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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_004350 NT_004321 NT_004547 NT_034374 NT_022058 NT_021917 NT_028054 NT_032967
NT_021937 NT_034375 NT_022041 NT_004873 NT_034376 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_034377 NT_030571 NT_004782 NT_028053 NT_034378
NT_004538 NT_034379 NT_034380 NT_004511 NT_004852 NT_032963 NT_032971 NT_032972
NT_004386 NT_032977 NT_004424 NT_032973 NT_029223 NT_029865 NT_031737 NT_004636
NT_034381 NT_032948 NT_034382 NT_004464 NT_034383 NT_034384 NT_004483 NT_032974
NT_004902 NT_034385 NT_026943 NT_034386 NT_029231 NT_034387 NT_004658 NT_004686
NT_034388 NT_021979 NT_034389 NT_034390 NT_034391 NT_030565 NT_034392 NT_034393
NT_028050 NT_030567 NT_034394 NT_021977 NT_034395 NT_029860 NT_019273 NT_034396
NT_031697 NT_004754 NT_032975 NT_022052 NT_034397 NT_022071 NT_004434 NT_034398
NT_034399 NT_034400 NT_034401 NT_034402 NT_034403 NT_032962 NT_034428 NT_021907
NT_004441 NT_030577 NT_004858 NT_004982 NT_026945 NT_004668 NT_034404 NT_034405
NT_029874 NT_034406 NT_004487 NT_021905 NT_004599 NT_034407 NT_004671 NT_004416
NT_029862 NT_034408 NT_034409 NT_034410 NT_034411 NT_032947 NT_029226 NT_021877
NT_031718 NT_034412 NT_034413 NT_004612 NT_034414 NT_034415 NT_021953 NT_004861
NT_004525 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433 NT_034416
NT_030561 NT_034417 NT_004836 NT_004771 NT_004734 NT_031700 NT_004536 NT_032964
NT_031730 NT_029870 NT_032969 NT_032968 NT_034418


  NT_004525
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004525AC0990652223055841          
S/G/Y/R/B/O NT_004525AC0249982223451931          
S/G/Y/R/B/O NT_004525AL3654382223596981RH503761714.48  1897.502 AC024998.3, AF198096.4, AL365438.9
S/G/Y/R/B/O NT_004525AC0965422226270863RH646521712.89    1 AC021798.5, AC096542.2, AC099065.1
S/G/Y/R/B/O NT_004525AC0965422226272093RH695431712.68    1 AC021798.5, AC096542.2, AC099065.1
S/G/Y/R/B/O NT_004525AC0965422226348153RH462301712.68    1 AC021798.5, AC096542.2, AC099065.1
S/G/Y/R/B/O NT_004525AC0965422226356543RH179861712.68    1 AC021798.5, AC096542.2, AC099065.1
S/G/Y/R/B/O NT_004525AC0965422226403973RH178261712.68    1 AC021798.5, AC096542.2, AC099065.1
S/G/Y/R/B/O NT_004525AC0965422226404023RH8607  18785.00  1 AC021798.5, AC096542.2, AC099065.1
S/G/Y/R/B/O NT_004525AC0965422226404023RH711231711.73    1 AC021798.5, AC096542.2, AC099065.1
S/G/Y/R/B/O NT_004525AL3901222228297983RH646531715.41    1 AC024998.3, AC068290.3, AL390122.16
S/G/Y/R/B/O NT_004525AL3901222228298233RH687121715.51    1 AC024998.3, AC068290.3, AL390122.16
S/G/Y/R/B/O NT_004525AL3901222228306873RH1034851715.51    1 AC024998.3, AC068290.3, AL390122.16
S/G/Y/R/B/O NT_004525AL3901222228322503RH126111715.51    1 AC068290.3, AL390122.16
S/G/Y/R/B/O NT_004525AL3901222228458233RH707351715.51    1 AC068290.3, AC092809.2
S/G/Y/R/B/O NT_004525AC0928092228605333RH1034301715.31    1 AC068290.3, AC092809.2
S/G/Y/R/B/O NT_004525AC0928092228637413RH678331715.41    1 AC068290.3, AC092809.2
S/G/Y/R/B/O NT_004525AC0928092228637553RH452601715.51    1 AC068290.3, AC092809.2
S/G/Y/R/B/O NT_004525AC0928092228747533SGC32477    1897.701 AC068290.3, AC092809.2
S/G/Y/R/B/O NT_004525AC0928092228980943RH42895  18717.00  1 AC068290.3
S/G/Y/R/B/O NT_004525AC0997902230464581RH472441715.41    1 AC099790.1
S/G/Y/R/B/O NT_004525AC0997902230472711RH643071715.41  1897.501 AC099790.1
S/G/Y/R/B/O NT_004525AC0997902230497401RH697141715.41    1 AC099790.1
S/G/Y/R/B/O NT_004525AC0997902230498281RH763871713.53    1 AC099790.1
S/G/Y/R/B/O NT_004525AC0997902230499861RH37948  18800.00  1 AC099790.1
S/G/Y/R/B/O NT_004525AC0997902230558091RH499961715.38  1897.601 AC099790.1
S/G/Y/R/B/O NT_004525AC0997902230558531RH250551715.41    1 AC099790.1
S/G/Y/R/B/O NT_004525AC0997902230558961RH710421713.9518800.001887.101 AC099790.1
S/G/Y/R/B/O NT_004525AC0997902230586971RH990621715.41    1 AC099790.1
S/G/Y/R/B/O NT_004525AC0997902230698181RH703571715.41    1 AC099790.1
S/G/Y/R/B/O NT_004525AC0997902230823891RH162171715.41    1 AC099790.1
S/G/Y/R/B/O NT_004525AC0997902230886281RH683881715.41    1 AC099790.1
S/G/Y/R/B/O NT_004525AC0997902231118511RH365971715.41    1 AC099790.1
S/G/Y/R/B/O NT_004525AC0997902231119411RH676001715.41    1 AC099790.1
S/G/Y/R/B/O NT_004525AC0997902231623531RH695281715.41    1 AC099790.1
S/G/Y/R/B/O NT_004525AC0997902231654471RH122821715.20    1 AC099790.1
S/G/Y/R/B/O NT_004525AC0965372232463071RH617547607.28  7579.902 AC009275.7, AC055757.14, AC073235.4, AC078847.2, AP002452.1
S/G/Y/R/B/O NT_004525AL5963302233664133AFMB361YB5    1897.501 AC012126.3, AC034298.2, AL596330.6
S/G/Y/R/B/O NT_004525AL5963302234100893RH498091715.41  1888.101 AC012126.3, AC034298.2, AL596330.6
S/G/Y/R/B/O NT_004525AL5963302234101153RH120491715.41    1 AC012126.3, AC034298.2, AL596330.6
S/G/Y/R/B/O NT_004525AL3918112234364053RH670671714.27    1 AC012126.3, AC034298.2, AL391811.7
S/G/Y/R/B/O NT_004525AL3918112234381363RH116661715.41    1 AC012126.3, AC034298.2, AL391811.7
S/G/Y/R/B/O NT_004525AL3918112234383033RH123091715.41    1 AC034298.2, AL391811.7
S/G/Y/R/B/O NT_004525AC0935602236559833RH474451716.95    1 AC022922.2, AC093560.2
S/G/Y/R/B/O NT_004525AL5905472237091773RH940641716.95    1 AC022922.2, AC027498.2, AL590547.3
S/G/Y/R/B/O NT_004525AL6457692237353953          
S/G/Y/R/B/O NT_004525AL3579122237878073RH920361716.95    1 AL357912.10
S/G/Y/R/B/O NT_004525AL1627382238871713          
S/G/Y/R/B/O NT_004525AL5961342240068993          
S/G/Y/R/B/O NT_004525AC0928112240722423RH9074  18866.00  1 AC092811.2


  NT_004525 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004525AC0928112240808773RH42817  18866.00  1 AC092811.2
S/G/Y/R/B/O NT_004525AC0928112240823963RH1038211718.55    1 AC092811.2
S/G/Y/R/B/O NT_004525AC0928112240827593RH643981718.55  1888.501 AC092811.2
S/G/Y/R/B/O NT_004525AC0928112240919633RH645161717.05    1 AC092811.2
S/G/Y/R/B/O NT_004525AC0928112241566563RH127671718.55    1 AC092811.2
S/G/Y/R/B/O NT_004525AC0928112241566883RH931821720.39    1 AC092811.2
S/G/Y/R/B/O NT_004525AC0928112241568233RH498471716.93  1897.901 AC092811.2
S/G/Y/R/B/O NT_004525AC0928112241634983RH452871718.55    1 AC092811.2
S/G/Y/R/B/O NT_004525AC0928112241646363RH694211718.55    1 AC092811.2
S/G/Y/R/B/O NT_004525AC0928112241652993RH710461718.45  1897.901 AC092811.2
S/G/Y/R/B/O NT_004525AC0928112241659553RH250161718.55    1 AC092811.2
S/G/Y/R/B/O NT_004525AL3562162242157673RH165701718.55    1 AC025060.3, AL356216.13
S/G/Y/R/B/O NT_004525AL3562162242158113RH267631718.55    1 AC025060.3, AL356216.13
S/G/Y/R/B/O NT_004525AL3562162242597113D1S439    1898.001 AC025060.3, AL356216.13
S/G/Y/R/B/O NT_004525AL3562162242597113RH135361718.5518880.00  1 AC025060.3, AL356216.13
S/G/Y/R/B/O NT_004525AL5913802243365763AFM324XH5    1881.801 AC021778.3, AC025060.3, AL513528.5, AL591380.21
S/G/Y/R/B/O NT_004525AC0990662243391983          
S/G/Y/R/B/O NT_004525AL5918952245096623RH646881718.55    1 AC058782.11, AL591895.9
S/G/Y/R/B/O NT_004525AL5918952245104343RH508341715.51  1887.201 AC058782.11, AL591895.9
S/G/Y/R/B/O NT_004525AL5918952245107163RH684501718.55    1 AC058782.11, AL591895.9
S/G/Y/R/B/O NT_004525AL5918952245120413RH111201718.55    1 AC058782.11, AL591895.9
S/G/Y/R/B/O NT_004525AL5918952245151613RH759481718.55    1 AC013527.3, AC058782.11, AL591895.9
S/G/Y/R/B/O NT_004525AL5918952245151643WI-18957    1877.901 AC013527.3, AC058782.11, AL591895.9
S/G/Y/R/B/O NT_004525AL5918952245151643RH506801723.47    1 AC013527.3, AC058782.11, AL591895.9
S/G/Y/R/B/O NT_004525AL5918952245152443RH751571718.55    1 AC013527.3, AC013547.3, AC058782.11, AL591895.9
S/G/Y/R/B/O NT_004525AL1173482245204303RH710941720.39    1 AC013527.3, AC058782.11, AL117348.26
S/G/Y/R/B/O NT_004525AL1173482245896983WI-20783    1887.701 AC058782.11, AL117348.26
S/G/Y/R/B/O NT_004525AL1173482245896983RH500341721.50    1 AC058782.11, AL117348.26
S/G/Y/R/B/O NT_004525AL1173482245897133RH1225  18897.00  1 AC058782.11, AL117348.26
S/G/Y/R/B/O NT_004525AL1173482245897583RH645821718.55    1 AC058782.11, AL117348.26
S/G/Y/R/B/O NT_004525AL1173482245897933RH644891722.20    1 AC058782.11, AL117348.26
S/G/Y/R/B/O NT_004525AL1332882246556203RH478511718.55    1 AL133288.12
S/G/Y/R/B/O NT_004525AL1332882246917833RH491731716.71    1 AL133288.12
S/G/Y/R/B/O NT_004525AL1332882246917833RH29952  18902.00  1 AL133288.12
S/G/Y/R/B/O NT_004525AL5123432247109053WI-1149    1899.601 AL512343.21
S/G/Y/R/B/O NT_004525AL5123432247204743RH1021681718.55    1 AL512343.21, AL592045.19
S/G/Y/R/B/O NT_004525AL5123432247632853RH500241718.55  1898.001 AC044825.2, AL512343.21, AL592045.19
S/G/Y/R/B/O NT_004525AL5123432247823073RH926921720.28    1 AC044825.2, AL512343.21, AL592045.19
S/G/Y/R/B/O NT_004525AL5123432247971463RH4702117517.05    2 AC027601.15, AC044825.2, AL512343.21, AL592045.19
S/G/Y/R/B/O NT_004525AL5920452248138991RH38133  18907.00  1 AC021883.4, AC044825.2, AL592045.19
S/G/Y/R/B/O NT_004525AL5920452248142171RH696971718.55    1 AC021883.4, AC044825.2, AL592045.19
S/G/Y/R/B/O NT_004525AL5920452248142241RH284981713.84    1 AC021883.4, AC044825.2, AL592045.19
S/G/Y/R/B/O NT_004525AL5920452248150301RH802651720.67    1 AC021883.4, AC044825.2, AL592045.19
S/G/Y/R/B/O NT_004525AC0218832249485901RH1027621718.55    1 AC021883.4
S/G/Y/R/B/O NT_004525AC0218832249631371RH450051718.55    1 AC021883.4
S/G/Y/R/B/O NT_004525AL3597422250775333RH643551718.5518921.001898.001 AL359742.15, AL671974.3
S/G/Y/R/B/O NT_004525AL3597422250775353RH110851718.55    1 AL359742.15, AL671974.3
S/G/Y/R/B/O NT_004525AL3597422250967573RH176871720.57    1 AL359742.15, AL671974.3
S/G/Y/R/B/O NT_004525AL3597042251020193          
S/G/Y/R/B/O NT_004525AL3571222253074793RH1035181718.55    1 AC021762.3, AC026277.4, AL357122.13, AL359982.4


  NT_004525 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004525AL3571222253249573RH643331718.55  1897.501 AC021762.3, AC026277.4, AC073252.1, AL359982.4, AL365444.11
S/G/Y/R/B/O NT_004525AL3654442253252373RH367551718.55    1 AC021762.3, AC026277.4, AC073252.1, AL359982.4, AL365444.11
S/G/Y/R/B/O NT_004525AL3654442253256223RH644181718.55  1898.001 AC021762.3, AC026277.4, AC073252.1, AL359982.4, AL365444.11
S/G/Y/R/B/O NT_004525AL3654442253256603RH508161715.2818910.001885.401 AC021762.3, AC026277.4, AC073252.1, AL359982.4, AL365444.11
S/G/Y/R/B/O NT_004525AL3654442253257953RH645631718.55    1 AC021762.3, AC026277.4, AC073252.1, AL359982.4, AL365444.11
S/G/Y/R/B/O NT_004525AL3654442253485323RH503431715.20  1885.501 AC026277.4, AC073252.1, AL359982.4, AL365444.11
S/G/Y/R/B/O NT_004525AL3654442253485603RH14364  18912.001880.501 AC026277.4, AL359982.4, AL365444.11
S/G/Y/R/B/O NT_004525AL3654442253485603RH502011722.62    1 AC026277.4, AL359982.4, AL365444.11
S/G/Y/R/B/O NT_004525AL3654442253488013RH181131718.55    1 AC026277.4, AC073252.1, AL359982.4, AL365444.11
S/G/Y/R/B/O NT_004525AL3654442253571273RH451181720.39    1 AC026277.4
S/G/Y/R/B/O NT_004525AL3654442254399343RH647161718.55    1 AC073252.1, AL365444.11
S/G/Y/R/B/O NT_004525AL3654442254435693RH460261718.55    1 AL365444.11
S/G/Y/R/B/O NT_004525AL3654442254770783RH915191718.55    1 AC073252.1, AL365444.11
S/G/Y/R/B/O NT_004525AL3597322255584093RH1041361718.55    1 AL359732.11
S/G/Y/R/B/O NT_004525AL3916282256124373RH33627  18917.00  1 AL391628.18
S/G/Y/R/B/O NT_004525AL3916282256127643RH803321718.45    1 AL391628.18
S/G/Y/R/B/O NT_004525AL3536892256934683RH1039231718.55    1 AL353689.26
S/G/Y/R/B/O NT_004525AL3536892257013793RH647031718.55    1 AL353689.26
S/G/Y/R/B/O NT_004525AL3536892257041413RH418761718.45    1 AL353689.26
S/G/Y/R/B/O NT_004525AL3536892257068113RH124541718.45    1 AL353689.26
S/G/Y/R/B/O NT_004525AL3536892257085073RH263771720.57    1 AL353689.26
S/G/Y/R/B/O NT_004525AL3536892257094333RH1226  18925.00  1 AL353689.26
S/G/Y/R/B/O NT_004525AL3536892257095083RH268801718.55    1 AL353689.26
S/G/Y/R/B/O NT_004525AL3536892257095583RH506521718.55  1897.601 AL353689.26
S/G/Y/R/B/O NT_004525AL3536892257095923RH761291718.35    1 AL353689.26
S/G/Y/R/B/O NT_004525AL3536892257243903RH913321716.82    1 AL353689.26
S/G/Y/R/B/O NT_004525AL3536892257727883RH991561718.55    1 AL353689.26
S/G/Y/R/B/O NT_004525AL4510472258778421RH463411722.20    1 AL451047.1
S/G/Y/R/B/O NT_004525AL6273082259483773RH453091718.55    1 AL451047.1, AL627308.20
S/G/Y/R/B/O NT_004525AL6064622260451763          
S/G/Y/R/B/O NT_004525AL4510542261555773          
S/G/Y/R/B/O NT_004525 - RH160261718.55    0  
S/G/Y/R/B/O NT_004525 - WI-4355    1880.802 AL714029.5, AL731702.12
S/G/Y/R/B/O NT_004525 - RH252531713.63    1 AC022505.17, AC084125.4
S/G/Y/R/B/O NT_004525 - WI-11418    1883.401 AL139288.15
S/G/Y/R/B/O NT_004525 - SGC35435    1886.301 AL157880.14, AL158214.33
S/G/Y/R/B/O NT_004525 - WI-15884    1886.601 AL139288.15
S/G/Y/R/B/O NT_004525 - WI-14930    1887.201 AL122003.17
S/G/Y/R/B/O NT_004525 - D1S251    1887.501 AL626763.11
S/G/Y/R/B/O NT_004525 - WI-20744    1887.701 AL670729.18
S/G/Y/R/B/O NT_004525 - WI-16292    1888.401 AL136379.19
S/G/Y/R/B/O NT_004525 - D1S213    1889.700  
S/G/Y/R/B/O NT_004525 - WI-15242    1890.001 AL139288.15
S/G/Y/R/B/O NT_004525 - D1S469    1890.101 AL392172.9
S/G/Y/R/B/O NT_004525 - SGC35003    1891.401 AC055781.3, AL160004.18
S/G/Y/R/B/O NT_004525 - CHLC.GCT1E07    1893.001 AC025079.4, AL078624.24
S/G/Y/R/B/O NT_004525 - WI-15892    1896.601 AC007198.6, AL359979.10
S/G/Y/R/B/O NT_004525 - SGC34788    1897.101 AC026068.5, AL590088.6, AL592148.7
S/G/Y/R/B/O NT_004525 - RH642751715.2818893.001897.900