Home    Genome Browser    BLAT Search    Help
  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_004350 NT_004321 NT_004547 NT_034374 NT_022058 NT_021917 NT_028054 NT_032967
NT_021937 NT_034375 NT_022041 NT_004873 NT_034376 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_034377 NT_030571 NT_004782 NT_028053 NT_034378
NT_004538 NT_034379 NT_034380 NT_004511 NT_004852 NT_032963 NT_032971 NT_032972
NT_004386 NT_032977 NT_004424 NT_032973 NT_029223 NT_029865 NT_031737 NT_004636
NT_034381 NT_032948 NT_034382 NT_004464 NT_034383 NT_034384 NT_004483 NT_032974
NT_004902 NT_034385 NT_026943 NT_034386 NT_029231 NT_034387 NT_004658 NT_004686
NT_034388 NT_021979 NT_034389 NT_034390 NT_034391 NT_030565 NT_034392 NT_034393
NT_028050 NT_030567 NT_034394 NT_021977 NT_034395 NT_029860 NT_019273 NT_034396
NT_031697 NT_004754 NT_032975 NT_022052 NT_034397 NT_022071 NT_004434 NT_034398
NT_034399 NT_034400 NT_034401 NT_034402 NT_034403 NT_032962 NT_034428 NT_021907
NT_004441 NT_030577 NT_004858 NT_004982 NT_026945 NT_004668 NT_034404 NT_034405
NT_029874 NT_034406 NT_004487 NT_021905 NT_004599 NT_034407 NT_004671 NT_004416
NT_029862 NT_034408 NT_034409 NT_034410 NT_034411 NT_032947 NT_029226 NT_021877
NT_031718 NT_034412 NT_034413 NT_004612 NT_034414 NT_034415 NT_021953 NT_004861
NT_004525 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433 NT_034416
NT_030561 NT_034417 NT_004836 NT_004771 NT_004734 NT_031700 NT_004536 NT_032964
NT_031730 NT_029870 NT_032969 NT_032968 NT_034418


  NT_034408
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_034408AL6455041994733883RH943081666.51    1 AC025664.3, AC025664.3, AL645504.10
S/G/Y/R/B/O NT_034408AL6455041994762393RH508471667.19  1825.601 AC025664.3, AL645504.10
S/G/Y/R/B/O NT_034408AL6455041994762393RH114981669.03    1 AC025664.3, AL645504.10
S/G/Y/R/B/O NT_034408AL6455041994782233RH106271669.03    1 AL645504.10
S/G/Y/R/B/O NT_034408AL6455041994782753RH124781669.03    1 AL645504.10
S/G/Y/R/B/O NT_034408AL6455041994782893RH500691666.51  1825.801 AC025664.3, AL645504.10
S/G/Y/R/B/O NT_034408AL6455041994785223RH755861666.51    1 AC025664.3, AL645504.10
S/G/Y/R/B/O NT_034408AL6455041994793353RH285991667.19    1 AC025664.3, AL645504.10
S/G/Y/R/B/O NT_034408AL6455041994797543RH939381666.41    1 AC025664.3, AL645504.10
S/G/Y/R/B/O NT_034408AL6455041995291763RH128051669.03    1 AC025664.3, AL645504.10
S/G/Y/R/B/O NT_034408AL6455041995296623RH174151669.03    1 AL645504.10
S/G/Y/R/B/O NT_034408AL6455041995298203RH263791670.74    1 AL645504.10
S/G/Y/R/B/O NT_034408AL6455041995316073RH688581669.03    1 AC025664.3, AL645504.10
S/G/Y/R/B/O NT_034408AL6455041995345373RH501961666.51    1 AC025664.3, AL513217.11, AL645504.10
S/G/Y/R/B/O NT_034408AL6455041995345373WI-16776    1825.201 AC025664.3, AL513217.11, AL645504.10
S/G/Y/R/B/O NT_034408AL5132171995365643RH644011666.41    1 AC025664.3, AL513217.11
S/G/Y/R/B/O NT_034408AL5132171995365643WI-14888    1821.601 AC025664.3, AL513217.11
S/G/Y/R/B/O NT_034408AL5132171995366253RH182721670.74    1 AC025664.3, AL513217.11
S/G/Y/R/B/O NT_034408AL5132171995370713RH663131666.51    1 AC025664.3, AL513217.11
S/G/Y/R/B/O NT_034408AL5132171995451693RH258481666.51    1 AC025664.3, AL513217.11
S/G/Y/R/B/O NT_034408AL5132171995452273RH263531669.03    1 AC025664.3, AL513217.11
S/G/Y/R/B/O NT_034408AL5132171995496813RH503651666.4117705.001825.301 AC025664.3, AL513217.11
S/G/Y/R/B/O NT_034408AL5132171995497823RH708341669.03    1 AC025664.3, AL513217.11
S/G/Y/R/B/O NT_034408AC0996761996228851RH637971666.41  1825.301 AC099676.2
S/G/Y/R/B/O NT_034408AC0996761996231961RH678231669.03    1 AC099676.2
S/G/Y/R/B/O NT_034408AC0996761996235051RH124721666.41    1 AC099676.2
S/G/Y/R/B/O NT_034408AC0996761996590981RH643861666.41  1825.601 AC099676.2
S/G/Y/R/B/O NT_034408AC0996761996685241RH759231670.95    1 AC099676.2, AL691482.15
S/G/Y/R/B/O NT_034408AC0996761996687661RH182171669.03    1 AC099676.2, AL691482.15
S/G/Y/R/B/O NT_034408AC0996761996699511RH469141666.51    1 AC099676.2, AL691482.15
S/G/Y/R/B/O NT_034408AL6914821997054672          
S/G/Y/R/B/O NT_034408AL5923001997825363RH1036921666.51    1 AL592300.16, AL645796.1
S/G/Y/R/B/O NT_034408AL5923001998002273RH932151667.19    1 AL592300.16, AL645796.1
S/G/Y/R/B/O NT_034408AL5923001998002313RH710871666.5117704.00  1 AL592300.16, AL645796.1
S/G/Y/R/B/O NT_034408AL5923001998004663RH681921667.19    1 AL592300.16, AL645796.1
S/G/Y/R/B/O NT_034408AL3569531999598753RH646131666.41    1 AC074007.1, AL356953.17
S/G/Y/R/B/O NT_034408AL3569531999726093RH1026791667.08    1 AC074007.1, AL356953.17
S/G/Y/R/B/O NT_034408AL3569531999849593RH14662  17704.001825.601 AC074007.1, AL356953.17
S/G/Y/R/B/O NT_034408AL3569531999849593RH710601671.05    1 AC074007.1, AL356953.17
S/G/Y/R/B/O NT_034408AL3569531999871433RH644031669.03  1825.601 AC074007.1, AL356953.17
S/G/Y/R/B/O NT_034408AL5897622000145393RH38203  17704.00  1 AC074007.1, AL589762.16
S/G/Y/R/B/O NT_034408AL5897622000145713RH705081670.77    1 AC074007.1, AL589762.16
S/G/Y/R/B/O NT_034408AL5897622000146213RH912331672.28    1 AC074007.1, AL589762.16
S/G/Y/R/B/O NT_034408AL5897622000148413RH810471673.53    1 AC074007.1, AL589762.16
S/G/Y/R/B/O NT_034408AL5897622000513593RH1042731671.05    2 AC013734.4, AC074007.1, AL589762.16
S/G/Y/R/B/O NT_034408AL5897622000642463RH807221670.95    1 AC074007.1, AL589762.16
S/G/Y/R/B/O NT_034408AC0993362001250123RH502001554.27  1671.804 AL358472.54
S/G/Y/R/B/O NT_034408AC0993362002138303RH688891671.25    1 AC015973.2, AC053522.1, AC099336.2
S/G/Y/R/B/O NT_034408AC0993362002146393RH499701670.74    1 AC015973.2, AC053522.1, AC099336.2
S/G/Y/R/B/O NT_034408AC0993362002146393WI-16437    1826.901 AC015973.2, AC053522.1, AC099336.2


  NT_034408 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_034408AC0993362002412233RH646741672.28    1 AC015973.2, AC053522.1, AC099336.2, AC118556.1
S/G/Y/R/B/O NT_034408AC0993362002413303RH178281670.74    1 AC015973.2, AC053522.1, AC099336.2
S/G/Y/R/B/O NT_034408AC0993362002413943RH1045161670.7417704.00  1 AC015973.2, AC053522.1, AC099336.2
S/G/Y/R/B/O NT_034408AC1185562002438101RH711361670.77    2 AC015973.2, AC053522.1, AC118556.1, AC124915.1
S/G/Y/R/B/O NT_034408AC1185562002438101NIB1035    1826.702 AC015973.2, AC053522.1, AC118556.1, AC124915.1
S/G/Y/R/B/O NT_034408AC1185562002438101RH639341672.28    2 AC015973.2, AC053522.1, AC118556.1, AC124915.1
S/G/Y/R/B/O NT_034408AC1185562002438101RH100561666.51    2 AC015973.2, AC053522.1, AC118556.1, AC124915.1
S/G/Y/R/B/O NT_034408AC1185562002438701RH250761666.51    2 AC015973.2, AC053522.1, AC118556.1
S/G/Y/R/B/O NT_034408AC1185562002453981RH270011666.51    2 AC015973.2, AC053522.1, AC118556.1
S/G/Y/R/B/O NT_034408AC1044632003777263RH809141671.05    1 AC104463.2
S/G/Y/R/B/O NT_034408AC1044632003806393RH645771672.28    1 AC104463.2
S/G/Y/R/B/O NT_034408AC1044632003806643RH122891670.77    1 AC104463.2
S/G/Y/R/B/O NT_034408AC1044632003814093RH644201666.51    1 AC104463.2
S/G/Y/R/B/O NT_034408AC1044632003814093WI-14579    1826.901 AC104463.2
S/G/Y/R/B/O NT_034408AC1044632003831103RH14653  17704.00  1 AC104463.2
S/G/Y/R/B/O NT_034408AC1044632003831103RH644341672.28  1826.901 AC104463.2
S/G/Y/R/B/O NT_034408 - RH926801670.77    0