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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_004350 NT_004321 NT_004547 NT_034374 NT_022058 NT_021917 NT_028054 NT_032967
NT_021937 NT_034375 NT_022041 NT_004873 NT_034376 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_034377 NT_030571 NT_004782 NT_028053 NT_034378
NT_004538 NT_034379 NT_034380 NT_004511 NT_004852 NT_032963 NT_032971 NT_032972
NT_004386 NT_032977 NT_004424 NT_032973 NT_029223 NT_029865 NT_031737 NT_004636
NT_034381 NT_032948 NT_034382 NT_004464 NT_034383 NT_034384 NT_004483 NT_032974
NT_004902 NT_034385 NT_026943 NT_034386 NT_029231 NT_034387 NT_004658 NT_004686
NT_034388 NT_021979 NT_034389 NT_034390 NT_034391 NT_030565 NT_034392 NT_034393
NT_028050 NT_030567 NT_034394 NT_021977 NT_034395 NT_029860 NT_019273 NT_034396
NT_031697 NT_004754 NT_032975 NT_022052 NT_034397 NT_022071 NT_004434 NT_034398
NT_034399 NT_034400 NT_034401 NT_034402 NT_034403 NT_032962 NT_034428 NT_021907
NT_004441 NT_030577 NT_004858 NT_004982 NT_026945 NT_004668 NT_034404 NT_034405
NT_029874 NT_034406 NT_004487 NT_021905 NT_004599 NT_034407 NT_004671 NT_004416
NT_029862 NT_034408 NT_034409 NT_034410 NT_034411 NT_032947 NT_029226 NT_021877
NT_031718 NT_034412 NT_034413 NT_004612 NT_034414 NT_034415 NT_021953 NT_004861
NT_004525 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433 NT_034416
NT_030561 NT_034417 NT_004836 NT_004771 NT_004734 NT_031700 NT_004536 NT_032964
NT_031730 NT_029870 NT_032969 NT_032968 NT_034418


  NT_004386
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004386AL603888459893223          
S/G/Y/R/B/O NT_004386AL645480461551273SGC30506    1154.401 AL645480.8
S/G/Y/R/B/O NT_004386AL645480461551273RH508221143.35    1 AL645480.8
S/G/Y/R/B/O NT_004386AL645480461611963RH693621143.98    1 AL645480.8
S/G/Y/R/B/O NT_004386AL645480461659523RH667511145.09    1 AL645480.8
S/G/Y/R/B/O NT_004386AL358075461952923RH678341144.36    1 AL358075.10
S/G/Y/R/B/O NT_004386AL358075461954323RH506071144.08    1 AL358075.10
S/G/Y/R/B/O NT_004386AL358075461954323WI-21964    1169.601 AL358075.10
S/G/Y/R/B/O NT_004386AL358075461954323RH32374  12440.00  1 AL358075.10
S/G/Y/R/B/O NT_004386AL358075461956013RH472231143.98    1 AL358075.10
S/G/Y/R/B/O NT_004386AL358075461998583RH670291143.46    1 AL358075.10
S/G/Y/R/B/O NT_004386AL358075462006913RH497821143.87  1159.201 AL358075.10
S/G/Y/R/B/O NT_004386AL358075462007843RH164841143.87    1 AL358075.10
S/G/Y/R/B/O NT_004386AL358075462472583RH366971144.08    1 AL358075.10
S/G/Y/R/B/O NT_004386AL358075462484953RH271821144.08    1 AL358075.10
S/G/Y/R/B/O NT_004386AL358075462943333RH931181144.04    1 AL358075.10
S/G/Y/R/B/O NT_004386AL672043463451273RH678291144.08    1 AL360086.5, AL672043.15
S/G/Y/R/B/O NT_004386AL672043463483273RH122091143.77    1 AL360086.5, AL672043.15
S/G/Y/R/B/O NT_004386AL672043463483273RH461911143.46    1 AL360086.5, AL672043.15
S/G/Y/R/B/O NT_004386AL121602464373141RH931401143.98    1 AL121602.33, AL360086.5
S/G/Y/R/B/O NT_004386AL121602464378271RH285551144.40    1 AL121602.33, AL157894.5, AL360086.5
S/G/Y/R/B/O NT_004386AL121602464380781RH709501144.91    1 AL121602.33, AL360086.5
S/G/Y/R/B/O NT_004386AL121602464380881RH470451144.40    1 AL121602.33, AL360086.5
S/G/Y/R/B/O NT_004386AL121602464382801RH502311144.29    1 AL121602.33, AL157894.5, AL360086.5
S/G/Y/R/B/O NT_004386AL121602464382801WI-20790    1169.601 AL121602.33, AL157894.5, AL360086.5
S/G/Y/R/B/O NT_004386AL121602464382951RH709321143.72    1 AL121602.33, AL360086.5
S/G/Y/R/B/O NT_004386AL122001464763583RH8763  19024.00  1 AC058783.22, AC058783.22, AL121602.33, AL122001.32, AL157894.5, AL360086.5, AL450998.19
S/G/Y/R/B/O NT_004386AL122001464763913RH63867154.20    1 AC058783.22, AL121602.33, AL122001.32, AL360086.5
S/G/Y/R/B/O NT_004386AL122001465218353RH496111143.46  1157.601 AL122001.32, AL137799.4, AL157894.5
S/G/Y/R/B/O NT_004386AL122001465218813RH108651145.33    1 AL122001.32, AL137799.4
S/G/Y/R/B/O NT_004386AL122001465235403RH704441145.33    1 AL122001.32, AL137799.4
S/G/Y/R/B/O NT_004386AL122001465243603RH653281145.91    1 AL121602.33, AL122001.32, AL137799.4, AL157894.5
S/G/Y/R/B/O NT_004386AL122001465287923RH285271144.40    1 AL122001.32, AL137799.4, AL157894.5
S/G/Y/R/B/O NT_004386AL122001465733043RH498591145.30    1 AL122001.32, AL137799.4, AL157894.5
S/G/Y/R/B/O NT_004386AL122001465733043WI-15790    1162.301 AL122001.32, AL137799.4, AL157894.5
S/G/Y/R/B/O NT_004386AL122001465780343WI-11165    1167.001 AL122001.32, AL137799.4, AL157894.5
S/G/Y/R/B/O NT_004386AL137797465896433WI-3019    1167.601 AL137797.9, AL137799.4, AL157894.5
S/G/Y/R/B/O NT_004386AL137797465960093RH648031145.19    1 AL137797.9, AL137799.4, AL157894.5
S/G/Y/R/B/O NT_004386AL136373466948453RH983821145.91    1 AL136373.21
S/G/Y/R/B/O NT_004386AL136373467164653RH485041143.46    1 AL136373.21
S/G/Y/R/B/O NT_004386AL136373467172373RH502581145.50    1 AL136373.21, AL357392.5
S/G/Y/R/B/O NT_004386AL136373467172373WI-19607    1167.501 AL136373.21, AL357392.5
S/G/Y/R/B/O NT_004386AL136373467173203RH104611143.98    1 AL136373.21, AL357392.5
S/G/Y/R/B/O NT_004386AL136373467437423RH647741145.50    1 AL136373.21, AL357392.5
S/G/Y/R/B/O NT_004386AL136373467437423RH1939  12377.00  1 AL136373.21, AL357392.5
S/G/Y/R/B/O NT_004386AL136373467675623RH810541144.50    1 AL136373.21, AL357392.5
S/G/Y/R/B/O NT_004386AL136373467925803RH167321145.40    1 AL136373.21, AL357392.5
S/G/Y/R/B/O NT_004386AL136373467948533RH647841145.50    1 AL136373.21, AL357392.5
S/G/Y/R/B/O NT_004386AL136373467948533RH7982  12267.00  1 AL136373.21, AL357392.5
S/G/Y/R/B/O NT_004386AL593856468331903RH1035251145.33    1 AC013593.3, AL357392.5, AL593856.8


  NT_004386 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004386AL593856468349653RH497341145.40    1 AC013593.3, AL357392.5, AL593856.8
S/G/Y/R/B/O NT_004386AL593856468349653WI-18600    1167.001 AC013593.3, AL357392.5, AL593856.8
S/G/Y/R/B/O NT_004386AL593856468349653RH158161143.77    1 AC013593.3, AL357392.5, AL593856.8
S/G/Y/R/B/O NT_004386AL593856468363743RH501521145.91    1 AC013593.3, AC025360.1, AL357392.5, AL593856.8
S/G/Y/R/B/O NT_004386AL593856468363743WI-11938    1167.601 AC013593.3, AC025360.1, AL357392.5, AL593856.8
S/G/Y/R/B/O NT_004386AL593856468559303RH362091145.61    1 AC013593.3, AL593856.8
S/G/Y/R/B/O NT_004386AL593856468728613RH365151145.33    1 AC013593.3, AL593856.8
S/G/Y/R/B/O NT_004386AL356793469786193RH647641145.50    1 AL356793.19
S/G/Y/R/B/O NT_004386AL356793469786193RH1860  12378.00  1 AL356793.19
S/G/Y/R/B/O NT_004386AL356793469788463RH657401150.97    1 AL356793.19
S/G/Y/R/B/O NT_004386AL356793470027713RH174791143.98    2 AL135960.1, AL390073.5, AL450996.1
S/G/Y/R/B/O NT_004386AL731892470498352RH764241145.71    1 AL450996.1, AL731892.6
S/G/Y/R/B/O NT_004386AL731892470898502RH783301145.40    1 AL731892.6
S/G/Y/R/B/O NT_004386AL731892470958742RH128581145.50    2 AL731892.6
S/G/Y/R/B/O NT_004386 - RH1045421145.71    0  
S/G/Y/R/B/O NT_004386 - RH1045461145.71    0  
S/G/Y/R/B/O NT_004386 - RH464581143.87    1 AL500525.4
S/G/Y/R/B/O NT_004386 - RH650211143.83    0  
S/G/Y/R/B/O NT_004386 - RH764721145.61    0  
S/G/Y/R/B/O NT_004386 - RH803511143.62    0  
S/G/Y/R/B/O NT_004386 - RH982101143.77    0  
S/G/Y/R/B/O NT_004386 - RH991981145.50    0 AL450996.1