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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_004350 NT_004321 NT_004547 NT_034374 NT_022058 NT_021917 NT_028054 NT_032967
NT_021937 NT_034375 NT_022041 NT_004873 NT_034376 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_034377 NT_030571 NT_004782 NT_028053 NT_034378
NT_004538 NT_034379 NT_034380 NT_004511 NT_004852 NT_032963 NT_032971 NT_032972
NT_004386 NT_032977 NT_004424 NT_032973 NT_029223 NT_029865 NT_031737 NT_004636
NT_034381 NT_032948 NT_034382 NT_004464 NT_034383 NT_034384 NT_004483 NT_032974
NT_004902 NT_034385 NT_026943 NT_034386 NT_029231 NT_034387 NT_004658 NT_004686
NT_034388 NT_021979 NT_034389 NT_034390 NT_034391 NT_030565 NT_034392 NT_034393
NT_028050 NT_030567 NT_034394 NT_021977 NT_034395 NT_029860 NT_019273 NT_034396
NT_031697 NT_004754 NT_032975 NT_022052 NT_034397 NT_022071 NT_004434 NT_034398
NT_034399 NT_034400 NT_034401 NT_034402 NT_034403 NT_032962 NT_034428 NT_021907
NT_004441 NT_030577 NT_004858 NT_004982 NT_026945 NT_004668 NT_034404 NT_034405
NT_029874 NT_034406 NT_004487 NT_021905 NT_004599 NT_034407 NT_004671 NT_004416
NT_029862 NT_034408 NT_034409 NT_034410 NT_034411 NT_032947 NT_029226 NT_021877
NT_031718 NT_034412 NT_034413 NT_004612 NT_034414 NT_034415 NT_021953 NT_004861
NT_004525 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433 NT_034416
NT_030561 NT_034417 NT_004836 NT_004771 NT_004734 NT_031700 NT_004536 NT_032964
NT_031730 NT_029870 NT_032969 NT_032968 NT_034418


  NT_004873
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004873AL603890130480783RH103706151.31    3  
S/G/Y/R/B/O NT_004873AL603890130657623RH102749151.31    2  
S/G/Y/R/B/O NT_004873AL603749131987623RH9867151.31    1 AC019262.3, AL451066.9, AL603749.6
S/G/Y/R/B/O NT_004873AL354712132092763          
S/G/Y/R/B/O NT_004873AL359771133398103RH47572151.31    1 AL359771.27
S/G/Y/R/B/O NT_004873AL359771133398353RH75620153.63    1 AL359771.27
S/G/Y/R/B/O NT_004873AL359771133406803RH50601151.31    1 AL359771.27
S/G/Y/R/B/O NT_004873AL359771133406803WI-14621    148.601 AL359771.27
S/G/Y/R/B/O NT_004873AL359771133407563RH64470151.31  150.001 AL359771.27
S/G/Y/R/B/O NT_004873AL359771133408303TIGR-A005E39    154.301 AL359771.27
S/G/Y/R/B/O NT_004873AL359771133408303RH49892151.31    1 AL359771.27
S/G/Y/R/B/O NT_004873AL359771133412723RH69959151.31    1 AL359771.27
S/G/Y/R/B/O NT_004873AL359771133836493RH635  1782.00  1 AL359771.27
S/G/Y/R/B/O NT_004873AL359771133857753RH50812151.31  150.201 AC024999.2, AL359771.27
S/G/Y/R/B/O NT_004873AL359771133857753RH25712153.36    1 AC024999.2, AL359771.27
S/G/Y/R/B/O NT_004873AL583942134397463          
S/G/Y/R/B/O NT_004873AL031277134723823RH92373151.31    1 AC074234.5, AL031277.1
S/G/Y/R/B/O NT_004873AL031277134843053RH63906151.31  153.501 AC074234.5, AL031277.1
S/G/Y/R/B/O NT_004873AL031277135114593RH76172151.31    1 AC024999.2, AC074234.5, AL031277.1
S/G/Y/R/B/O NT_004873AL031277135469673RH64368151.21  153.501 AC024999.2, AC074234.5, AL031277.1
S/G/Y/R/B/O NT_004873AL031277135486953RH50727151.21    1 AC024999.2, AC074234.5, AL031277.1
S/G/Y/R/B/O NT_004873AL031277135486953WI-14635    148.001 AC024999.2, AC074234.5, AL031277.1
S/G/Y/R/B/O NT_004873AL031273135941203          
S/G/Y/R/B/O NT_004873AL033525137830213RH27217131.78    1 AC053474.1, AL033525.10
S/G/Y/R/B/O NT_004873Z99291138617893RH30654  1271.00  1 AL359086.9, Z99291.1
S/G/Y/R/B/O NT_004873AL357873139147733RH64323151.21    1 AL357873.17, AL359086.9
S/G/Y/R/B/O NT_004873AL357873139147733WI-13518    149.301 AL357873.17, AL359086.9
S/G/Y/R/B/O NT_004873AL357873139149013RH16719151.31    1 AL357873.17, AL359086.9
S/G/Y/R/B/O NT_004873AL357873139357723RH64373151.21  150.201 AL357873.17, AL359086.9
S/G/Y/R/B/O NT_004873AL359873141048543RH32365  1834.00  1 AL359873.11
S/G/Y/R/B/O NT_004873AL359873141291303WI-4136    151.801 AL359873.11
S/G/Y/R/B/O NT_004873AL161427141385413          
S/G/Y/R/B/O NT_004873AL358793142156313          
S/G/Y/R/B/O NT_004873AL034395143898273RH67949171.55    2 AL360012.17, AL513497.20, AL714002.13, AL714002.13
S/G/Y/R/B/O NT_004873AL031732144260363RH42655161.05    1 AL031732.8
S/G/Y/R/B/O NT_004873AL031732144260363D1S507    154.201 AL031732.8
S/G/Y/R/B/O NT_004873AL031732144260863RH933  1827.00  1 AL031732.8
S/G/Y/R/B/O NT_004873AL031732144343913RH50666158.891834.00156.701 AL031732.8
S/G/Y/R/B/O NT_004873AL031293145412373RH64289158.89  156.201 AL031293.1, AL391866.8
S/G/Y/R/B/O NT_004873AL445263145895573          
S/G/Y/R/B/O NT_004873AL391215146759723RH31552  1791.00  1 AC055792.2, AL391215.12, AL391866.8
S/G/Y/R/B/O NT_004873AL035405147900933RH12097156.77    1 AC055792.2, AL035405.10
S/G/Y/R/B/O NT_004873AL035405147906783RH64631156.77    1 AC055792.2, AL035405.10
S/G/Y/R/B/O NT_004873AL035405147907023RH67031156.77    1 AC055792.2, AL035405.10
S/G/Y/R/B/O NT_004873AL035405147908213RH64663156.67    1 AC055792.2, AL035405.10
S/G/Y/R/B/O NT_004873AL035405148417353RH93212156.77    1 AL035405.10
S/G/Y/R/B/O NT_004873AL391094149439683RH102685156.67    1 AL391094.12
S/G/Y/R/B/O NT_004873AL158174149771333          
S/G/Y/R/B/O NT_004873AL031283151540793RH15623156.77    1 AL031283.26, AL589992.13
S/G/Y/R/B/O NT_004873AL512883151943243RH67819156.77    2  


  NT_004873 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004873AL512883152136143RH67819156.77    2  
S/G/Y/R/B/O NT_004873AL512883152136253RH33708  1810.00  1 AC009056.5, AL512883.5, AL589992.13
S/G/Y/R/B/O NT_004873AL512883152161723RH12255156.77    1 AC009056.5, AL512883.5, AL589992.13
S/G/Y/R/B/O NT_004873AL512883152278163RH42880  1814.00  1 AC009056.5, AL512883.5, AL589992.13
S/G/Y/R/B/O NT_004873AL121992152678523RH49160156.77  156.601 AC009056.5, AL121992.24
S/G/Y/R/B/O NT_004873AL121992152682883RH64692156.77    1 AC009056.5, AL121992.24
S/G/Y/R/B/O NT_004873AL121992152927363RH50017156.77  156.601 AC009056.5, AL121992.24
S/G/Y/R/B/O NT_004873AL121992152927363RH32464  187.00  1 AC009056.5, AL121992.24
S/G/Y/R/B/O NT_004873AL121992152944973RH64427158.391802.00156.601 AC009056.5, AL121992.24
S/G/Y/R/B/O NT_004873AL121992152944973RH70283156.77    1 AC009056.5, AL121992.24
S/G/Y/R/B/O NT_004873AL121992152952543SGC32451    158.101 AC009056.5, AL121992.24
S/G/Y/R/B/O NT_004873AL121992152952543RH25967156.77    1 AC009056.5, AL121992.24
S/G/Y/R/B/O NT_004873AL121992152955873RH68726156.77    1 AC009056.5, AL121992.24
S/G/Y/R/B/O NT_004873AL121992152956223RH103318156.77    1 AC009056.5, AL121992.24
S/G/Y/R/B/O NT_004873AL121992152972893RH1366  1816.00  1 AC009056.5, AL121992.24
S/G/Y/R/B/O NT_004873AL121992153855743RH70927156.77    1 AC058783.22, AL121992.24
S/G/Y/R/B/O NT_004873AL121992153901693RH14275  1813.00  1 AC058783.22, AL121992.24
S/G/Y/R/B/O NT_004873AL606758154301153          
S/G/Y/R/B/O NT_004873AL450998154582873RH47456156.77    1 AC058783.22, AL450998.19
S/G/Y/R/B/O NT_004873AL450998154583843RH35985156.77    1 AC058783.22, AL450998.19
S/G/Y/R/B/O NT_004873AL450998154661813RH48605156.77    1 AC058783.22, AL450998.19
S/G/Y/R/B/O NT_004873AL450998155101003RH49795156.87  155.101 AC058783.22, AL450998.19
S/G/Y/R/B/O NT_004873AL450998155102273RH14176  18947.00  1 AC058783.22, AL450998.19
S/G/Y/R/B/O NT_004873AL450998155601173RH27137156.67    1 AL450998.19
S/G/Y/R/B/O NT_004873AL034555156543633RH48282156.87    1 AL034555.2, AL355994.4
S/G/Y/R/B/O NT_004873AL034555156573853RH45538156.67    1 AL034555.2, AL355994.4
S/G/Y/R/B/O NT_004873AL034555156574543RH80734154.72    1 AL034555.2, AL355994.4
S/G/Y/R/B/O NT_004873AL034555156641003RH10429158.89    1 AL034555.2, AL355994.4
S/G/Y/R/B/O NT_004873AL034555156641423RH9800156.57    1 AL034555.2, AL355994.4
S/G/Y/R/B/O NT_004873AL034555156643023RH75589159.20    1 AL034555.2, AL355994.4
S/G/Y/R/B/O NT_004873AL034555156657643RH64190156.67    1 AL034555.2, AL355994.4
S/G/Y/R/B/O NT_004873AL034555156657673RH66908156.87    1 AL034555.2, AL355994.4
S/G/Y/R/B/O NT_004873AL034555156659953RH70580154.76    1 AL034555.2, AL355994.4
S/G/Y/R/B/O NT_004873AL034555156778403RH64287156.671816.00155.101 AL034555.2, AL355994.4
S/G/Y/R/B/O NT_004873AL096775157301813RH45130161.16    1 AL096775.10, AL355994.4
S/G/Y/R/B/O NT_004873AL096775157378613RH16460159.62    1 AL096775.10, AL355994.4
S/G/Y/R/B/O NT_004873AL096775157379843RH64687159.10    1 AL096775.10, AL355994.4
S/G/Y/R/B/O NT_004873AL096775157386973RH64695158.89    1 AL096775.10, AL355994.4
S/G/Y/R/B/O NT_004873AL451042157746983RH102360160.25    1 AL451042.10
S/G/Y/R/B/O NT_004873AL451042157833983RH69148162.53    1 AL451042.10
S/G/Y/R/B/O NT_004873AL109627158572423RH91904156.77    1 AL109627.18
S/G/Y/R/B/O NT_004873AL109627158877043RH64220158.89  155.101 AL109627.18
S/G/Y/R/B/O NT_004873AL109627158877053RH25783156.87    1 AL109627.18
S/G/Y/R/B/O NT_004873AL109627158896713RH25795156.67    1 AL109627.18
S/G/Y/R/B/O NT_004873AL109627159001563RH8087116372.28    2 AC010537.2, AC026461.9, AC106779.3, AL109627.18
S/G/Y/R/B/O NT_004873AL109627159061083RH103269156.67    1 AL109627.18
S/G/Y/R/B/O NT_004873AL109627159064303RH104187156.87    1 AL109627.18
S/G/Y/R/B/O NT_004873AL109627159094303RH69944158.89    1 AL109627.18
S/G/Y/R/B/O NT_004873AL109627159094383RH68740159.20    1 AL109627.18
S/G/Y/R/B/O NT_004873AL358794160105033RH93194161.05    1 AL358794.19


  NT_004873 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004873AL358794160541803RH44440162.10    1 AL358794.19
S/G/Y/R/B/O NT_004873AL358794160543713RH75437162.10    1 AL358794.19
S/G/Y/R/B/O NT_004873AL358794160547473RH26282161.99    1 AL358794.19
S/G/Y/R/B/O NT_004873AL358794160550233RH70040161.16    1 AL358794.19
S/G/Y/R/B/O NT_004873AL358794160569563RH8050216163.34    4 AC010093.8, AC020757.5, AC097471.1, AL358794.19, U91318.1
S/G/Y/R/B/O NT_004873AL358794160576813RH32897  12440.00  1 AL358794.19
S/G/Y/R/B/O NT_004873AL358794160576813RH5288512248.88  12345.201 AL358794.19
S/G/Y/R/B/O NT_004873AL669962161003923RH103552160.74    1 AL355800.5, AL669962.4
S/G/Y/R/B/O NT_004873AL137802161187003RH26972158.89    1 AL137802.7, AL355800.5
S/G/Y/R/B/O NT_004873AL137802161202933RH46152160.43    2 AC015618.3, AL137802.7, AL355800.5, AL713858.4
S/G/Y/R/B/O NT_004873AL137802161279463RH49938159.20  154.802 AC015618.3, AL137802.7, AL355800.5, AL713858.4
S/G/Y/R/B/O NT_004873AL137802161279603RH25768160.43    2 AC015618.3, AL137802.7, AL355800.5, AL713858.4
S/G/Y/R/B/O NT_004873AL137802161327163RH50160160.63  154.902 AC015618.3, AL137802.7, AL355800.5, AL713858.4
S/G/Y/R/B/O NT_004873AL137802161730473RH11069162.53    5 AC021338.4, AL162261.8, AL354666.5, AL392186.2, AL590643.7
S/G/Y/R/B/O NT_004873AL137802161745953RH102689162.15    5  
S/G/Y/R/B/O NT_004873AL355149162048763RH64758161.99    2 AC015618.3, AL354666.5, AL355149.13, AL355800.5, AL713858.4
S/G/Y/R/B/O NT_004873AL355149162172713WI-9839    155.102 AL354666.5
S/G/Y/R/B/O NT_004873AL137798162530443RH68104164.58    3 AL354666.5, AL356581.4, AL391068.7, AL590643.7, AL592309.24, AL713858.4
S/G/Y/R/B/O NT_004873AL137798162530523RH104463164.58    3  
S/G/Y/R/B/O NT_004873AL137798162645233RH64570163.36    2  
S/G/Y/R/B/O NT_004873AL137798162650453RH75551161.78    2 AL137798.8, AL354666.5, AL355800.5, AL356581.4, AL590643.7, AL713858.4
S/G/Y/R/B/O NT_004873AL137798162772903RH50674163.32  159.802 AL137798.8, AL354666.5, AL355800.5, AL356581.4, AL392186.2, AL590643.7, AL590643.7, AL713858.4
S/G/Y/R/B/O NT_004873AL137798162772903RH14815  1598.00  2 AL137798.8, AL354666.5, AL355800.5, AL356581.4, AL392186.2, AL590643.7, AL590643.7, AL713858.4
S/G/Y/R/B/O NT_004873AL137798163092743RH92673163.47    1 AC021338.4, AL137798.8, AL354666.5, AL590643.7
S/G/Y/R/B/O NT_004873AL137798163113493RH13864  37939.00  2 AC021338.4, AC021338.4, AL021920.1, AL354666.5
S/G/Y/R/B/O NT_004873AL137798163113563RH7921  37932.00  2 AC021338.4, AC021338.4, AL021920.1, AL354666.5
S/G/Y/R/B/O NT_004873AL137798163257223RH11069162.53    5 AC021338.4, AL162261.8, AL354666.5, AL392186.2, AL590643.7
S/G/Y/R/B/O NT_004873AL137798163272593RH102689162.15    5  
S/G/Y/R/B/O NT_004873AL137798163423833RH18177X61.50    3 AC021338.4, AL021920.1, AL137798.8, AL732366.4, AL807772.4
S/G/Y/R/B/O NT_004873AL137798163436123RH69571163.47    3 AC021338.4, AL021920.1, AL137798.8, AL732366.4, AL807772.4
S/G/Y/R/B/O NT_004873AL137798163445643RH49902162.21    2 AC021338.4, AL021920.1, AL137798.8
S/G/Y/R/B/O NT_004873AL137798163445643WI-8685    154.202 AC021338.4, AL021920.1, AL137798.8
S/G/Y/R/B/O NT_004873AL021920163981213RH102689162.15    5  
S/G/Y/R/B/O NT_004873AL021920163994383RH11069162.53    5 AC021338.4, AL162261.8, AL354666.5, AL392186.2, AL590643.7
S/G/Y/R/B/O NT_004873AL021920164139363RH13864  37939.00  2 AC021338.4, AC021338.4, AL021920.1, AL354666.5
S/G/Y/R/B/O NT_004873AL021920164139363RH7921  37932.00  2 AC021338.4, AC021338.4, AL021920.1, AL354666.5
S/G/Y/R/B/O NT_004873AL021920164244683RH102089162.58    2  
S/G/Y/R/B/O NT_004873AC021338164851521RH11069162.53    5 AC021338.4, AL162261.8, AL354666.5, AL392186.2, AL590643.7
S/G/Y/R/B/O NT_004873AC021338164866961RH102689162.15    5  
S/G/Y/R/B/O NT_004873AC021338165018351RH18177X61.50    3 AC021338.4, AL021920.1, AL137798.8, AL732366.4, AL807772.4
S/G/Y/R/B/O NT_004873AC021338165030641RH69571163.47    3 AC021338.4, AL021920.1, AL137798.8, AL732366.4, AL807772.4
S/G/Y/R/B/O NT_004873AC021338165040141RH49902162.21    2 AC021338.4, AL021920.1, AL137798.8
S/G/Y/R/B/O NT_004873AC021338165040141WI-8685    154.202 AC021338.4, AL021920.1, AL137798.8
S/G/Y/R/B/O NT_004873 - RH103019158.89    0 AL355994.4, AL355994.4
S/G/Y/R/B/O NT_004873 - RH32465  1815.00  1 AC123902.1, AL136528.11
S/G/Y/R/B/O NT_004873 - RH104540156.87    0  
S/G/Y/R/B/O NT_004873 - RH47164156.77    0 AC009056.5, AL121992.24
S/G/Y/R/B/O NT_004873 - RH47222161.89    1 AL031602.14, AL109627.18
S/G/Y/R/B/O NT_004873 - RH49853160.84    0  
S/G/Y/R/B/O NT_004873 - RH63867154.20    1 AC058783.22, AL121602.33, AL122001.32, AL360086.5


  NT_004873 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004873 - RH68682156.87    0  
S/G/Y/R/B/O NT_004873 - RH71372156.67    0  
S/G/Y/R/B/O NT_004873 - RH74803156.57    0  
S/G/Y/R/B/O NT_004873 - RH76111162.31    1 AL035413.19, AL360017.5