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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_004350 NT_004321 NT_004547 NT_034374 NT_022058 NT_021917 NT_028054 NT_032967
NT_021937 NT_034375 NT_022041 NT_004873 NT_034376 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_034377 NT_030571 NT_004782 NT_028053 NT_034378
NT_004538 NT_034379 NT_034380 NT_004511 NT_004852 NT_032963 NT_032971 NT_032972
NT_004386 NT_032977 NT_004424 NT_032973 NT_029223 NT_029865 NT_031737 NT_004636
NT_034381 NT_032948 NT_034382 NT_004464 NT_034383 NT_034384 NT_004483 NT_032974
NT_004902 NT_034385 NT_026943 NT_034386 NT_029231 NT_034387 NT_004658 NT_004686
NT_034388 NT_021979 NT_034389 NT_034390 NT_034391 NT_030565 NT_034392 NT_034393
NT_028050 NT_030567 NT_034394 NT_021977 NT_034395 NT_029860 NT_019273 NT_034396
NT_031697 NT_004754 NT_032975 NT_022052 NT_034397 NT_022071 NT_004434 NT_034398
NT_034399 NT_034400 NT_034401 NT_034402 NT_034403 NT_032962 NT_034428 NT_021907
NT_004441 NT_030577 NT_004858 NT_004982 NT_026945 NT_004668 NT_034404 NT_034405
NT_029874 NT_034406 NT_004487 NT_021905 NT_004599 NT_034407 NT_004671 NT_004416
NT_029862 NT_034408 NT_034409 NT_034410 NT_034411 NT_032947 NT_029226 NT_021877
NT_031718 NT_034412 NT_034413 NT_004612 NT_034414 NT_034415 NT_021953 NT_004861
NT_004525 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433 NT_034416
NT_030561 NT_034417 NT_004836 NT_004771 NT_004734 NT_031700 NT_004536 NT_032964
NT_031730 NT_029870 NT_032969 NT_032968 NT_034418


  NT_004612
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004612AL5838262120854863RH269651692.89    1 AL583826.16
S/G/Y/R/B/O NT_004612AL5838262120905163RH476831696.73    1 AL583826.16
S/G/Y/R/B/O NT_004612AL5838262120966093RH476261696.73    1 AL583826.16
S/G/Y/R/B/O NT_004612AL5838262121027253RH710501696.73    1 AC004486.1, AL583826.16
S/G/Y/R/B/O NT_004612AL5838262121027253WI-14762    1846.901 AC004486.1, AL583826.16
S/G/Y/R/B/O NT_004612AL5838262121027363RH260191696.73    1 AC004486.1, AL583826.16, AP001134.2
S/G/Y/R/B/O NT_004612AL7138762121911793          
S/G/Y/R/B/O NT_004612AL5924022121949713          
S/G/Y/R/B/O NT_004612AL5906122123934323          
S/G/Y/R/B/O NT_004612AL5920632123971703WI-11191    1860.701 AL592063.10
S/G/Y/R/B/O NT_004612AC0966392126516711RH753951698.24    1 AC096639.2
S/G/Y/R/B/O NT_004612AC0117002127145853RH30708  18271.00  1 AC096639.2
S/G/Y/R/B/O NT_004612AC0117002127624013RH764131700.58    1 AC011700.5
S/G/Y/R/B/O NT_004612AL6065372128548883RH363701699.23    1 AC011192.2, AL606537.10
S/G/Y/R/B/O NT_004612AL6065372128657633RH14626  18262.00  1 AC011192.2, AL606537.10
S/G/Y/R/B/O NT_004612AL6065372128658053RH787991699.07    1 AC011192.2, AL606537.10
S/G/Y/R/B/O NT_004612AL6065372128680143RH710961699.07    1 AC011192.2, AL606537.10
S/G/Y/R/B/O NT_004612AL6065372128691043RH688651699.23    1 AC011192.2, AL606537.10
S/G/Y/R/B/O NT_004612AL6065372128707853RH501351698.29  1861.401 AC011192.2, AL606537.10
S/G/Y/R/B/O NT_004612AL5922872128852643          
S/G/Y/R/B/O NT_004612AL5901372130733191RH497761698.45  1852.701 AL590137.7
S/G/Y/R/B/O NT_004612AL5901372130749211RH644531699.07  1849.101 AC068586.2, AL590137.7
S/G/Y/R/B/O NT_004612AL5901372130794621RH710971699.07    1 AL590137.7
S/G/Y/R/B/O NT_004612AL5901372131686751RH639301698.24  1853.301 AL590137.7
S/G/Y/R/B/O NT_004612AL5901372131686751RH99101699.13    1 AL590137.7
S/G/Y/R/B/O NT_004612AL5901372131687701RH674721700.27    1 AL590137.7
S/G/Y/R/B/O NT_004612AL6038382131831903RH709261700.27    1 AL590137.7, AL603838.6
S/G/Y/R/B/O NT_004612AL6038382131832113RH759961698.45    1 AL590137.7, AL603838.6
S/G/Y/R/B/O NT_004612AL5922162132178823          
S/G/Y/R/B/O NT_004612AL4453052132917633RH643041699.13  1854.901 AC068586.2, AL445305.11
S/G/Y/R/B/O NT_004612AL4453052133813813D1S237    1851.801 AL445305.11
S/G/Y/R/B/O NT_004612AL4453052133813973RH133601699.1318299.00  1 AL445305.11
S/G/Y/R/B/O NT_004612AL4453052133914173RH654411699.13    1 AL445305.11
S/G/Y/R/B/O NT_004612AL4453052134480683RH175541700.78    1 AL445305.11
S/G/Y/R/B/O NT_004612AL4453052134654183RH502441698.9718304.001859.201 AC044820.3, AL445305.11
S/G/Y/R/B/O NT_004612AL4453052134654233RH165641700.78    1 AC044820.3, AL445305.11
S/G/Y/R/B/O NT_004612AL4453052134682123RH476981700.58    1 AC044820.3, AL445305.11
S/G/Y/R/B/O NT_004612AL4453052134705453RH1744  18299.00  1 AC044820.3, AL445305.11
S/G/Y/R/B/O NT_004612AL4456662134890643RH37952  18319.00  1 AC018590.4, AC044820.3, AL445666.9
S/G/Y/R/B/O NT_004612AL4456662135115613WI-4110    1850.201 AC018590.4, AC044820.3, AL445666.9
S/G/Y/R/B/O NT_004612AC0185902135430731          
S/G/Y/R/B/O NT_004612AC1144962135498391          
S/G/Y/R/B/O NT_004612AC0995632136397473          
S/G/Y/R/B/O NT_004612AL5838302138473213WI-5105    1860.901 AC018971.3, AL583830.7
S/G/Y/R/B/O NT_004612AL5838302138532513CHLC.GATA87F04    1854.901 AC018971.3, AC099675.2, AL583830.7
S/G/Y/R/B/O NT_004612AL5838302138533763CHLC.GATA42A04    1850.201 AC018971.3, AC099675.2, AL583830.7
S/G/Y/R/B/O NT_004612AC0996752138848853          
S/G/Y/R/B/O NT_004612AC0928042140681443RH178301700.78    1 AC092804.2
S/G/Y/R/B/O NT_004612AC0928042140681443RH643711700.68  1850.201 AC092804.2
S/G/Y/R/B/O NT_004612AL4509902141623233          


  NT_004612 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004612AL4511632143350863RH136111702.2918436.00  1 AC066596.2, AL451163.8
S/G/Y/R/B/O NT_004612AL3653152144517233RH646421699.55    1 AC018827.4, AC066596.2, AC092799.2, AL365315.8
S/G/Y/R/B/O NT_004612AL3653152144528983RH639231702.29    1 AC018827.4, AC066596.2, AC092799.2, AL365315.8
S/G/Y/R/B/O NT_004612AL3653152144529343RH710441702.29  1855.101 AC018827.4, AC066596.2, AC092799.2, AL365315.8
S/G/Y/R/B/O NT_004612AC0927992144889973          
S/G/Y/R/B/O NT_004612AL5133052145971583          
S/G/Y/R/B/O NT_004612AL3584522146646803          
S/G/Y/R/B/O NT_004612AL1392592147416663          
S/G/Y/R/B/O NT_004612AC0935812148893593RH484621703.79    1 AC012248.3, AC025993.1, AC093581.2
S/G/Y/R/B/O NT_004612AC1194292150059191RH796271703.82    1 AC021209.4, AC119429.1, AL138782.7
S/G/Y/R/B/O NT_004612AC1194292150293051WI-3484    1850.201 AC021209.4, AC119429.1, AL138782.7
S/G/Y/R/B/O NT_004612AL1387822149460911          
S/G/Y/R/B/O NT_004612 - RH365141697.35    0  
S/G/Y/R/B/O NT_004612 - RH14619  18403.00  1 AL358212.7, AL359924.13
S/G/Y/R/B/O NT_004612 - WI-21720    1850.201 AC025404.2, AC096638.2, AL359456.15
S/G/Y/R/B/O NT_004612 - RH639131696.83    0 AL512449.6
S/G/Y/R/B/O NT_004612 - D1S490    1850.201 AC096634.2
S/G/Y/R/B/O NT_004612 - RH98351700.17    0 AC068586.2
S/G/Y/R/B/O NT_004612 - WI-10788    1850.201 AC096635.2
S/G/Y/R/B/O NT_004612 - D1S227    1850.201 AC096634.2
S/G/Y/R/B/O NT_004612 - WI-9496    1850.201 AC019015.5, AL356008.5, AL390775.10, AL445650.9
S/G/Y/R/B/O NT_004612 - WI-10808    1850.201 AC024505.3
S/G/Y/R/B/O NT_004612 - WI-7576    1850.301 AC025404.2, AC096638.2
S/G/Y/R/B/O NT_004612 - WI-7685    1857.001 AC084393.20, AL035091.2, AL356275.20
S/G/Y/R/B/O NT_004612 - WI-11885    1857.801 AC016454.5, AL391234.10, AL590138.7
S/G/Y/R/B/O NT_004612 - SGC32332    1857.801 AL451077.9, AL591647.14
S/G/Y/R/B/O NT_004612 - SGC38147    1858.301 AC104333.2, AL590124.5
S/G/Y/R/B/O NT_004612 - SGC33582    1858.901 AC084393.20, AL035091.2, AL356275.20, AL365178.8