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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_004350 NT_004321 NT_004547 NT_034374 NT_022058 NT_021917 NT_028054 NT_032967
NT_021937 NT_034375 NT_022041 NT_004873 NT_034376 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_034377 NT_030571 NT_004782 NT_028053 NT_034378
NT_004538 NT_034379 NT_034380 NT_004511 NT_004852 NT_032963 NT_032971 NT_032972
NT_004386 NT_032977 NT_004424 NT_032973 NT_029223 NT_029865 NT_031737 NT_004636
NT_034381 NT_032948 NT_034382 NT_004464 NT_034383 NT_034384 NT_004483 NT_032974
NT_004902 NT_034385 NT_026943 NT_034386 NT_029231 NT_034387 NT_004658 NT_004686
NT_034388 NT_021979 NT_034389 NT_034390 NT_034391 NT_030565 NT_034392 NT_034393
NT_028050 NT_030567 NT_034394 NT_021977 NT_034395 NT_029860 NT_019273 NT_034396
NT_031697 NT_004754 NT_032975 NT_022052 NT_034397 NT_022071 NT_004434 NT_034398
NT_034399 NT_034400 NT_034401 NT_034402 NT_034403 NT_032962 NT_034428 NT_021907
NT_004441 NT_030577 NT_004858 NT_004982 NT_026945 NT_004668 NT_034404 NT_034405
NT_029874 NT_034406 NT_004487 NT_021905 NT_004599 NT_034407 NT_004671 NT_004416
NT_029862 NT_034408 NT_034409 NT_034410 NT_034411 NT_032947 NT_029226 NT_021877
NT_031718 NT_034412 NT_034413 NT_004612 NT_034414 NT_034415 NT_021953 NT_004861
NT_004525 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433 NT_034416
NT_030561 NT_034417 NT_004836 NT_004771 NT_004734 NT_031700 NT_004536 NT_032964
NT_031730 NT_029870 NT_032969 NT_032968 NT_034418


  NT_004658
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004658AL136382873147393RH502591243.97  1247.201 AL136382.6, AL354988.6
S/G/Y/R/B/O NT_004658AL136382873147393RH14400  14232.00  1 AL136382.6, AL354988.6
S/G/Y/R/B/O NT_004658AL136382873238493RH643971242.75  1247.101 AL136382.6, AL354988.6
S/G/Y/R/B/O NT_004658AC119749874240831RH110391243.23    1 AC119749.1
S/G/Y/R/B/O NT_004658AL354988873696971          
S/G/Y/R/B/O NT_004658AL122002874349213          
S/G/Y/R/B/O NT_004658AL356270875486853          
S/G/Y/R/B/O NT_004658AL049597876802543RH644561241.4814237.001246.201 AC068071.4, AL049597.29
S/G/Y/R/B/O NT_004658AL049597876802543RH704481240.96    1 AC068071.4, AL049597.29
S/G/Y/R/B/O NT_004658AL049597877110203RH647681241.4814237.00  1 AC068071.4, AL049597.29
S/G/Y/R/B/O NT_004658AL049597877150173RH646991239.73    1 AL049597.29
S/G/Y/R/B/O NT_004658AL049597877157623RH117841241.06    1 AL049597.29
S/G/Y/R/B/O NT_004658AL355981877761493          
S/G/Y/R/B/O NT_004658AL121989878306173WI-8794    1245.401 AL121989.12
S/G/Y/R/B/O NT_004658AL121989878306173RH638821241.00    1 AL121989.12
S/G/Y/R/B/O NT_004658AL121989878307663WI-16050    1247.301 AL121989.12
S/G/Y/R/B/O NT_004658AL121989878307663RH642161240.96    1 AL121989.12
S/G/Y/R/B/O NT_004658AL121989878312613SGC32731    1245.801 AL121989.12
S/G/Y/R/B/O NT_004658AL121989878312613RH644171240.96    1 AL121989.12
S/G/Y/R/B/O NT_004658AL121989878460843RH1029121242.64    1 AL121989.12
S/G/Y/R/B/O NT_004658AL121989879047583RH707331242.75    1 AL121989.12
S/G/Y/R/B/O NT_004658AC093155879945893RH778881244.91    2 AC093155.2, AL445427.7
S/G/Y/R/B/O NT_004658AC093155880123113RH2499819206.63    4 AC008747.5, AC093155.2, AL445427.7, AL589674.9
S/G/Y/R/B/O NT_004658AC093155880658553RH1020771247.44    2 AC093155.2, AL445427.7
S/G/Y/R/B/O NT_004658AC093155880752283RH693541247.54    2 AC093155.2, AL445427.7
S/G/Y/R/B/O NT_004658AC093155880756833SGC32414    1248.402 AC093155.2, AL445427.7
S/G/Y/R/B/O NT_004658AC093155880756833RH645741247.64    2 AC093155.2, AL445427.7
S/G/Y/R/B/O NT_004658AC093155880774683RH647721247.6414237.00  2 AC093155.2, AL445427.7
S/G/Y/R/B/O NT_004658AL139139881021753RH927481244.17    1 AL139139.9
S/G/Y/R/B/O NT_004658AL139139881360023RH693861244.91    1 AL139139.9
S/G/Y/R/B/O NT_004658AC099062881801581          
S/G/Y/R/B/O NT_004658AC092392882632773WI-3965    1249.401 AC092392.2, AC099062.1
S/G/Y/R/B/O NT_004658AC092392883071413RH37883  14247.00  1 AC092392.2
S/G/Y/R/B/O NT_004658AC092392883104913RH638271244.51  1249.401 AC092392.2, AC104838.2
S/G/Y/R/B/O NT_004658AC092392883122853RH156381244.28    1 AC092392.2, AC104838.2
S/G/Y/R/B/O NT_004658AC092392883123563RH639201243.90    1 AC092392.2, AC104838.2
S/G/Y/R/B/O NT_004658AC092392883123563RH108461247.54    1 AC092392.2, AC104838.2
S/G/Y/R/B/O NT_004658AC092392883136033RH360701245.11    1 AC092392.2, AC104838.2
S/G/Y/R/B/O NT_004658AC092392883141413RH122831245.11    1 AC092392.2, AC104838.2
S/G/Y/R/B/O NT_004658AC104838883503813          
S/G/Y/R/B/O NT_004658AC103552884520763          
S/G/Y/R/B/O NT_004658AC099064885699013          
S/G/Y/R/B/O NT_004658AC024488886194561          
S/G/Y/R/B/O NT_004658AL356103886249143          
S/G/Y/R/B/O NT_004658AL590786887369833          
S/G/Y/R/B/O NT_004658AL445437887659593RH509071247.24  1251.101 AC011793.3, AL445437.4
S/G/Y/R/B/O NT_004658AL445437887659593RH1953  14242.00  1 AC011793.3, AL445437.4
S/G/Y/R/B/O NT_004658AL355144888508553RH154831247.5414242.00  2 AL355144.16
S/G/Y/R/B/O NT_004658AL355144889762793AFM263XF9    1251.101 AL355144.16
S/G/Y/R/B/O NT_004658AC098932889784921          


  NT_004658 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004658AC093432890462431          
S/G/Y/R/B/O NT_004658AL049861892681253WI-10087    1252.801 AL049861.18, AL356436.5
S/G/Y/R/B/O NT_004658AL445438893334863          
S/G/Y/R/B/O NT_004658AC093578895738523WI-7492    1252.801 AC016015.3, AC093578.2
S/G/Y/R/B/O NT_004658AC119426896015083          
S/G/Y/R/B/O NT_004658AL136381896639103RH452331248.94    1 AL136381.12
S/G/Y/R/B/O NT_004658AL136381896639453RH677311247.54    1 AL136381.12
S/G/Y/R/B/O NT_004658AL136381897517883RH270861242.22    1 AL136381.12, AL359825.2
S/G/Y/R/B/O NT_004658AL136381897756703TIGR-A003P14    1251.001 AL136381.12, AL359825.2
S/G/Y/R/B/O NT_004658AL136381897756703RH507471251.60    1 AL136381.12, AL359825.2
S/G/Y/R/B/O NT_004658AL136381897756983RH916641244.17    1 AL136381.12
S/G/Y/R/B/O NT_004658AL445991897951243RH1874  14336.00  1 AL359825.2, AL445991.15
S/G/Y/R/B/O NT_004658AL445991897952643RH126611247.44    1 AL359825.2, AL445991.15
S/G/Y/R/B/O NT_004658AL445991897952683RH708461247.54    1 AL359825.2, AL445991.15
S/G/Y/R/B/O NT_004658AL445991897953983RH506001244.07    1 AL359825.2, AL445991.15
S/G/Y/R/B/O NT_004658AL445991897953983TIGR-A002M34    1261.001 AL359825.2, AL445991.15
S/G/Y/R/B/O NT_004658AL445991898975603RH506231244.51  1251.101 AL139416.4, AL445991.15
S/G/Y/R/B/O NT_004658AL139416899216431RH697041247.44    1 AL139416.4
S/G/Y/R/B/O NT_004658AL139416899226801RH497911244.28    1 AL121573.15, AL139416.4, AL683813.10
S/G/Y/R/B/O NT_004658AL139416899226801TIGR-A004S46    1259.101 AL121573.15, AL139416.4, AL683813.10
S/G/Y/R/B/O NT_004658AL139416899291981RH687081247.44    1 AL139416.4
S/G/Y/R/B/O NT_004658AL139416899490091RH781421251.92    1 AL139416.4
S/G/Y/R/B/O NT_004658AL160008899938113RH931751248.65    2 AL139416.4, AL160008.3, AL691464.4
S/G/Y/R/B/O NT_004658AL160008899945093RH14055  14356.00  1 AL139416.4, AL160008.3
S/G/Y/R/B/O NT_004658AL160008899945093RH496331252.56  1257.301 AL139416.4, AL160008.3
S/G/Y/R/B/O NT_004658AL160008899953933RH642141247.2414373.001252.701 AL139416.4, AL160008.3
S/G/Y/R/B/O NT_004658AC104459900466283RH690301253.16    2 AC079768.8, AC104459.2, AC106878.3
S/G/Y/R/B/O NT_004658AC104459900502813RH691431247.44    1 AC104459.2
S/G/Y/R/B/O NT_004658AC104459901240793RH267381242.43    1 AC021689.3, AC099063.2, AC104459.2
S/G/Y/R/B/O NT_004658AC099063902068171RH661281248.65    1 AC021689.3, AC099063.2
S/G/Y/R/B/O NT_004658AC099063902363601RH642591247.44  1252.801 AC021689.3, AC099063.2
S/G/Y/R/B/O NT_004658 - RH507191242.43    1 AC093423.2, AC099569.2