Chromosome 1 - RH Maps - Single Contig

Chromosome 1 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_004350	NT_004321	NT_004547	NT_034374	NT_022058	NT_021917	NT_028054	NT_032967
NT_021937	NT_034375	NT_022041	NT_004873	NT_034376	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_034377	NT_030571	NT_004782	NT_028053	NT_034378
NT_004538	NT_034379	NT_034380	NT_004511	NT_004852	NT_032963	NT_032971	NT_032972
NT_004386	NT_032977	NT_004424	NT_032973	NT_029223	NT_029865	NT_031737	NT_004636
NT_034381	NT_032948	NT_034382	NT_004464	NT_034383	NT_034384	NT_004483	NT_032974
NT_004902	NT_034385	NT_026943	NT_034386	NT_029231	NT_034387	NT_004658	NT_004686
NT_034388	NT_021979	NT_034389	NT_034390	NT_034391	NT_030565	NT_034392	NT_034393
NT_028050	NT_030567	NT_034394	NT_021977	NT_034395	NT_029860	NT_019273	NT_034396
NT_031697	NT_004754	NT_032975	NT_022052	NT_034397	NT_022071	NT_004434	NT_034398
NT_034399	NT_034400	NT_034401	NT_034402	NT_034403	NT_032962	NT_034428	NT_021907
NT_004441	NT_030577	NT_004858	NT_004982	NT_026945	NT_004668	NT_034404	NT_034405
NT_029874	NT_034406	NT_004487	NT_021905	NT_004599	NT_034407	NT_004671	NT_004416
NT_029862	NT_034408	NT_034409	NT_034410	NT_034411	NT_032947	NT_029226	NT_021877
NT_031718	NT_034412	NT_034413	NT_004612	NT_034414	NT_034415	NT_021953	NT_004861
NT_004525	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433	NT_034416
NT_030561	NT_034417	NT_004836	NT_004771	NT_004734	NT_031700	NT_004536	NT_032964
NT_031730	NT_029870	NT_032969	NT_032968	NT_034418

NT_029865

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	All Accessions
S/G/Y/R/B/O	NT_029865	AC096535	60092404	1
S/G/Y/R/B/O	NT_029865	AL035416	60132680	3
S/G/Y/R/B/O	NT_029865	AC113175	60264158	3	RH64793	1	166.99					1	AC068202.2, AC113175.2
S/G/Y/R/B/O	NT_029865	AC113175	60264158	3	RH8846			1	2823.00			1	AC068202.2, AC113175.2
S/G/Y/R/B/O	NT_029865	AC113175	60264176	3	RH63783	1	166.99			1	194.10	1	AC068202.2, AC113175.2
S/G/Y/R/B/O	NT_029865	AC113175	60267002	3	RH1383			1	2823.00			1	AC068202.2, AC113175.2
S/G/Y/R/B/O	NT_029865	AC113175	60267290	3	RH50143	1	165.38			1	197.90	1	AC068202.2, AC113175.2
S/G/Y/R/B/O	NT_029865	AC113175	60284653	3	RH71036	1	165.56			1	198.60	1	AC068202.2, AC113175.2
S/G/Y/R/B/O	NT_029865	AL445285	60379468	3	RH49246	1	168.60					1	AC009678.4, AL356572.5, AL445285.10
S/G/Y/R/B/O	NT_029865	AC097066	60379845	3
S/G/Y/R/B/O	NT_029865	AL603765	60613550	3	WI-4455					1	192.60	1	AC021913.4, AL603765.6
S/G/Y/R/B/O	NT_029865	AC026608	60704027	1
S/G/Y/R/B/O	NT_029865	AL603844	60746400	3	WI-5642					1	210.10	1	AC026608.2, AL355808.9, AL603844.7
S/G/Y/R/B/O	NT_029865	AL606803	60932187	3
S/G/Y/R/B/O	NT_029865	AC105276	60984226	3
S/G/Y/R/B/O	NT_029865	AC099792	61215629	3	D1S203					1	196.30	1	AC016857.6, AC058796.1, AC099792.2, AL355795.13
S/G/Y/R/B/O	NT_029865	AC099792	61215629	3	RH13236	1	169.82	1	3057.00			1	AC016857.6, AC058796.1, AC099792.2, AL355795.13
S/G/Y/R/B/O	NT_029865	AL355795	61269346	3	RH69275	1	171.13					1	AC016857.6, AL355795.13
S/G/Y/R/B/O	NT_029865	AL355795	61339653	3	RH50889	1	165.56	1	3062.00	1	196.30	1	AC016857.6, AC096534.2, AL355795.13
S/G/Y/R/B/O	NT_029865	AC096534	61466429	1	RH31571			1	3062.00			1	AC026025.4, AC096534.2, AL390054.4
S/G/Y/R/B/O	NT_029865	AL445432	61499130	3
S/G/Y/R/B/O	NT_029865	AC096947	61518466	3	RH68826	1	171.13					1	AC096947.2
S/G/Y/R/B/O	NT_029865	AC096947	61524614	3	RH92747	1	169.92					1	AC096947.2, AL356112.3
S/G/Y/R/B/O	NT_029865	AC096947	61533526	3	RH49229	1	171.32					1	AC096947.2
S/G/Y/R/B/O	NT_029865	AC096947	61539148	3	RH64776	1	169.92					1	AC096947.2, AL356112.3
S/G/Y/R/B/O	NT_029865	AC096947	61544624	3	RH50353	1	171.13	1	3051.00	1	200.50	1	AC096947.2, AL356112.3
S/G/Y/R/B/O	NT_029865	AC096947	61544733	3	RH16390	1	169.82					1	AC096947.2, AL356112.3
S/G/Y/R/B/O	NT_029865	AC096947	61555819	3	RH36017	1	171.23					1	AC096947.2, AL356112.3
S/G/Y/R/B/O	NT_029865	AC096947	61556585	3	RH64321	1	169.82			1	194.70	1	AC096947.2, AL356112.3
S/G/Y/R/B/O	NT_029865	AC096947	61556616	3	RH49883	1	169.82			1	200.60	1	AC096947.2, AL356112.3
S/G/Y/R/B/O	NT_029865	AC096947	61562522	3	RH80440	1	167.71					1	AC096947.2, AL356112.3
S/G/Y/R/B/O	NT_029865	AC096947	61602942	3	RH45701	1	165.46					1	AC096947.2, AL356112.3
S/G/Y/R/B/O	NT_029865	AC096947	61654222	3	RH50438	1	171.13	1	3057.00	1	200.50	1	AC092784.2, AL356112.3
S/G/Y/R/B/O	NT_029865	AC092784	61654441	3	RH35947	1	156.58					1	AC092784.2, AL356112.3
S/G/Y/R/B/O	NT_029865	AC092784	61677271	3	RH14308			1	3062.00			1	AC092784.2, AL445198.13
S/G/Y/R/B/O	NT_029865	AC092784	61715226	3	WI-3791					1	200.60	1	AC092784.2, AL445198.13
S/G/Y/R/B/O	NT_029865	AL445198	61723124	3
S/G/Y/R/B/O	NT_029865	AL096888	61790641	3	RH31572			1	3071.00			1	AL096888.30
S/G/Y/R/B/O	NT_029865	AL096888	61791039	3	RH49758	1	165.46	1	3067.00	1	196.30	1	AL096888.30
S/G/Y/R/B/O	NT_029865	AL096888	61791170	3	RH44635	1	165.46					1	AL096888.30
S/G/Y/R/B/O	NT_029865	AL096888	61838360	3	AFMB346ZB5					1	200.50	1	AL096888.30
S/G/Y/R/B/O	NT_029865	AL096888	61854902	3	RH11896	1	151.08					1	AL096888.30
S/G/Y/R/B/O	NT_029865	AL096888	61855091	3	RH64203	1	169.92			1	196.30	1	AL096888.30
S/G/Y/R/B/O	NT_029865	AL096888	61855370	3	RH67803	1	171.13					1	AL096888.30
S/G/Y/R/B/O	NT_029865	AL096888	61856702	3	RH47570	1	171.13					1	AL096888.30
S/G/Y/R/B/O	NT_029865	AL096888	61858391	3	RH102940	1	169.82					1	AL096888.30
S/G/Y/R/B/O	NT_029865	AL096888	61861520	3	RH75756	1	169.92					1	AL096888.30
S/G/Y/R/B/O	NT_029865	AL590393	61865213	3
S/G/Y/R/B/O	NT_029865	AC099791	61906004	3	RH13258	1	172.55	1	3099.00			1	AC099791.2
S/G/Y/R/B/O	NT_029865	AC099791	62080524	3	RH63929	1	172.16			1	198.50	1	AC025691.4, AC099791.2

NT_029865 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	All Accessions
S/G/Y/R/B/O	NT_029865	AC099791	62080562	3	RH36874	2	556.58					1	AC025691.4, AC099791.2
S/G/Y/R/B/O	NT_029865	AC099791	62080933	3	RH92344	1	172.55					1	AC025691.4, AC099791.2
S/G/Y/R/B/O	NT_029865	AC099791	62093664	3	RH36211	1	172.55					1	AC025691.4, AC097064.2, AC099791.2
S/G/Y/R/B/O	NT_029865	AC099791	62096413	3	RH48842	1	165.38					1	AC025691.4, AC097064.2, AC099791.2
S/G/Y/R/B/O	NT_029865	AC097064	62166412	1	RH103735	1	172.55					1	AC025691.4, AC097064.2, AL357145.3
S/G/Y/R/B/O	NT_029865	AL449143	62266175	3	RH49843	1	173.27			1	200.60	1	AC097064.2, AL449143.18
S/G/Y/R/B/O	NT_029865	AL353802	62355571	3	RH67368	1	172.55					1	AL353802.14
S/G/Y/R/B/O	NT_029865	AL353802	62415076	3	RH66209	1	165.46					1	AL353802.14
S/G/Y/R/B/O	NT_029865	AL590374	62436655	3
S/G/Y/R/B/O	NT_029865	AL136458	62452706	3	RH36566	1	167.81					1	AC090170.4, AL136458.16
S/G/Y/R/B/O	NT_029865	AL136458	62494859	3	RH13400	1	173.06	1	3133.00			1	AC090170.4, AL136458.16
S/G/Y/R/B/O	NT_029865	AL136458	62537104	3	D1S230					1	197.90	1	AC044779.5, AC090170.4, AL136458.16
S/G/Y/R/B/O	NT_029865	AL136458	62553170	3	RH103630	1	171.13					1	AC044779.5, AC090170.4, AL136458.16
S/G/Y/R/B/O	NT_029865	AL136458	62563694	3	RH94138	1	172.55					1	AC044779.5, AC090170.4, AL136458.16
S/G/Y/R/B/O	NT_029865	AL162739	62636652	3	RH69659	1	171.42					1	AC044779.5, AL162739.24
S/G/Y/R/B/O	NT_029865	AL139343	62653157	3
S/G/Y/R/B/O	NT_029865	AC096946	62852358	1	RH78360	1	171.54					1	AC096946.1, AL391257.3
S/G/Y/R/B/O	NT_029865	AL451044	62855776	3	RH64736	1	171.13					1	AC096946.1, AL391257.3, AL451044.7
S/G/Y/R/B/O	NT_029865	AL451044	62878496	3	RH36075	1	172.55					1	AL391257.3, AL451044.7
S/G/Y/R/B/O	NT_029865	AL138847	62984868	3	RH49866	1	173.06			1	200.60	1	AL138847.14
S/G/Y/R/B/O	NT_029865	AL138847	62984868	3	RH12728	1	165.46					1	AL138847.14
S/G/Y/R/B/O	NT_029865	AL138847	62984989	3	RH16946	1	172.55					1	AL138847.14
S/G/Y/R/B/O	NT_029865	AL138847	62990798	3	RH16676	1	171.13					1	AL138847.14
S/G/Y/R/B/O	NT_029865	AL138847	62998685	3	RH8835			1	3137.00			1	AL138847.14
S/G/Y/R/B/O	NT_029865	AL138847	63006820	3	RH64421	1	169.82			1	200.50	1	AL138847.14
S/G/Y/R/B/O	NT_029865	AL138847	63006929	3	RH46994	1	165.46					1	AL138847.14
S/G/Y/R/B/O	NT_029865	AC103923	63161091	3	WI-4539					1	200.10	3	AC016677.4, AC021618.4, AC022517.1, AC103923.2, AL022144.1
S/G/Y/R/B/O	NT_029865	AC119425	63230674	1
S/G/Y/R/B/O	NT_029865	AC099794	63262242	3	RH31573			1	3152.00			1	AC099794.2, AC119425.1
S/G/Y/R/B/O	NT_029865	AC099794	63265598	3	RH64422	1	171.13	1	2968.00	1	200.70	1	AC099794.2, AC119425.1
S/G/Y/R/B/O	NT_029865	AL162400	63487966	3	RH30678			1	3178.00			1	AC026144.2, AL162400.11
S/G/Y/R/B/O	NT_029865	AC096543	63623769	3	RH104163	1	171.54					1	AC096543.2
S/G/Y/R/B/O	NT_029865	AL138935	63664006	3
S/G/Y/R/B/O	NT_029865	AL049636	63673468	3
S/G/Y/R/B/O	NT_029865	AL592218	63837637	3	RH50649	1	172.57	1	3000.00	1	199.30	1	AL591362.1, AL592218.8
S/G/Y/R/B/O	NT_029865	AL592218	63837637	3	RH68218	1	172.55					1	AL591362.1, AL592218.8
S/G/Y/R/B/O	NT_029865	AL592218	63841616	3	RH91667	1	165.38					1	AL591362.1, AL592218.8
S/G/Y/R/B/O	NT_029865	AL591362	63853405	1	RH49820	1	172.57			1	192.50	1	AL591362.1
S/G/Y/R/B/O	NT_029865	AL109925	63969579	3	RH49953	1	172.16			1	200.70	1	AC027520.2, AL109925.11, AL591362.1
S/G/Y/R/B/O	NT_029865	AL109925	64056814	3	RH50576	1	171.74			1	200.70	1	AC027520.2, AL109925.11
S/G/Y/R/B/O	NT_029865	AL109925	64056905	3	RH17744	1	173.06					1	AC027520.2, AL109925.11
S/G/Y/R/B/O	NT_029865	AL512663	64074743	3
S/G/Y/R/B/O	NT_029865	AL161742	64147914	3
S/G/Y/R/B/O	NT_029865	AL353713	64273721	3	D1S515					1	200.60	1	AC025544.4, AL353713.7, AL356914.2
S/G/Y/R/B/O	NT_029865	AL353713	64273721	3	RH698			1	3019.00			1	AC025544.4, AL353713.7, AL356914.2
S/G/Y/R/B/O	NT_029865	AL353713	64295097	3	RH64612	1	172.14					1	AC025544.4, AL353713.7
S/G/Y/R/B/O	NT_029865	AL353713	64309032	3	RH47810	1	165.56					1	AC025544.4, AL353713.7, AL359769.9
S/G/Y/R/B/O	NT_029865	AL359769	64347428	1	RH64432	1	166.89			1	200.70	1	AC018773.2, AL359769.9, AL808029.1
S/G/Y/R/B/O	NT_029865	AL359769	64404520	1	RH31574			1	3201.00			1	AC018773.2, AL359769.9
S/G/Y/R/B/O	NT_029865		-		RH27073	1	167.30					1	AC119800.1

NT_029865 (cont)

Links	Contig	Chr Start	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	All Accessions
S/G/Y/R/B/O	NT_029865	-	RH14124			1	3135.00			4
S/G/Y/R/B/O	NT_029865	-	SGC31372					1	199.30	1	AC080177.2, AL606762.6
S/G/Y/R/B/O	NT_029865	-	RH47089	1	165.66					1	AC012245.5, AC061976.2, AL355515.12
S/G/Y/R/B/O	NT_029865	-	RH14520			1	2889.00			1	AL355995.3, AL445928.8
S/G/Y/R/B/O	NT_029865	-	WI-5588					1	199.30	1	AC027052.3, AL109845.8, AL359879.4
S/G/Y/R/B/O	NT_029865	-	RH65717	1	165.76					1	AC025866.2, AL606517.14
S/G/Y/R/B/O	NT_029865	-	RH30714			1	2881.00			1	AL354826.6
S/G/Y/R/B/O	NT_029865	-	WI-18101					1	199.30	1	AL713859.5
S/G/Y/R/B/O	NT_029865	-	RH78685	1	165.46					0
S/G/Y/R/B/O	NT_029865	-	RH32320			1	3135.00			1	AC026050.3, AL138795.21, AL359875.3, AL359883.7, AL365403.14
S/G/Y/R/B/O	NT_029865	-	D1S220					1	199.30	1	AL136985.11
S/G/Y/R/B/O	NT_029865	-	RH91248	1	165.56					0
S/G/Y/R/B/O	NT_029865	-	RH32611			1	2915.00			1	AC055781.3, AL117350.12
S/G/Y/R/B/O	NT_029865	-	RH91557	1	165.66					0
S/G/Y/R/B/O	NT_029865	-	RH32958			1	2900.00			1	AC016301.4, AL121990.33
S/G/Y/R/B/O	NT_029865	-	RH93365	1	166.99					0
S/G/Y/R/B/O	NT_029865	-	RH33466			1	2906.00			1	AC055781.3, AL160004.18
S/G/Y/R/B/O	NT_029865	-	RH38217			1	2900.00			1	AL354983.9