852 NT_032963 NT_032971 NT_032972
NT_004386 NT_032977 NT_004424 NT_032973 NT_029223 NT_029865 NT_031737 NT_004636
NT_034381 NT_032948 NT_034382 NT_004464 NT_034383 NT_034384 NT_004483 NT_032974
NT_004902 NT_034385 NT_026943 NT_034386 NT_029231 NT_034387 NT_004658 NT_004686
NT_034388 NT_021979 NT_034389 NT_034390 NT_034391 NT_030565 NT_034392 NT_034393
NT_028050 NT_030567 NT_034394 NT_021977 NT_034395 NT_029860 NT_019273 NT_034396
NT_031697 NT_004754 NT_032975 NT_022052 NT_034397 NT_022071 NT_004434 NT_034398
NT_034399 NT_034400 NT_034401 NT_034402 NT_034403 NT_032962 NT_034428 NT_021907
NT_004441 NT_030577 NT_004858 NT_004982 NT_026945 NT_004668 NT_034404 NT_034405
NT_029874 NT_034406 NT_004487 NT_021905 NT_004599 NT_034407 NT_004671 NT_004416
NT_029862 NT_034408 NT_034409 NT_034410 NT_034411 NT_032947 NT_029226 NT_021877
NT_031718 NT_034412 NT_034413 NT_004612 NT_034414 NT_034415 NT_021953 NT_004861
NT_004525 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433 NT_034416
NT_030561 NT_034417 NT_004836 NT_004771 NT_004734 NT_031700 NT_004536 NT_032964
NT_031730 NT_029870 NT_032969 NT_032968 NT_034418


  NT_029874
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_029874AL0210261686505313RH701281618.68    1 AC078800.11, AL021026.1
S/G/Y/R/B/O NT_029874AL0210261686506893RH639081619.52  1772.801 AC078800.11, AL021026.1
S/G/Y/R/B/O NT_029874AL0210261687420433RH749051620.39    1 AL021026.1
S/G/Y/R/B/O NT_029874AL0210261687452873RH359501619.52    1 AL021026.1
S/G/Y/R/B/O NT_029874AL4456731687821133          
S/G/Y/R/B/O NT_029874AL0312741688060873RH659871619.52    1 AC104571.1, AL031274.1
S/G/Y/R/B/O NT_029874AL0312741688186813RH799041619.88    1 AL031274.1
S/G/Y/R/B/O NT_029874AL0312741688187793RH1044861620.49    1 AL031274.1
S/G/Y/R/B/O NT_029874AL0312741688539913RH639031619.52  1772.901 AL031274.1
S/G/Y/R/B/O NT_029874AL0312741688749323RH8109  16701.00  1 AL031274.1
S/G/Y/R/B/O NT_029874AL0312741688749913RH365511620.49    1 AL031274.1
S/G/Y/R/B/O NT_029874AL0312741688782783RH924561618.17    1 AL031274.1
S/G/Y/R/B/O NT_029874AL0497621689282273RH486091620.49    1 AL049762.20
S/G/Y/R/B/O NT_029874AL0497621690226363RH504121621.1816686.001777.701 AL049762.20
S/G/Y/R/B/O NT_029874AL0215791690565663RH460481619.42    1 AL021579.1
S/G/Y/R/B/O NT_029874AL0215791690654413RH362031623.40    1 AL021579.1
S/G/Y/R/B/O NT_029874AL0215791690672653RH1031311619.93    1 AL021579.1
S/G/Y/R/B/O NT_029874AL0215791690736923RH642601620.45  1772.801 AC024490.3, AL021579.1
S/G/Y/R/B/O NT_029874AL0215791690738833RH645201621.08    1 AC024490.3, AL021579.1
S/G/Y/R/B/O NT_029874Z987501691255223RH488281619.93    3 AC019058.4, AC024490.3, AL161723.12, Z98750.1
S/G/Y/R/B/O NT_029874Z987501691685693RH707121623.40    1 AC024490.3, Z98750.1
S/G/Y/R/B/O NT_029874Z987511692332503RH504501623.40  1771.601 Z98751.1
S/G/Y/R/B/O NT_029874Z987511692332623RH710261621.18  1771.601 Z98751.1
S/G/Y/R/B/O NT_029874Z987511692332623RH285311619.31    1 Z98751.1
S/G/Y/R/B/O NT_029874Z987511692344373RH183811623.40    1 AC024490.3, Z98751.1
S/G/Y/R/B/O NT_029874Z987511692348263RH671111623.40    1 AC024490.3, Z98751.1
S/G/Y/R/B/O NT_029874Z987511692371033RH1025301621.18    1 AC024490.3, Z98751.1
S/G/Y/R/B/O NT_029874AL1359311693009793          
S/G/Y/R/B/O NT_029874AL0318641693296273RH127361623.40    1 AL031864.1
S/G/Y/R/B/O NT_029874AL0318641693305363RH499061623.40  1771.601 AL031864.1
S/G/Y/R/B/O NT_029874AL0318641693305593RH265521624.83    1 AL031864.1
S/G/Y/R/B/O NT_029874AL0318641693305713RH788651619.31    1 AL031864.1
S/G/Y/R/B/O NT_029874AL1219841695368803RH645441621.18    1 AL121984.14
S/G/Y/R/B/O NT_029874AL5128431695829983          
S/G/Y/R/B/O NT_029874AL1371571697013563RH710181623.20  1768.501 AC015905.6, AL137157.7
S/G/Y/R/B/O NT_029874AL4459901697678293          
S/G/Y/R/B/O NT_029874AL1335141698101473          
S/G/Y/R/B/O NT_029874Z971951699262263RH711261623.40    1 Z97195.1
S/G/Y/R/B/O NT_029874Z971951699273183RH984431621.69    1 Z97195.1
S/G/Y/R/B/O NT_029874Z971951699292933WI-3733    1770.301 AC084122.1, Z97195.1
S/G/Y/R/B/O NT_029874Z971951699442573RH473071621.48    1 Z97195.1
S/G/Y/R/B/O NT_029874Z971951699455653RH104891623.40    1 AC084122.1, Z97195.1
S/G/Y/R/B/O NT_029874Z971951699745503RH102251623.40    1 Z97195.1
S/G/Y/R/B/O NT_029874Z971951699747163RH128891621.48    1 Z97195.1
S/G/Y/R/B/O NT_029874Z971951699807753RH639641619.6216691.001770.301 Z97195.1
S/G/Y/R/B/O NT_029874Z940541700629363          
S/G/Y/R/B/O NT_029874Z960501701444933WI-5780    1776.101 AC003117.1, Z96050.1
S/G/Y/R/B/O NT_029874Z960501701445193RH175741623.30    1 AC003117.1, Z96050.1
S/G/Y/R/B/O NT_029874Z960501701445983RH639571621.08  1770.101 AC003117.1, Z96050.1
S/G/Y/R/B/O NT_029874Z960501701991093RH710761623.3016749.00  1 AC025032.13, Z96050.1


  NT_029874 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_029874Z960501701996103AFM107YG1    1772.801 AC025032.13
S/G/Y/R/B/O NT_029874Z980431702942323WI-4864    1777.901 AC025032.13, Z98043.1
S/G/Y/R/B/O NT_029874Z971981703774673RH505971621.18  1777.801 Z97198.1
S/G/Y/R/B/O NT_029874Z971981703776513RH664371619.42    1 Z97198.1
S/G/Y/R/B/O NT_029874Z971981704469093RH162191623.20    1 Z97198.1
S/G/Y/R/B/O NT_029874Z971981704469493RH507001623.30  1770.201 Z97198.1
S/G/Y/R/B/O NT_029874AL0315991705879303RH493781623.3016751.00  1 AL031599.1
S/G/Y/R/B/O NT_029874AL0495961706114133          
S/G/Y/R/B/O NT_029874AL0223101706844043WI-5545    1770.101 AC003115.1, AC003118.1, AC003118.2, AC079390.1, AL022310.1
S/G/Y/R/B/O NT_029874AL0223101707168263RH14072  16746.00  1 AC003118.1, AC003118.2, AC079390.1, AL022310.1
S/G/Y/R/B/O NT_029874AL0223101707169413RH174501623.30    1 AC003115.1, AC003118.1, AC003118.2, AC079390.1, AL022310.1
S/G/Y/R/B/O NT_029874AL0223101707450403RH119721623.30    1 AC003115.1, AC003118.1, AC003118.2, AC079390.1, AL022310.1
S/G/Y/R/B/O NT_029874AL3600021708667303RH686591623.20    1 AL360002.5
S/G/Y/R/B/O NT_029874AL6455681709529513RH936661619.42    1 AL645568.9
S/G/Y/R/B/O NT_029874AL6455681709677343RH363601623.30    1 AL645568.9
S/G/Y/R/B/O NT_029874AL1391421710166233RH696301623.20    1 AL139142.10
S/G/Y/R/B/O NT_029874AL1391421710208363RH114901623.30    1 AL139142.10
S/G/Y/R/B/O NT_029874AL1391421710209553RH13958  16748.00  1 AL139142.10
S/G/Y/R/B/O NT_029874AL1391421710215163RH502061621.6916797.001771.501 AL139142.10
S/G/Y/R/B/O NT_029874AL1391421710215713RH253331620.55    1 AL139142.10
S/G/Y/R/B/O NT_029874AL1391421710216913RH255791623.50    1 AL139142.10
S/G/Y/R/B/O NT_029874AL1391421711391243RH505871620.04  1777.901 AC021635.3, AL139142.10
S/G/Y/R/B/O NT_029874AC0216351711669971          
S/G/Y/R/B/O NT_029874 - RH645141618.79    0  
S/G/Y/R/B/O NT_029874 - RH14502  16669.00  0  
S/G/Y/R/B/O NT_029874 - WI-6204    1767.501 AC069000.2, AL022143.1
S/G/Y/R/B/O NT_029874 - RH284621618.68    1 AL022171.1
S/G/Y/R/B/O NT_029874 - RH33089  16652.00  1 AC027620.4, AL139282.10
S/G/Y/R/B/O NT_029874 - SGC32996    1770.401 AL031290.1
S/G/Y/R/B/O NT_029874 - RH644791618.68    1 Z99127.2
S/G/Y/R/B/O NT_029874 - RH639581619.42    1 AL109921.21
S/G/Y/R/B/O NT_029874 - RH639631618.58  1770.801 Z99127.2
S/G/Y/R/B/O NT_029874 - RH504801619.31    1 Z99715.1
S/G/Y/R/B/O NT_029874 - WI-8904    1771.001 AC023505.15, Z94055.1
S/G/Y/R/B/O NT_029874 - WI-10691    1771.000 Z99127.2
S/G/Y/R/B/O NT_029874 - SGC32500    1771.001 Z94057.1
S/G/Y/R/B/O NT_029874 - SGC33706    1771.001 Z94057.1
S/G/Y/R/B/O NT_029874 - RH507531620.49  1777.902 AC009698.10, AC023147.3, AC027738.3, AC119679.1, AL096678.8
S/G/Y/R/B/O NT_029874 - RH758711618.68    1 AL451075.15
S/G/Y/R/B/O NT_029874 - RH988971623.20    0