Chromosome 1 - RH Maps - Single Contig

Chromosome 1 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_004350	NT_004321	NT_004547	NT_034374	NT_022058	NT_021917	NT_028054	NT_032967
NT_021937	NT_034375	NT_022041	NT_004873	NT_034376	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_034377	NT_030571	NT_004782	NT_028053	NT_034378
NT_004538	NT_034379	NT_034380	NT_004511	NT_004852	NT_032963	NT_032971	NT_032972
NT_004386	NT_032977	NT_004424	NT_032973	NT_029223	NT_029865	NT_031737	NT_004636
NT_034381	NT_032948	NT_034382	NT_004464	NT_034383	NT_034384	NT_004483	NT_032974
NT_004902	NT_034385	NT_026943	NT_034386	NT_029231	NT_034387	NT_004658	NT_004686
NT_034388	NT_021979	NT_034389	NT_034390	NT_034391	NT_030565	NT_034392	NT_034393
NT_028050	NT_030567	NT_034394	NT_021977	NT_034395	NT_029860	NT_019273	NT_034396
NT_031697	NT_004754	NT_032975	NT_022052	NT_034397	NT_022071	NT_004434	NT_034398
NT_034399	NT_034400	NT_034401	NT_034402	NT_034403	NT_032962	NT_034428	NT_021907
NT_004441	NT_030577	NT_004858	NT_004982	NT_026945	NT_004668	NT_034404	NT_034405
NT_029874	NT_034406	NT_004487	NT_021905	NT_004599	NT_034407	NT_004671	NT_004416
NT_029862	NT_034408	NT_034409	NT_034410	NT_034411	NT_032947	NT_029226	NT_021877
NT_031718	NT_034412	NT_034413	NT_004612	NT_034414	NT_034415	NT_021953	NT_004861
NT_004525	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433	NT_034416
NT_030561	NT_034417	NT_004836	NT_004771	NT_004734	NT_031700	NT_004536	NT_032964
NT_031730	NT_029870	NT_032969	NT_032968	NT_034418

NT_028050

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	All Accessions
S/G/Y/R/B/O	NT_028050	AL627442	99964321	3	RH64483	1	281.52					1	AL627442.10
S/G/Y/R/B/O	NT_028050	AL627442	99972130	3	RH68251	1	282.87					1	AC103593.1
S/G/Y/R/B/O	NT_028050	AL627442	100026767	3	WI-5518					1	270.80	1	AC022907.3, AL627442.10
S/G/Y/R/B/O	NT_028050	AL590110	100153432	3	RH75218	1	270.31					1	AC022907.3, AL590110.11
S/G/Y/R/B/O	NT_028050	AL161744	100185040	3	RH64658	1	282.77					1	AC022823.3, AL161744.7, AL359696.3
S/G/Y/R/B/O	NT_028050	AL445433	100338213	3	RH37474	6	156.31					5
S/G/Y/R/B/O	NT_028050	AL136147	100514231	3	CHLC.GATA4H05					1	301.60	1	AC020645.3, AL136147.10
S/G/Y/R/B/O	NT_028050	AL139425	100570911	3	RH25134	1	270.59					1	AC020645.3, AL139425.8
S/G/Y/R/B/O	NT_028050	AL139425	100570911	3	RH64637	1	286.96					1	AC020645.3, AL139425.8
S/G/Y/R/B/O	NT_028050	AL139425	100571109	3	RH64608	1	287.06					1	AC020645.3, AL139425.8
S/G/Y/R/B/O	NT_028050	AL139425	100571407	3	RH64626	1	287.06					1	AC020645.3, AL139425.8
S/G/Y/R/B/O	NT_028050	AL139425	100571423	3	RH25886	1	287.36					1	AC020645.3, AL139425.8
S/G/Y/R/B/O	NT_028050	AL139425	100571729	3	RH67075	1	289.79					1	AC020645.3, AL139425.8
S/G/Y/R/B/O	NT_028050	AL365220	100624470	3
S/G/Y/R/B/O	NT_028050	AL449063	100765304	3	RH49364	1	287.06					1	AC093559.2, AL449063.13
S/G/Y/R/B/O	NT_028050	AC093559	100912451	3	RH45321	1	291.89					1	AC093559.2, AC105270.2
S/G/Y/R/B/O	NT_028050	AC105270	100936148	3	RH70138	1	292.70					1	AC105270.2
S/G/Y/R/B/O	NT_028050	AC105270	100949105	3	RH63796	1	285.16			1	304.00	1	AC105270.2
S/G/Y/R/B/O	NT_028050	AC105270	100957179	3	RH80110	1	289.18					1	AC105270.2
S/G/Y/R/B/O	NT_028050	AC105270	100957224	3	RH36001	1	293.12					1	AC105270.2
S/G/Y/R/B/O	NT_028050	AC105270	100971770	3	RH69413	1	292.49					1	AC087461.1
S/G/Y/R/B/O	NT_028050	AC105270	101020942	3	RH67747	1	293.98					1	AC087461.1, AC105270.2
S/G/Y/R/B/O	NT_028050	AL451051	101085584	3	RH36174	5	493.48					2	AC008541.6, AC022117.3, AC026773.6, AL451051.6
S/G/Y/R/B/O	NT_028050	AC096949	101184718	3	RH8648			1	4775.00			1	AC096949.2, AC118553.1
S/G/Y/R/B/O	NT_028050	AC096949	101184989	3	RH49723	1	291.26			1	303.50	1	AC096949.2, AC118553.1
S/G/Y/R/B/O	NT_028050	AC096949	101186837	3	RH50502	1	290.83			1	304.30	1	AC096949.2, AC118553.1
S/G/Y/R/B/O	NT_028050	AC118553	101210019	1
S/G/Y/R/B/O	NT_028050	AC093019	101281914	3	RH93267	1	289.39					1	AC027557.3, AC093019.2, AC118553.1
S/G/Y/R/B/O	NT_028050	AC093019	101282866	3	RH69611	1	293.12					1	AC027557.3, AC093019.2, AC118553.1
S/G/Y/R/B/O	NT_028050	AC093019	101283881	3	RH45031	1	292.80					1	AC027557.3, AC093019.2, AC118553.1
S/G/Y/R/B/O	NT_028050	AC093019	101326692	3	RH47953	1	289.28					1	AC027557.3, AC093019.2
S/G/Y/R/B/O	NT_028050	AC093019	101327310	3	RH103389	1	293.44					1	AC027557.3, AC093019.2
S/G/Y/R/B/O	NT_028050	AC093019	101328596	3	RH45001	1	292.70					1	AC027557.3, AC093019.2, AL355995.3
S/G/Y/R/B/O	NT_028050	AC093019	101339581	3	RH50400	1	292.70			1	304.90	1	AC027557.3, AC093019.2, AL355995.3
S/G/Y/R/B/O	NT_028050	AL445928	101404779	3	RH70093	1	297.23					1	AL445928.8
S/G/Y/R/B/O	NT_028050	AL445928	101406430	3	RH64195	1	292.70	1	4806.00	1	310.10	1	AC027557.3, AL355995.3, AL445928.8
S/G/Y/R/B/O	NT_028050	AL445928	101408771	3	RH18327	1	293.23					1	AC027557.3, AL355995.3, AL445928.8
S/G/Y/R/B/O	NT_028050	AL445928	101409849	3	RH25455	1	292.70					1	AC027557.3, AL445928.8
S/G/Y/R/B/O	NT_028050	AL445928	101414200	3	RH69486	1	297.23					1	AC027557.3, AL355995.3, AL445928.8
S/G/Y/R/B/O	NT_028050	AL445928	101428129	3	RH67801	1	293.44					1	AL355995.3, AL445928.8
S/G/Y/R/B/O	NT_028050	AL445928	101429745	3	RH64281	1	289.39			1	298.50	1	AL355995.3, AL445928.8
S/G/Y/R/B/O	NT_028050	AL445928	101429745	3	RH14520			1	2889.00			1	AL355995.3, AL445928.8
S/G/Y/R/B/O	NT_028050	AL445928	101443270	3	RH64335	1	289.28			1	310.70	1	AL355995.3, AL445928.8
S/G/Y/R/B/O	NT_028050	AL445928	101452326	3	RH49779	1	292.70			1	305.40	1	AL355995.3, AL445928.8
S/G/Y/R/B/O	NT_028050	AL445928	101471401	3	RH64797	1	291.75					1	AL445928.8
S/G/Y/R/B/O	NT_028050	AL445928	101514534	3	RH66225	1	292.49					1	AL445928.8
S/G/Y/R/B/O	NT_028050	AL445928	101519281	3	RH98535	1	294.62					1	AL445928.8
S/G/Y/R/B/O	NT_028050	AL663111	101547908	3	RH49997	1	294.08			1	310.40	1	AL663111.8
S/G/Y/R/B/O	NT_028050	AC104457	101622020	3	AFMA109WH5					1	308.50	1	AC011265.4, AC104457.2
S/G/Y/R/B/O	NT_028050	AC104457	101660368	3	RH92716	1	297.23					1	AC011265.4, AC104457.2

NT_028050 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	All Accessions
S/G/Y/R/B/O	NT_028050	AL589990	101775035	3	RH27018	X	129.03					1	AL589990.9
S/G/Y/R/B/O	NT_028050	AL589990	101776225	3	RH50717	1	295.26			1	312.50	1	AC099670.2, AL589990.9
S/G/Y/R/B/O	NT_028050	AC099670	101785002	3	AFMA125XC9					1	316.60	1	AC099670.2
S/G/Y/R/B/O	NT_028050	AC099670	101798165	3	RH103790	1	296.39					1	AC099670.2
S/G/Y/R/B/O	NT_028050	AC099670	101852459	3	WI-3294					1	312.70	1	AC099670.2
S/G/Y/R/B/O	NT_028050	AL592446	101946617	3
S/G/Y/R/B/O	NT_028050	AC093428	101994628	3	RH50428	1	293.66			1	314.00	1	AC093428.2
S/G/Y/R/B/O	NT_028050	AC093428	101994631	3	RH13924			1	4823.00			1	AC093428.2
S/G/Y/R/B/O	NT_028050	AC104506	102129108	1	RH93815	1	293.66					1	AC104506.1
S/G/Y/R/B/O	NT_028050	AC104506	102130296	1	RH49818	1	293.77			1	312.50	2	AC016751.7, AC104506.1
S/G/Y/R/B/O	NT_028050	AC104506	102464616	1	RH1283			1	4857.00			2	AC104506.1, AL139019.4, AL732465.5
S/G/Y/R/B/O	NT_028050	AC104506	102464617	1	RH64505	1	298.45					2	AC104506.1, AL139019.4, AL732465.5
S/G/Y/R/B/O	NT_028050	AC104506	102464621	1	RH36936	1	282.36					2	AC104506.1, AL139019.4, AL732465.5
S/G/Y/R/B/O	NT_028050	AC104506	102466397	1	RH50118	1	292.38			1	315.90	2	AC104506.1, AL139019.4, AL732465.5
S/G/Y/R/B/O	NT_028050	AL732465	102178857	1	RH1283			1	4857.00			2	AC104506.1, AL139019.4, AL732465.5
S/G/Y/R/B/O	NT_028050	AL732465	102178858	1	RH64505	1	298.45					2	AC104506.1, AL139019.4, AL732465.5
S/G/Y/R/B/O	NT_028050	AL732465	102178862	1	RH36936	1	282.36					2	AC104506.1, AL139019.4, AL732465.5
S/G/Y/R/B/O	NT_028050	AL732465	102180638	1	RH50118	1	292.38			1	315.90	2	AC104506.1, AL139019.4, AL732465.5
S/G/Y/R/B/O	NT_028050	AL732465	102191980	1	RH46151	1	292.64					1	AC104506.1, AL139019.4, AL732465.5
S/G/Y/R/B/O	NT_028050	AL732465	102235658	1	RH64196	1	300.45			1	312.80	1	AL139019.4, AL732465.5
S/G/Y/R/B/O	NT_028050	AL732465	102235707	1	RH50284	1	297.02			1	306.60	1	AL139019.4, AL732465.5
S/G/Y/R/B/O	NT_028050	AL732465	102237738	1	RH26005	1	295.36					1	AL139019.4, AL732465.5
S/G/Y/R/B/O	NT_028050	AL732465	102237738	1	RH70028	1	298.75					1	AL139019.4, AL732465.5
S/G/Y/R/B/O	NT_028050	AC093157	102251592	3	RH64273	1	297.84			1	312.60	1	AL139019.4
S/G/Y/R/B/O	NT_028050	AC093157	102251592	3	RH68640	1	298.14					1	AC093157.2, AL139019.4, AL732465.5
S/G/Y/R/B/O	NT_028050	AC093157	102337539	3	RH104048	1	300.25					1	AC093157.2
S/G/Y/R/B/O	NT_028050	AC093157	102343260	3	RH99128	1	298.45					1	AC093157.2
S/G/Y/R/B/O	NT_028050	AC093157	102388200	3	RH2522	1	295.26			1	316.60	1	AC093157.2
S/G/Y/R/B/O	NT_028050	AC093157	102388200	3	RH833			1	4881.00			1	AC093157.2
S/G/Y/R/B/O	NT_028050	AC119501	102505295	1	D1S206					1	318.30	1	AC119501.1, AL109741.19
S/G/Y/R/B/O	NT_028050	AC119501	102520541	1	RH92741	1	297.63					1	AC119501.1, AL109741.19
S/G/Y/R/B/O	NT_028050	AL109741	102526033	3	RH71016	1	294.57					1	AC119501.1, AL109741.19
S/G/Y/R/B/O	NT_028050	AL109741	102526824	3	RH75143	1	295.15					1	AC119501.1, AL109741.19
S/G/Y/R/B/O	NT_028050	AL109741	102529176	3	RH102884	1	300.15					1	AC119501.1, AL109741.19
S/G/Y/R/B/O	NT_028050	AL732605	102618601	1
S/G/Y/R/B/O	NT_028050	AL662904	102722237	3
S/G/Y/R/B/O	NT_028050	AC114483	102749266	1
S/G/Y/R/B/O	NT_028050	AL732416	102792505	2	RH49260	1	300.05					1	AC114483.1, AL390200.6
S/G/Y/R/B/O	NT_028050	AL732416	102826802	2	RH49643	1	300.35			1	332.00	1	AC023327.4, AC114483.1, AL390200.6
S/G/Y/R/B/O	NT_028050	AC104334	102967746	1	D1S486					1	325.90	1	AC023327.4, AC104334.1
S/G/Y/R/B/O	NT_028050	AC104334	102967746	1	RH29954			1	4901.00			1	AC023327.4, AC104334.1
S/G/Y/R/B/O	NT_028050	AC016423	103057011	1
S/G/Y/R/B/O	NT_028050	AL359760	103093837	3	RH38077			1	4894.00			1	AC016423.5, AL158170.4, AL359760.10
S/G/Y/R/B/O	NT_028050	AL356280	103143317	3
S/G/Y/R/B/O	NT_028050	AL592154	103390712	3	RH42571	1	303.41					1	AL592154.6
S/G/Y/R/B/O	NT_028050	AL592154	103390762	3	RH417			1	4920.00			1	AL592154.6
S/G/Y/R/B/O	NT_028050	AC114485	103425093	3
S/G/Y/R/B/O	NT_028050	AL359928	103563715	3
S/G/Y/R/B/O	NT_028050	AL359197	103625570	3
S/G/Y/R/B/O	NT_028050	AL627310	103825009	3	RH49272	1	306.45	1	4936.00			1	AL627310.5, AL627316.13, AL645770.7

NT_028050 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	All Accessions
S/G/Y/R/B/O	NT_028050	AL645488	103952663	3
S/G/Y/R/B/O	NT_028050	AC099567	104171513	1	RH69716	1	306.56					1	AC021948.3, AC099567.2
S/G/Y/R/B/O	NT_028050	AC099567	104172663	1	RH63785	1	308.08	1	4950.00	1	337.50	1	AC021948.3, AC022751.3, AC099567.2
S/G/Y/R/B/O	NT_028050	AC099567	104172769	1	RH49992	1	308.19					1	AC021948.3, AC022751.3, AC099567.2
S/G/Y/R/B/O	NT_028050	AC099567	104172769	1	WI-15584					1	350.30	1	AC021948.3, AC022751.3, AC099567.2
S/G/Y/R/B/O	NT_028050	AC099567	104172842	1	RH10945	1	306.56					1	AC021948.3, AC022751.3, AC099567.2
S/G/Y/R/B/O	NT_028050	AC099567	104185594	1	RH18326	1	293.87					1	AC021948.3, AC022751.3, AC099567.2
S/G/Y/R/B/O	NT_028050	AC021948	104147011	1
S/G/Y/R/B/O	NT_028050	AL627203	104255501	3	RH64293	1	306.23	1	4950.00	1	324.60	1	AC021948.3, AC022751.3, AL627203.7
S/G/Y/R/B/O	NT_028050	AC093150	104397862	3	RH98519	7	643.53					2	AC006344.2, AC023303.3, AC092429.2, AC093150.2
S/G/Y/R/B/O	NT_028050	AL590082	104487274	3
S/G/Y/R/B/O	NT_028050		-		RH11043	1	302.80					1	AC105272.2
S/G/Y/R/B/O	NT_028050		-		RH11727	1	290.73					0	AC118553.1
S/G/Y/R/B/O	NT_028050		-		RH48977	1	292.43					2	AC013599.5, AC025933.2, AC105272.2, AL513482.5, AL590104.7
S/G/Y/R/B/O	NT_028050		-		RH49156	1	307.97					1	AL583863.16
S/G/Y/R/B/O	NT_028050		-		RH64359	1	282.98					1	AC011780.3, AC073364.9, AL355145.31
S/G/Y/R/B/O	NT_028050		-		RH68777	1	300.25					0
S/G/Y/R/B/O	NT_028050		-		RH69108	1	295.89					2	AC026850.2, AC073194.4, AP000720.4
S/G/Y/R/B/O	NT_028050		-		RH69118	1	300.25					0
S/G/Y/R/B/O	NT_028050		-		RH78119	1	291.75					0