Chromosome 1 - RH Maps - Single Contig

Chromosome 1 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_004350	NT_004321	NT_004547	NT_034374	NT_022058	NT_021917	NT_028054	NT_032967
NT_021937	NT_034375	NT_022041	NT_004873	NT_034376	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_034377	NT_030571	NT_004782	NT_028053	NT_034378
NT_004538	NT_034379	NT_034380	NT_004511	NT_004852	NT_032963	NT_032971	NT_032972
NT_004386	NT_032977	NT_004424	NT_032973	NT_029223	NT_029865	NT_031737	NT_004636
NT_034381	NT_032948	NT_034382	NT_004464	NT_034383	NT_034384	NT_004483	NT_032974
NT_004902	NT_034385	NT_026943	NT_034386	NT_029231	NT_034387	NT_004658	NT_004686
NT_034388	NT_021979	NT_034389	NT_034390	NT_034391	NT_030565	NT_034392	NT_034393
NT_028050	NT_030567	NT_034394	NT_021977	NT_034395	NT_029860	NT_019273	NT_034396
NT_031697	NT_004754	NT_032975	NT_022052	NT_034397	NT_022071	NT_004434	NT_034398
NT_034399	NT_034400	NT_034401	NT_034402	NT_034403	NT_032962	NT_034428	NT_021907
NT_004441	NT_030577	NT_004858	NT_004982	NT_026945	NT_004668	NT_034404	NT_034405
NT_029874	NT_034406	NT_004487	NT_021905	NT_004599	NT_034407	NT_004671	NT_004416
NT_029862	NT_034408	NT_034409	NT_034410	NT_034411	NT_032947	NT_029226	NT_021877
NT_031718	NT_034412	NT_034413	NT_004612	NT_034414	NT_034415	NT_021953	NT_004861
NT_004525	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433	NT_034416
NT_030561	NT_034417	NT_004836	NT_004771	NT_004734	NT_031700	NT_004536	NT_032964
NT_031730	NT_029870	NT_032969	NT_032968	NT_034418

NT_021877

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	All Accessions
S/G/Y/R/B/O	NT_021877	AL161736	205237858	3	RH1289			1	5645.00			2	AL161736.32, AL358175.18
S/G/Y/R/B/O	NT_021877	AL161736	205257360	3	RH49933	1	682.48			1	838.50	1	AL161736.32
S/G/Y/R/B/O	NT_021877	AL161736	205283778	3	RH46481	1	682.41					1	AL161736.32
S/G/Y/R/B/O	NT_021877	AL161736	205288062	3	RH64606	1	682.41					1	AL161736.32
S/G/Y/R/B/O	NT_021877	AL161736	205289108	3	RH49974	1	682.48			1	838.50	1	AL161736.32
S/G/Y/R/B/O	NT_021877	AL161736	205289156	3	RH25070	1	682.00					1	AL161736.32
S/G/Y/R/B/O	NT_021877	AL161736	205289192	3	RH64549	1	682.48					1	AL161736.32
S/G/Y/R/B/O	NT_021877	AL161736	205296063	3	RH64614	1	682.48					1	AL161736.32
S/G/Y/R/B/O	NT_021877	AL161736	205297318	3	RH66387	1	681.27					1	AL161736.32
S/G/Y/R/B/O	NT_021877	AL161736	205297452	3	RH25163	1	682.48					1	AL161736.32
S/G/Y/R/B/O	NT_021877	AL354681	205329668	3	RH25371	1	682.48					1	AL354681.8
S/G/Y/R/B/O	NT_021877	AL354681	205329868	3	RH70483	1	682.48					1	AL354681.8
S/G/Y/R/B/O	NT_021877	AL354681	205329878	3	RH75419	1	681.85					1	AL354681.8
S/G/Y/R/B/O	NT_021877	AL354681	205337724	3	AFM165XH10					1	836.40	1	AL354681.8
S/G/Y/R/B/O	NT_021877	AL354681	205402422	3	RH98662	1	682.41					1	AL354681.8, AL359970.10
S/G/Y/R/B/O	NT_021877	AL591846	205422285	3	RH71110	1	682.48	1	8058.00			1	AL591846.15
S/G/Y/R/B/O	NT_021877	AL591846	205426886	3	RH67831	1	682.41					1	AL591846.15
S/G/Y/R/B/O	NT_021877	AL591846	205467633	3	RH98487	1	682.48					1	AL591846.15
S/G/Y/R/B/O	NT_021877	AL591846	205481125	3	RH49946	1	682.41			1	837.40	1	AL591846.15
S/G/Y/R/B/O	NT_021877	AL591846	205550683	3	RH33305			1	8058.00			1	AL445652.6, AL591846.15
S/G/Y/R/B/O	NT_021877	AL591846	205550683	3	RH64408	1	682.31			1	837.40	1	AL445652.6, AL591846.15
S/G/Y/R/B/O	NT_021877	AL591846	205550683	3	RH70191	1	682.48					1	AL445652.6, AL591846.15
S/G/Y/R/B/O	NT_021877	AL591846	205565355	3	RH1838			1	8045.00			1	AL445652.6, AL445993.10, AL591846.15
S/G/Y/R/B/O	NT_021877	AL591846	205565355	3	RH71079	1	682.41					1	AL445652.6, AL445993.10, AL591846.15
S/G/Y/R/B/O	NT_021877	AL591846	205565849	3	RH70252	1	682.48					1	AL445652.6, AL445993.10, AL591846.15
S/G/Y/R/B/O	NT_021877	AL591846	205567352	3	RH63857	1	682.31			1	837.40	1	AL445652.6, AL591846.15
S/G/Y/R/B/O	NT_021877	AL513315	205601258	3	RH69145	1	682.48					1	AC068122.3, AL445652.6, AL513315.15
S/G/Y/R/B/O	NT_021877	AL513315	205661877	3	RH102774	1	682.37					1	AC068122.3, AL445652.6, AL513315.15
S/G/Y/R/B/O	NT_021877	AL513315	205675957	3	RH48337	1	682.37					1	AC068122.3, AL445652.6, AL513315.15
S/G/Y/R/B/O	NT_021877	AC098935	205736797	3	RH18003	1	682.48					1	AC023534.3, AC027719.1, AC068122.3, AC098935.2
S/G/Y/R/B/O	NT_021877	AC098935	205751797	3	RH49341	1	682.48					1	AC023534.3, AC068122.3, AC098935.2
S/G/Y/R/B/O	NT_021877	AC098935	205761787	3	RH44648	1	684.13					1	AC023534.3, AC068122.3, AC098935.2
S/G/Y/R/B/O	NT_021877	AC098935	205761787	3	RH69956	1	684.13					1	AC023534.3, AC068122.3, AC098935.2
S/G/Y/R/B/O	NT_021877	AC098935	205763183	3	RH71102	1	684.23	1	8074.00			1	AC023534.3, AC068122.3, AC098935.2
S/G/Y/R/B/O	NT_021877	AC098935	205763334	3	RH69104	1	684.23					1	AC023534.3, AC068122.3, AC098935.2
S/G/Y/R/B/O	NT_021877	AC098935	205789740	3	RH65597	1	684.13					1	AC023534.3, AC098935.2
S/G/Y/R/B/O	NT_021877	AC098935	205851786	3	RH50261	1	684.21	1	8074.00			1	AC023534.3, AC098935.2
S/G/Y/R/B/O	NT_021877	AC098935	205851786	3	SGC34392					1	838.00	1	AC023534.3, AC098935.2
S/G/Y/R/B/O	NT_021877	AC098935	205851821	3	RH26415	1	686.04					1	AC023534.3, AC098935.2
S/G/Y/R/B/O	NT_021877	AL589672	205873801	3
S/G/Y/R/B/O	NT_021877	AL445493	205897021	3	RH49336	1	686.04					1	AC023534.3, AL445493.8
S/G/Y/R/B/O	NT_021877	AL445493	205908430	3	RH69501	1	684.23					1	AC023534.3, AL445493.8
S/G/Y/R/B/O	NT_021877	AL445493	205910460	3	RH46254	1	683.93					1	AC023534.3, AL445493.8
S/G/Y/R/B/O	NT_021877	AL445493	205910787	3	RH92892	1	686.04					1	AC023534.3, AL445493.8
S/G/Y/R/B/O	NT_021877	AL445493	205910896	3	RH91908	1	686.04					1	AC023534.3, AL445493.8
S/G/Y/R/B/O	NT_021877	AL445493	205926265	3	RH67437	1	684.23					1	AL445493.8
S/G/Y/R/B/O	NT_021877	AL445493	205927065	3	RH36264	1	686.04					1	AL445493.8
S/G/Y/R/B/O	NT_021877	AL445493	205927065	3	RH68537	1	684.23					1	AL445493.8
S/G/Y/R/B/O	NT_021877	AL445493	205929927	3	RH36383	1	686.04					1	AL445493.8
S/G/Y/R/B/O	NT_021877	AL445493	205933068	3	RH69004	1	684.23					1	AL445493.8

NT_021877 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	All Accessions
S/G/Y/R/B/O	NT_021877	AL445493	205960274	3	RH63859	1	684.11			1	838.50	1	AL445493.8
S/G/Y/R/B/O	NT_021877	AL445493	205977812	3	RH37756			1	8064.00			1	AL445493.8
S/G/Y/R/B/O	NT_021877	AL445493	205977900	3	RH11615	1	686.04					1	AL445493.8
S/G/Y/R/B/O	NT_021877	AL445493	205982269	3	RH71112	1	686.04					1	AC068478.3, AC114766.5, AL445493.8
S/G/Y/R/B/O	NT_021877	AL596218	206158644	3	RH11101	1	687.84					1	AC010829.6, AC031978.6, AL355527.3, AL596218.4
S/G/Y/R/B/O	NT_021877	AL391597	206170770	3	RH104255	1	686.14					1	AC031978.6, AL355527.3, AL391597.15
S/G/Y/R/B/O	NT_021877	AL391597	206185192	3	RH67952	1	684.23					1	AC031978.6, AL355527.3, AL391597.15
S/G/Y/R/B/O	NT_021877	AL391597	206192846	3	RH37876			1	8069.00			1	AC031978.6, AL355527.3, AL391597.15
S/G/Y/R/B/O	NT_021877	AL391597	206192874	3	RH1902			1	8074.00			1	AC031978.6, AL391597.15
S/G/Y/R/B/O	NT_021877	AL391597	206192954	3	RH64309	1	686.04					1	AC031978.6, AL391597.15
S/G/Y/R/B/O	NT_021877	AL391597	206192954	3	WI-17154					1	838.40	1	AC031978.6, AL391597.15
S/G/Y/R/B/O	NT_021877	AL391597	206193304	3	RH67915	1	684.23					1	AL355527.3, AL391597.15
S/G/Y/R/B/O	NT_021877	AL391597	206193427	3	RH50056	1	686.04			1	838.50	1	AL355527.3, AL391597.15
S/G/Y/R/B/O	NT_021877	AL391597	206231255	3	AFMB336WA9					1	838.50	1	AC031978.6, AL391597.15, AL691452.8
S/G/Y/R/B/O	NT_021877	AL691452	206322412	2	RH69106	1	684.23					1	AL160003.16, AL691452.8
S/G/Y/R/B/O	NT_021877	AL691452	206344857	2	RH64438	1	686.04			1	838.50	2	AL137789.11, AL160003.16, AL691452.8
S/G/Y/R/B/O	NT_021877	AL691452	206367568	2	RH71065	1	686.04	1	8079.00	1	838.50	2	AL160003.16, AL691452.8, AL691452.8, AL691452.8
S/G/Y/R/B/O	NT_021877	AL691452	206367731	2	RH11128	1	687.88					2	AL160003.16, AL691452.8, AL691452.8, AL691452.8
S/G/Y/R/B/O	NT_021877	AL691452	206384664	2	RH71065	1	686.04	1	8079.00	1	838.50	2	AL160003.16, AL691452.8, AL691452.8, AL691452.8
S/G/Y/R/B/O	NT_021877	AL691452	206384827	2	RH11128	1	687.88					2	AL160003.16, AL691452.8, AL691452.8, AL691452.8
S/G/Y/R/B/O	NT_021877	AL137789	206454123	3	RH71067	1	686.04					1	AL137789.11
S/G/Y/R/B/O	NT_021877	AL137789	206454123	3	SGC35375					1	837.70	1	AL137789.11
S/G/Y/R/B/O	NT_021877	AL137789	206467323	3	RH11102	1	687.84					1	AL137789.11
S/G/Y/R/B/O	NT_021877	AL137789	206498606	3	RH64438	1	686.04			1	838.50	2	AL137789.11, AL160003.16, AL691452.8
S/G/Y/R/B/O	NT_021877	AL137789	206501558	3	RH69734	1	682.37					1	AL137789.11
S/G/Y/R/B/O	NT_021877	AL137789	206526072	3	RH68779	1	686.14					1	AL137789.11
S/G/Y/R/B/O	NT_021877	AL365178	206581212	1	RH36429	1	686.04					1	AC084393.20, AL365178.8
S/G/Y/R/B/O	NT_021877	AL365178	206582099	1	RH64721	1	683.93					1	AC084393.20, AL365178.8
S/G/Y/R/B/O	NT_021877	AL035209	206608222	3	RH71078	1	687.84	1	8079.00			1	AC084393.20, AL035209.1, AL365178.8
S/G/Y/R/B/O	NT_021877	AL035209	206609721	3	RH69587	1	687.84					1	AC084393.20, AL035209.1, AL365178.8
S/G/Y/R/B/O	NT_021877	AL035209	206609930	3	RH71086	1	687.84	1	8079.00			1	AC084393.20, AL035209.1, AL365178.8
S/G/Y/R/B/O	NT_021877	AL035209	206609943	3	RH12404	1	687.88					1	AC084393.20, AL035209.1, AL365178.8
S/G/Y/R/B/O	NT_021877	AL035209	206616173	3	RH80636	1	681.64					1	AC084393.20, AL035209.1, AL365178.8
S/G/Y/R/B/O	NT_021877	AL035209	206616183	3	RH45389	1	687.84					1	AC084393.20, AL035209.1, AL365178.8
S/G/Y/R/B/O	NT_021877	AL035209	206616414	3	RH98868	1	687.84					1	AC084393.20, AL035209.1, AL365178.8
S/G/Y/R/B/O	NT_021877	AL356275	206680159	3	RH49313	1	687.84					1	AL035091.2
S/G/Y/R/B/O	NT_021877	AL356275	206690304	3	RH49912	1	689.22	1	8072.00			1	AC084393.20, AL035091.2, AL356275.20, AL365178.8
S/G/Y/R/B/O	NT_021877	AL356275	206690304	3	SGC33582					1	858.90	1	AC084393.20, AL035091.2, AL356275.20, AL365178.8
S/G/Y/R/B/O	NT_021877	AL356275	206690304	3	RH35959	1	689.22					1	AC084393.20, AL035091.2, AL356275.20, AL365178.8
S/G/Y/R/B/O	NT_021877	AL356275	206701169	3	RH49840	1	688.60					1	AC084393.20, AL035091.2, AL356275.20
S/G/Y/R/B/O	NT_021877	AL356275	206701169	3	WI-7685					1	857.00	1	AC084393.20, AL035091.2, AL356275.20
S/G/Y/R/B/O	NT_021877	AL356275	206701169	3	RH69685	1	689.26					1	AC084393.20, AL035091.2, AL356275.20, AL365178.8
S/G/Y/R/B/O	NT_021877	AL356275	206701267	3	RH70214	1	689.26					1	AC084393.20, AL035091.2, AL356275.20, AL365178.8
S/G/Y/R/B/O	NT_021877	AL356275	206836898	3	RH63945	1	689.26					1	AL035091.2, AL158017.4, AL356275.20
S/G/Y/R/B/O	NT_021877	AL356275	206838119	3	RH70114	1	689.26					1	AL158017.4, AL356275.20
S/G/Y/R/B/O	NT_021877	AL356275	206838191	3	RH64633	1	689.26					1	AL158017.4, AL356275.20
S/G/Y/R/B/O	NT_021877	AL356275	206841561	3	RH99093	1	689.26					1	AL158017.4, AL356275.20
S/G/Y/R/B/O	NT_021877	AL590138	206894998	3	RH64741	1	689.26					1	AL158017.4, AL590138.7
S/G/Y/R/B/O	NT_021877	AL590138	206895138	3	RH64525	1	689.26					1	AL158017.4, AL590138.7
S/G/Y/R/B/O	NT_021877	AL590138	206994812	3	RH63806	1	689.26					1	AC016454.5, AL391234.10, AL590138.7

NT_021877 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	All Accessions
S/G/Y/R/B/O	NT_021877	AL590138	206994812	3	WI-11885					1	857.80	1	AC016454.5, AL391234.10, AL590138.7
S/G/Y/R/B/O	NT_021877	AL606753	207093713	3	RH49256	1	689.26	1	8094.00			1	AC016454.5, AL606753.12
S/G/Y/R/B/O	NT_021877	AL662918	207101131	3
S/G/Y/R/B/O	NT_021877	AC096674	207239468	3	WI-11242					1	841.00	1	AC010734.5, AC026276.3, AC096674.3
S/G/Y/R/B/O	NT_021877	AL451184	207364018	3
S/G/Y/R/B/O	NT_021877	AC099793	207421050	3	RH64325	1	687.84			1	839.50	1	AC099793.2
S/G/Y/R/B/O	NT_021877	AC093421	207567506	3
S/G/Y/R/B/O	NT_021877	AL445254	207751480	3
S/G/Y/R/B/O	NT_021877	AC104465	207757827	1
S/G/Y/R/B/O	NT_021877	AC118560	207892295	3
S/G/Y/R/B/O	NT_021877	AC092810	207960265	3	WI-2534					1	841.70	1	AC092810.2
S/G/Y/R/B/O	NT_021877	AL589741	208085542	3
S/G/Y/R/B/O	NT_021877	AL035408	208245246	3	RH68246	1	691.06					1	AL035408.5
S/G/Y/R/B/O	NT_021877	AL035408	208245279	3	RH17102	1	691.06					1	AL035408.5
S/G/Y/R/B/O	NT_021877	AL035408	208246016	3	RH2303	1	692.78			1	842.20	1	AL035408.5
S/G/Y/R/B/O	NT_021877	AL035408	208246016	3	RH877			1	8109.00			1	AL035408.5
S/G/Y/R/B/O	NT_021877	AL023754	208356923	3	RH29948			1	8118.00			1	AL023754.1
S/G/Y/R/B/O	NT_021877	AL023754	208382601	3	D1S491					1	842.30	1	AL023754.1
S/G/Y/R/B/O	NT_021877	AL023754	208382601	3	RH13656	1	691.06	1	8113.00			1	AL023754.1
S/G/Y/R/B/O	NT_021877	AL023754	208427842	3	RH68249	1	691.06					1	AL023754.1
S/G/Y/R/B/O	NT_021877	AL031316	208488938	3	RH71085	1	691.06	1	8159.00			1	AL031316.2
S/G/Y/R/B/O	NT_021877	AL031316	208489079	3	RH71108	1	691.06	1	8133.00			1	AL031316.2
S/G/Y/R/B/O	NT_021877	AL031316	208489090	3	RH69169	1	691.06					1	AL031316.2
S/G/Y/R/B/O	NT_021877	AL031316	208519645	3	RH11103	1	691.06					1	AL031316.2
S/G/Y/R/B/O	NT_021877	AL022398	208547572	3	RH69177	1	691.06					1	AL022398.1
S/G/Y/R/B/O	NT_021877	AL022398	208592357	3	RH98355	1	687.94					1	AL022398.1
S/G/Y/R/B/O	NT_021877	AL022398	208598636	3	RH75269	1	681.48					2	AC026199.4, AC066585.5, AC069247.5, AL022398.1
S/G/Y/R/B/O	NT_021877	AL022398	208598711	3	RH98921	1	689.26					1	AL022398.1
S/G/Y/R/B/O	NT_021877	AL022398	208649991	3	RH65792	1	689.22					1	AL022398.1
S/G/Y/R/B/O	NT_021877	AL022398	208664500	3	RH69476	1	689.26					1	AL022398.1
S/G/Y/R/B/O	NT_021877	AL022398	208664763	3	RH103906	1	689.26					1	AL022398.1
S/G/Y/R/B/O	NT_021877	AL022728	208669788	3
S/G/Y/R/B/O	NT_021877	AL035046	208696212	3
S/G/Y/R/B/O	NT_021877	AL022399	208750448	3	RH897			1	8176.00			1	AL022399.2
S/G/Y/R/B/O	NT_021877	AL022397	208845204	3	RH102153	1	689.26					1	AL022397.1, AL355335.4
S/G/Y/R/B/O	NT_021877	AL513263	208909650	3
S/G/Y/R/B/O	NT_021877	AL035414	209044478	3	RH102282	1	689.26					1	AL035414.30, AL356960.6, AL360077.3
S/G/Y/R/B/O	NT_021877	AL035414	209050922	3	RH69882	1	689.16					1	AL035414.30, AL356960.6, AL360077.3
S/G/Y/R/B/O	NT_021877	AL035414	209055311	3	RH92965	1	689.33					1	AL035414.30, AL356960.6, AL360077.3
S/G/Y/R/B/O	NT_021877	AL035414	209055833	3	RH49968	1	689.33			1	841.00	1	AL035414.30, AL356960.6, AL360077.3
S/G/Y/R/B/O	NT_021877	AL035414	209056727	3	RH92523	1	688.50					1	AL035414.30, AL356960.6, AL360077.3
S/G/Y/R/B/O	NT_021877	AL035414	209057845	3	WI-4396					1	863.00	1	AL035414.30, AL356960.6, AL360077.3
S/G/Y/R/B/O	NT_021877	AL035414	209058897	3	RH50756	1	689.33			1	841.00	1	AL356960.6, AL360077.3
S/G/Y/R/B/O	NT_021877	AL035414	209103984	3	RH65550	1	693.19					1	AL035414.30, AL356960.6
S/G/Y/R/B/O	NT_021877	AL034351	209162443	3
S/G/Y/R/B/O	NT_021877	AL590653	209300021	3
S/G/Y/R/B/O	NT_021877		-		RH16330	1	686.04					0
S/G/Y/R/B/O	NT_021877		-		WI-10407					1	840.00	0
S/G/Y/R/B/O	NT_021877		-		RH48497	1	693.19					0
S/G/Y/R/B/O	NT_021877		-		RH50659	1	686.04	1	8074.00			0

NT_021877 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_021877		-		RH70129	1	683.31					0