Chromosome 1 - RH Maps - Single Contig

Chromosome 1 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_004350	NT_004321	NT_004547	NT_034374	NT_022058	NT_021917	NT_028054	NT_032967
NT_021937	NT_034375	NT_022041	NT_004873	NT_034376	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_034377	NT_030571	NT_004782	NT_028053	NT_034378
NT_004538	NT_034379	NT_034380	NT_004511	NT_004852	NT_032963	NT_032971	NT_032972
NT_004386	NT_032977	NT_004424	NT_032973	NT_029223	NT_029865	NT_031737	NT_004636
NT_034381	NT_032948	NT_034382	NT_004464	NT_034383	NT_034384	NT_004483	NT_032974
NT_004902	NT_034385	NT_026943	NT_034386	NT_029231	NT_034387	NT_004658	NT_004686
NT_034388	NT_021979	NT_034389	NT_034390	NT_034391	NT_030565	NT_034392	NT_034393
NT_028050	NT_030567	NT_034394	NT_021977	NT_034395	NT_029860	NT_019273	NT_034396
NT_031697	NT_004754	NT_032975	NT_022052	NT_034397	NT_022071	NT_004434	NT_034398
NT_034399	NT_034400	NT_034401	NT_034402	NT_034403	NT_032962	NT_034428	NT_021907
NT_004441	NT_030577	NT_004858	NT_004982	NT_026945	NT_004668	NT_034404	NT_034405
NT_029874	NT_034406	NT_004487	NT_021905	NT_004599	NT_034407	NT_004671	NT_004416
NT_029862	NT_034408	NT_034409	NT_034410	NT_034411	NT_032947	NT_029226	NT_021877
NT_031718	NT_034412	NT_034413	NT_004612	NT_034414	NT_034415	NT_021953	NT_004861
NT_004525	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433	NT_034416
NT_030561	NT_034417	NT_004836	NT_004771	NT_004734	NT_031700	NT_004536	NT_032964
NT_031730	NT_029870	NT_032969	NT_032968	NT_034418

NT_029860

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	All Accessions
S/G/Y/R/B/O	NT_029860	AL512844	106802773	3
S/G/Y/R/B/O	NT_029860	AL451052	106961790	3
S/G/Y/R/B/O	NT_029860	AL591162	107069654	3
S/G/Y/R/B/O	NT_029860	AL355306	107072549	3
S/G/Y/R/B/O	NT_029860	AL606526	107177609	3
S/G/Y/R/B/O	NT_029860	AC103596	107341330	3	RH35322			1	5022.00			1	AL162402.17
S/G/Y/R/B/O	NT_029860	AL162402	107383508	1
S/G/Y/R/B/O	NT_029860	AC093119	107459226	3
S/G/Y/R/B/O	NT_029860	AL499605	107655819	3	D1S248					1	365.10	1	AL499605.6
S/G/Y/R/B/O	NT_029860	AL499605	107655819	3	RH13403	1	324.46					1	AL499605.6
S/G/Y/R/B/O	NT_029860	AL596327	107748317	3
S/G/Y/R/B/O	NT_029860	AL627169	107841054	3
S/G/Y/R/B/O	NT_029860	AL590453	107873854	3
S/G/Y/R/B/O	NT_029860	AL645858	108059315	3
S/G/Y/R/B/O	NT_029860	AL355539	108102518	3	RH50802	1	334.44			1	356.80	1	AC074376.2
S/G/Y/R/B/O	NT_029860	AL590427	108191590	3	RH68940	1	334.11					1	AL590427.15
S/G/Y/R/B/O	NT_029860	AL513187	108368459	3	RH12008	1	334.00					1	AL513187.6, AL607133.4
S/G/Y/R/B/O	NT_029860	AL513187	108378691	3	RH92811	1	336.10					1	AL513187.6, AL607133.4
S/G/Y/R/B/O	NT_029860	AL513187	108452941	3	RH68911	1	334.11					1	AC016085.3, AL513187.6, AL607133.4
S/G/Y/R/B/O	NT_029860	AC114491	108489622	3	RH42898			1	5035.00			1	AC016085.3, AC114491.1
S/G/Y/R/B/O	NT_029860	AC114491	108548813	3	RH41954	1	334.29					1	AC016085.3, AC114491.1
S/G/Y/R/B/O	NT_029860	AC114491	108614677	3	RH78788	1	334.33					1	AC114491.1
S/G/Y/R/B/O	NT_029860	AC114491	108615492	3	RH12461	1	335.99					1	AC114491.1
S/G/Y/R/B/O	NT_029860	AC114491	108615547	3	RH75020	1	334.22					1	AC114491.1
S/G/Y/R/B/O	NT_029860	AL513206	108661840	3
S/G/Y/R/B/O	NT_029860	AL591042	108769864	3
S/G/Y/R/B/O	NT_029860	AL353892	108915892	3
S/G/Y/R/B/O	NT_029860	AL391235	108958760	3
S/G/Y/R/B/O	NT_029860	AL390036	109037871	3	RH92835	1	334.00					1	AC021401.4, AL390036.17
S/G/Y/R/B/O	NT_029860	AL390036	109178340	3	RH17454	1	334.11					1	AC013627.3, AL356110.1, AL390036.17
S/G/Y/R/B/O	NT_029860	AL390036	109211707	3	RH103471	1	334.73					1	AC013627.3, AL356110.1, AL359258.23, AL390036.17
S/G/Y/R/B/O	NT_029860	AL359258	109246038	3	RH98713	1	334.29					1	AC013627.3, AL359258.23
S/G/Y/R/B/O	NT_029860	AL359258	109304711	3	RH11932	1	335.19					2	AL359258.23, AL390038.18, AL672086.3
S/G/Y/R/B/O	NT_029860	AL359258	109304736	3	RH16956	1	334.11					2	AL359258.23, AL390038.18, AL672086.3
S/G/Y/R/B/O	NT_029860	AL160171	109400324	1	RH26550	1	334.29					2	AL160171.25, AL354724.3, AL591719.8
S/G/Y/R/B/O	NT_029860	AL160171	109400449	1	RH45744	1	335.41					2	AL160171.25, AL354724.3, AL591719.8
S/G/Y/R/B/O	NT_029860	AL160171	109449248	1	RH12040	1	336.55					1	AC026072.3, AL160171.25
S/G/Y/R/B/O	NT_029860	AL160171	109449267	1	RH10658	1	335.76					1	AC026072.3, AL160171.25
S/G/Y/R/B/O	NT_029860	AL160171	109458498	1	RH25048	1	335.94					1	AC026072.3, AL160171.25
S/G/Y/R/B/O	NT_029860	AL160171	109458582	1	RH67201	1	337.13					1	AC026072.3, AL160171.25
S/G/Y/R/B/O	NT_029860	AL160171	109459582	1	RH64616	1	336.33					1	AC026072.3, AL160171.25
S/G/Y/R/B/O	NT_029860	AL160171	109469880	1	RH26009	1	336.22					1	AC026072.3, AL160171.25
S/G/Y/R/B/O	NT_029860	AL160171	109511275	1	AFMB014ZB9					1	382.10	1	AC026072.3
S/G/Y/R/B/O	NT_029860	AL160171	109534924	1	RH50294	1	334.22			1	374.40	1	AC026072.3, AL160171.25
S/G/Y/R/B/O	NT_029860	AL160171	109534932	1	RH12031	1	334.66					1	AC026072.3, AL160171.25
S/G/Y/R/B/O	NT_029860	AL160171	109536250	1	RH45435	1	336.44					1	AC026072.3, AL160171.25
S/G/Y/R/B/O	NT_029860	AL160171	109536351	1	RH25513	1	334.11					1	AC026072.3, AL160171.25
S/G/Y/R/B/O	NT_029860	AL392088	109558354	3
S/G/Y/R/B/O	NT_029860	AL390038	109664593	3	RH11932	1	335.19					2	AL359258.23, AL390038.18, AL672086.3
S/G/Y/R/B/O	NT_029860	AL390038	109664618	3	RH16956	1	334.11					2	AL359258.23, AL390038.18, AL672086.3

NT_029860 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	All Accessions
S/G/Y/R/B/O	NT_029860	AL354724	109689085	1
S/G/Y/R/B/O	NT_029860	AC011645	109699084	1
S/G/Y/R/B/O	NT_029860	AL356488	109715112	3	RH17815	1	344.84					2	AC011645.3, AL356488.21
S/G/Y/R/B/O	NT_029860	AL356488	109715157	3	RH64472	1	338.33			1	389.90	2	AC011645.3, AL356488.21
S/G/Y/R/B/O	NT_029860	AL356488	109715171	3	RH25122	1	341.30					2	AC011645.3, AL356488.21
S/G/Y/R/B/O	NT_029860	AL356488	109722345	3	RH68560	1	342.67					2	AC011645.3, AC016518.2, AL356488.21
S/G/Y/R/B/O	NT_029860	AL449266	109793706	3	RH10543	1	342.78					1	AC016518.2, AL358592.6, AL449266.17
S/G/Y/R/B/O	NT_029860	AL449266	109813165	3	RH50225	1	340.50			1	400.40	1	AC016518.2, AC025386.4, AL358592.6, AL449266.17
S/G/Y/R/B/O	NT_029860	AL449266	109825991	3	RH12481	1	340.11					1	AC016518.2, AC025386.4, AL358592.6, AL449266.17
S/G/Y/R/B/O	NT_029860	AL449266	109825993	3	RH50452	1	339.89			1	401.40	1	AC016518.2, AC025386.4, AL358592.6, AL449266.17
S/G/Y/R/B/O	NT_029860	AL449266	109826041	3	RH49789	1	339.42			1	401.20	1	AC016518.2, AC025386.4, AL358592.6, AL449266.17
S/G/Y/R/B/O	NT_029860	AL449266	109826042	3	RH50848	1	341.53			1	402.60	1	AC016518.2, AC025386.4, AL358592.6, AL449266.17
S/G/Y/R/B/O	NT_029860	AL449266	109827157	3	RH64218	1	337.59			1	401.50	1	AC016518.2, AC025386.4, AL358592.6, AL449266.17
S/G/Y/R/B/O	NT_029860	AL449266	109830308	3	RH69500	1	341.58					1	AC016518.2, AC025386.4, AL358592.6, AL449266.17
S/G/Y/R/B/O	NT_029860	AL449266	109832533	3	RH38149			1	5058.00			1	AC016518.2, AC025386.4, AL358592.6, AL449266.17
S/G/Y/R/B/O	NT_029860	AL449266	109832663	3	RH98217	1	337.19					1	AC016518.2, AL358592.6, AL449266.17
S/G/Y/R/B/O	NT_029860	AL449266	109954638	3	RH12242	1	336.44					1	AC025386.4, AL354724.3, AL357116.7, AL449266.17
S/G/Y/R/B/O	NT_029860	AL591719	110061272	3	RH50755	1	337.65	1	5045.00	1	390.50	1	AL354724.3, AL591719.8
S/G/Y/R/B/O	NT_029860	AL591719	110063125	3	RH91206	1	337.76					1	AL591719.8
S/G/Y/R/B/O	NT_029860	AL591719	110063265	3	RH14663			1	5045.00			1	AL591719.8
S/G/Y/R/B/O	NT_029860	AL591719	110066685	3	RH26550	1	334.29					2	AL160171.25, AL354724.3, AL591719.8
S/G/Y/R/B/O	NT_029860	AL591719	110066810	3	RH45744	1	335.41					2	AL160171.25, AL354724.3, AL591719.8
S/G/Y/R/B/O	NT_029860	AL138933	110111009	3	RH68560	1	342.67					2	AC011645.3, AC016518.2, AL356488.21
S/G/Y/R/B/O	NT_029860	AL138933	110118266	3	RH64472	1	338.33			1	389.90	2	AC011645.3, AL356488.21
S/G/Y/R/B/O	NT_029860	AL138933	110118327	3	RH17815	1	344.84					2	AC011645.3, AL356488.21
S/G/Y/R/B/O	NT_029860	AL138933	110118345	3	RH25122	1	341.30					2	AC011645.3, AL356488.21
S/G/Y/R/B/O	NT_029860	AL138933	110160184	3	GCT8C07					1	396.70	1	AC011645.3, AL138933.18
S/G/Y/R/B/O	NT_029860	AL356389	110238864	3	RH37772			1	5084.00			1	AL157901.5, AL356389.20
S/G/Y/R/B/O	NT_029860	AL356389	110258923	3	RH36146	1	340.67					1	AL157901.5, AL356389.20
S/G/Y/R/B/O	NT_029860	AL356389	110259411	3	RH69912	1	346.22					1	AL356389.20
S/G/Y/R/B/O	NT_029860	AL356389	110259551	3	RH74941	1	338.50					1	AL356389.20
S/G/Y/R/B/O	NT_029860	AL356389	110259586	3	RH36634	1	341.81					1	AL356389.20
S/G/Y/R/B/O	NT_029860	AL356389	110260139	3	RH64311	1	337.93			1	393.90	1	AL157901.5, AL356389.20
S/G/Y/R/B/O	NT_029860	AL390252	110295745	3	RH80782	1	338.44					1	AL157901.5, AL390252.9
S/G/Y/R/B/O	NT_029860	AL390252	110296814	3	RH32454			1	5074.00			1	AL157901.5, AL390252.9
S/G/Y/R/B/O	NT_029860	AL390252	110301238	3	RH78259	1	338.62					1	AL157901.5, AL390252.9
S/G/Y/R/B/O	NT_029860	AL390252	110314040	3	RH36392	1	337.59					1	AL390252.9
S/G/Y/R/B/O	NT_029860	AL390252	110331322	3	RH63842	1	337.59			1	401.20	1	AL157901.5, AL390252.9
S/G/Y/R/B/O	NT_029860	AL390252	110332738	3	RH26739	1	337.93					1	AC010830.4, AL157901.5, AL390252.9
S/G/Y/R/B/O	NT_029860	AL390252	110420713	3	RH64225	1	337.19			1	390.80	1	AC010830.4, AC073364.9, AL390252.9
S/G/Y/R/B/O	NT_029860	AL390252	110420713	3	RH25114	1	338.73					1	AC010830.4, AC073364.9, AL390252.9
S/G/Y/R/B/O	NT_029860	AL390252	110421956	3	RH64748	1	337.99					1	AC010830.4, AC073364.9, AL390252.9
S/G/Y/R/B/O	NT_029860	AL356735	110439536	3	RH67378	1	339.42					1	AC010830.4, AC073364.9, AL356735.12
S/G/Y/R/B/O	NT_029860	AL355145	110512593	3	RH69920	1	337.99					1	AC011780.3, AC073364.9, AL355145.31
S/G/Y/R/B/O	NT_029860	AL355145	110521771	3	WI-15799					1	402.70	1	AC011780.3, AC073364.9, AL355145.31
S/G/Y/R/B/O	NT_029860	AL355145	110521771	3	RH64359	1	282.98					1	AC011780.3, AC073364.9, AL355145.31
S/G/Y/R/B/O	NT_029860	AL355145	110525849	3	RH50810	1	337.87			1	393.70	1	AC011780.3, AC073364.9, AL355145.31
S/G/Y/R/B/O	NT_029860	AL355145	110525859	3	RH18320	1	337.25					1	AC011780.3, AC073364.9, AL355145.31
S/G/Y/R/B/O	NT_029860	AL355310	110568444	3	RH99215	1	338.33					1	AC011780.3, AL355310.19
S/G/Y/R/B/O	NT_029860	AL355310	110613902	3	RH50872	1	338.96			1	401.70	1	AL355310.19

NT_029860 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	All Accessions
S/G/Y/R/B/O	NT_029860	AL355310	110624763	3	RH70972	1	339.54					1	AL355310.19
S/G/Y/R/B/O	NT_029860	AL355310	110653596	3	RH17175	1	342.22					1	AC011780.3, AL353702.8, AL355310.19
S/G/Y/R/B/O	NT_029860	AL355310	110686556	3	RH8994			1	5093.00			1	AC000031.5, AL353702.8, AL355310.19
S/G/Y/R/B/O	NT_029860	AL355310	110686561	3	RH68514	1	339.54					1	AC000031.5, AL353702.8, AL355310.19
S/G/Y/R/B/O	NT_029860	AC000031	110693029	3	RH65389	1	338.96					1	AC000031.5, AL353702.8
S/G/Y/R/B/O	NT_029860	AC000031	110696507	3	RH8973			1	5097.00			2	AC000031.5, AC000032.7, AL353702.8
S/G/Y/R/B/O	NT_029860	AC000032	110714966	3	RH8973			1	5097.00			2	AC000031.5, AC000032.7, AL353702.8
S/G/Y/R/B/O	NT_029860	AL158847	110739096	3	RH49824	1	339.02			1	402.90	1	AC002520.2, AL158847.22, AL353702.8
S/G/Y/R/B/O	NT_029860	AL158847	110739097	3	RH8638			1	5095.00			1	AC002520.2, AL158847.22, AL353702.8
S/G/Y/R/B/O	NT_029860	AL158847	110758452	3	RH93905	1	344.51					1	AL158847.22, AL353702.8
S/G/Y/R/B/O	NT_029860	AL158847	110771750	3	RH64192	1	338.67			1	390.20	1	AL158847.22
S/G/Y/R/B/O	NT_029860	AL158847	110780760	3	RH924			1	5107.00			1	AL158847.22
S/G/Y/R/B/O	NT_029860	AL158847	110805684	3	RH7827			2	5138.00			3	AC092675.2, AL162590.15
S/G/Y/R/B/O	NT_029860	AL450468	110867108	3
S/G/Y/R/B/O	NT_029860		-		RH69139	1	339.02					0
S/G/Y/R/B/O	NT_029860		-		WI-15584					1	350.30	1	AC021948.3, AC022751.3, AC099567.2
S/G/Y/R/B/O	NT_029860		-		RH70268	1	340.34					0
S/G/Y/R/B/O	NT_029860		-		WI-18529					1	389.40	1	AC022181.3, AL049557.19
S/G/Y/R/B/O	NT_029860		-		RH74910	1	337.19					2	AC016258.10, AC025423.32, AC025714.3
S/G/Y/R/B/O	NT_029860		-		AFMB017ZG1					1	389.40	1	AC068027.2
S/G/Y/R/B/O	NT_029860		-		RH75795	1	337.25					0
S/G/Y/R/B/O	NT_029860		-		WI-22194					1	389.70	1	AL109932.14, AL354760.11, AL390062.13
S/G/Y/R/B/O	NT_029860		-		RH78099	1	337.93					1	AL360171.14, AL772411.1
S/G/Y/R/B/O	NT_029860		-		WI-3783					1	389.90	1	AL160006.16, AL360171.14
S/G/Y/R/B/O	NT_029860		-		RH93504	1	338.33					0
S/G/Y/R/B/O	NT_029860		-		AFMA247XF9					1	389.90	1	AL603832.20
S/G/Y/R/B/O	NT_029860		-		SGC33509					1	389.90	1	AC024481.3, AL603832.20
S/G/Y/R/B/O	NT_029860		-		WI-14165					1	391.30	1	AL139154.5, AL513202.22