Chromosome 1 - RH Maps - Single Contig

Chromosome 1 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_004350	NT_004321	NT_004547	NT_034374	NT_022058	NT_021917	NT_028054	NT_032967
NT_021937	NT_034375	NT_022041	NT_004873	NT_034376	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_034377	NT_030571	NT_004782	NT_028053	NT_034378
NT_004538	NT_034379	NT_034380	NT_004511	NT_004852	NT_032963	NT_032971	NT_032972
NT_004386	NT_032977	NT_004424	NT_032973	NT_029223	NT_029865	NT_031737	NT_004636
NT_034381	NT_032948	NT_034382	NT_004464	NT_034383	NT_034384	NT_004483	NT_032974
NT_004902	NT_034385	NT_026943	NT_034386	NT_029231	NT_034387	NT_004658	NT_004686
NT_034388	NT_021979	NT_034389	NT_034390	NT_034391	NT_030565	NT_034392	NT_034393
NT_028050	NT_030567	NT_034394	NT_021977	NT_034395	NT_029860	NT_019273	NT_034396
NT_031697	NT_004754	NT_032975	NT_022052	NT_034397	NT_022071	NT_004434	NT_034398
NT_034399	NT_034400	NT_034401	NT_034402	NT_034403	NT_032962	NT_034428	NT_021907
NT_004441	NT_030577	NT_004858	NT_004982	NT_026945	NT_004668	NT_034404	NT_034405
NT_029874	NT_034406	NT_004487	NT_021905	NT_004599	NT_034407	NT_004671	NT_004416
NT_029862	NT_034408	NT_034409	NT_034410	NT_034411	NT_032947	NT_029226	NT_021877
NT_031718	NT_034412	NT_034413	NT_004612	NT_034414	NT_034415	NT_021953	NT_004861
NT_004525	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433	NT_034416
NT_030561	NT_034417	NT_004836	NT_004771	NT_004734	NT_031700	NT_004536	NT_032964
NT_031730	NT_029870	NT_032969	NT_032968	NT_034418

NT_004464

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	All Accessions
S/G/Y/R/B/O	NT_004464	AL356106	69678743	3
S/G/Y/R/B/O	NT_004464	AL358854	69731222	3
S/G/Y/R/B/O	NT_004464	AL512271	69814330	3
S/G/Y/R/B/O	NT_004464	AL157406	69965021	3	RH49137	1	191.33			1	211.80	1	AC021495.4
S/G/Y/R/B/O	NT_004464	AL157406	69965021	3	RH35092			1	3653.00			1	AC021495.4
S/G/Y/R/B/O	NT_004464	AL359894	70178713	3	RH49143	1	189.50					1	AL139153.4, AL359894.9
S/G/Y/R/B/O	NT_004464	AL359894	70178800	3	RH33500			1	3644.00			1	AL139153.4, AL359894.9
S/G/Y/R/B/O	NT_004464	AL117353	70269601	3	GCT17A04					1	212.10	1	AL117353.6, AL139153.4
S/G/Y/R/B/O	NT_004464	AL117353	70280721	3	RH64251	1	187.38					1	AL117353.6
S/G/Y/R/B/O	NT_004464	AL117353	70280721	3	WI-15123					1	225.40	1	AL117353.6
S/G/Y/R/B/O	NT_004464	AL359412	70340678	3
S/G/Y/R/B/O	NT_004464	AL391728	70467403	3	RH25918	1	187.38					1	AC055743.18, AL391728.19
S/G/Y/R/B/O	NT_004464	AL391728	70468288	3	RH64584	1	189.50					1	AC055743.18, AL391728.19
S/G/Y/R/B/O	NT_004464	AL391728	70470903	3	RH65450	1	230.39					1	AC055743.18, AL391728.19
S/G/Y/R/B/O	NT_004464	AL391728	70510024	3	RH104098	1	187.58					1	AL391728.19
S/G/Y/R/B/O	NT_004464	AL158840	70598354	3	RH14624			1	3558.00			1	AC025738.2, AL158840.14
S/G/Y/R/B/O	NT_004464	AL158840	70598396	3	RH78155	1	187.68					1	AC025738.2, AL158840.14
S/G/Y/R/B/O	NT_004464	AL157948	70640478	3
S/G/Y/R/B/O	NT_004464	AL353771	70733799	3	RH18193	1	230.39					1	AC019213.4, AL353771.8
S/G/Y/R/B/O	NT_004464	AL353771	70733829	3	RH26326	1	191.86					1	AC019213.4, AL353771.8
S/G/Y/R/B/O	NT_004464	AL353771	70734810	3	WI-15590					1	216.70	1	AC019213.4, AL353771.8
S/G/Y/R/B/O	NT_004464	AL353771	70734810	3	RH64330	1	230.39					1	AC019213.4, AL353771.8
S/G/Y/R/B/O	NT_004464	AL353771	70794322	3	D1S462					1	212.10	1	AC019213.4, AL353771.8
S/G/Y/R/B/O	NT_004464	AL353771	70794322	3	RH29921			1	3539.00			1	AC019213.4, AL353771.8
S/G/Y/R/B/O	NT_004464	AL353771	70812169	3	RH70428	1	191.53					1	AC019213.4, AL353771.8
S/G/Y/R/B/O	NT_004464	AL353771	70840506	3	RH50817	1	189.50			1	216.10	1	AC019213.4, AL353771.8
S/G/Y/R/B/O	NT_004464	AL353771	70841278	3	RH69172	1	191.53					1	AC019213.4, AL353771.8
S/G/Y/R/B/O	NT_004464	AL353771	70842475	3	RH11749	1	190.93					1	AC019213.4, AL353771.8
S/G/Y/R/B/O	NT_004464	AL353771	70848706	3	RH49898	1	191.53					1	AC019213.4, AL353771.8
S/G/Y/R/B/O	NT_004464	AL353771	70848706	3	WI-21498					1	210.60	1	AC019213.4, AL353771.8
S/G/Y/R/B/O	NT_004464	AL353771	70850364	3	RH48351	1	191.53					1	AC019213.4, AL353771.8
S/G/Y/R/B/O	NT_004464	AL353771	70850940	3	RH50580	1	189.60			1	216.70	1	AC019213.4, AL353771.8
S/G/Y/R/B/O	NT_004464	AL353771	70851815	3	RH102825	1	230.39					1	AC019213.4, AL353771.8
S/G/Y/R/B/O	NT_004464	AL353771	70857482	3	RH92699	1	191.53					1	AC019213.4, AL353771.8
S/G/Y/R/B/O	NT_004464	AL354721	70906941	3	RH92420	1	189.60					1	AC019213.4, AL354721.18
S/G/Y/R/B/O	NT_004464	AL158839	70918030	3
S/G/Y/R/B/O	NT_004464	AL354872	71000826	3	RH92320	1	187.38					1	AC026545.2, AL354872.9
S/G/Y/R/B/O	NT_004464	AL354872	71028391	3	RH71397	1	192.27					1	AC026545.2, AL354872.9
S/G/Y/R/B/O	NT_004464	AL354872	71028514	3	RH42613	1	187.68					1	AC026545.2
S/G/Y/R/B/O	NT_004464	AL354872	71028514	3	RH932			1	3532.00			1	AC026545.2
S/G/Y/R/B/O	NT_004464	AL354872	71035070	3	RH47888	1	188.89					1	AC026545.2, AL354872.9
S/G/Y/R/B/O	NT_004464	AL592104	71135918	3
S/G/Y/R/B/O	NT_004464	AL513285	71265407	3
S/G/Y/R/B/O	NT_004464	AL662898	71361385	3
S/G/Y/R/B/O	NT_004464	AL158087	71442091	3	RH50725	1	189.60	1	3505.00	1	216.70	1	AL139422.3, AL158087.12
S/G/Y/R/B/O	NT_004464	AL031429	71560489	3	RH71017	1	189.89					1	AL031429.11, AL139422.3
S/G/Y/R/B/O	NT_004464	AL031429	71562741	3	CHLC.GATA85C01					1	211.20	1	AL031429.11
S/G/Y/R/B/O	NT_004464	AL031429	71596565	3	RH50215	1	189.60			1	216.70	1	AL031429.11
S/G/Y/R/B/O	NT_004464	AL031429	71596586	3	RH36741	1	187.68					1	AL031429.11
S/G/Y/R/B/O	NT_004464	AL031429	71610209	3	RH49133	1	187.68					1	AL031429.11

NT_004464 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	All Accessions
S/G/Y/R/B/O	NT_004464	AL031429	71610209	3	RH34819			1	3487.00			1	AL031429.11
S/G/Y/R/B/O	NT_004464	AL512443	71652994	3	RH68214	1	191.53					1	AL512443.7
S/G/Y/R/B/O	NT_004464	AL512443	71653115	3	RH37945			1	3476.00			1	AL512443.7
S/G/Y/R/B/O	NT_004464	AL512443	71653256	3	RH64689	1	189.60					1	AL512443.7
S/G/Y/R/B/O	NT_004464	AL512443	71655467	3	RH35994	1	191.53					1	AL512443.7
S/G/Y/R/B/O	NT_004464	AL512443	71655701	3	RH47523	1	189.60					1	AL512443.7
S/G/Y/R/B/O	NT_004464	AL512443	71658532	3	RH68377	1	189.19					1	AL512443.7
S/G/Y/R/B/O	NT_004464	AL512443	71659823	3	RH17537	1	191.53					1	AL512443.7
S/G/Y/R/B/O	NT_004464	AL512443	71666006	3	RH64636	1	189.60					1	AL512443.7
S/G/Y/R/B/O	NT_004464	AL360297	71700201	3
S/G/Y/R/B/O	NT_004464	AL358453	71868082	3
S/G/Y/R/B/O	NT_004464	AL627317	71992646	3	RH64199	1	187.58			1	216.70	1	AC027532.3, AC113411.1, AL627317.7
S/G/Y/R/B/O	NT_004464	AL627317	71993879	3	RH67891	1	191.53					1	AC027532.3, AC113411.1, AL627317.7
S/G/Y/R/B/O	NT_004464	AL627317	72063788	3	AFMB280XC1					1	216.20	1	AL627317.7
S/G/Y/R/B/O	NT_004464	AL354949	72066650	3
S/G/Y/R/B/O	NT_004464	AL355590	72245219	3
S/G/Y/R/B/O	NT_004464	AL359821	72280989	3
S/G/Y/R/B/O	NT_004464	AL356600	72446718	3	WI-4469					1	225.40	1	AC009694.4, AL158079.11, AL356600.13
S/G/Y/R/B/O	NT_004464	AL356600	72515806	3	WI-5356					1	212.10	1	AC009692.4, AC009694.4, AL356600.13
S/G/Y/R/B/O	NT_004464	AL356600	72519431	3	RH63813	1	189.60			1	216.20	1	AC009694.4, AL356600.13
S/G/Y/R/B/O	NT_004464	AL391239	72526399	3
S/G/Y/R/B/O	NT_004464	AL645767	72598767	3
S/G/Y/R/B/O	NT_004464	AL513349	72630485	3
S/G/Y/R/B/O	NT_004464	AL365362	72863734	3	RH80738	10	48.14					2	AC021592.3, AC053504.4, AL365362.9, AL596094.2
S/G/Y/R/B/O	NT_004464	AL365362	72864566	3	RH64495	1	187.68					1	AC021592.3, AL365362.9
S/G/Y/R/B/O	NT_004464	AL645724	72874056	3	RH15851	1	193.62					1	AC021592.3, AL645724.10
S/G/Y/R/B/O	NT_004464	AL512292	72877433	3
S/G/Y/R/B/O	NT_004464	AL365254	73010830	3
S/G/Y/R/B/O	NT_004464	AL513166	73166539	3
S/G/Y/R/B/O	NT_004464	AL139149	73335356	3
S/G/Y/R/B/O	NT_004464	AL583808	73355314	3
S/G/Y/R/B/O	NT_004464	AL732618	73537542	1	CHLC.GATA26C12					1	212.10	1	AL732618.4
S/G/Y/R/B/O	NT_004464	AL606535	73619051	3
S/G/Y/R/B/O	NT_004464	AL606463	73738865	3
S/G/Y/R/B/O	NT_004464	AL391297	73896169	3
S/G/Y/R/B/O	NT_004464	AC105273	74007209	3
S/G/Y/R/B/O	NT_004464	AL590092	74115512	3
S/G/Y/R/B/O	NT_004464	AC091615	74222952	3
S/G/Y/R/B/O	NT_004464	AC105269	74235384	3
S/G/Y/R/B/O	NT_004464	AL591463	74353067	3	CHLC.GATA5G07.526					1	216.10	1	AL591463.7
S/G/Y/R/B/O	NT_004464	AL591463	74353143	3	CHLC.GATA61A06					1	216.70	1	AL591463.7
S/G/Y/R/B/O	NT_004464	AL359200	74424616	3
S/G/Y/R/B/O	NT_004464	AC090530	74486555	1
S/G/Y/R/B/O	NT_004464	AL359205	74586921	3
S/G/Y/R/B/O	NT_004464	AC098692	74770181	3	RH66703	1	193.94					1	AC098692.3
S/G/Y/R/B/O	NT_004464	AC098692	74770295	3	RH67692	1	195.12					1	AC098692.3
S/G/Y/R/B/O	NT_004464	AC098692	74792841	3	RH12316	1	191.36					1	AC018404.5, AC098692.3
S/G/Y/R/B/O	NT_004464	AC098692	74794509	3	RH63946	1	187.68			1	216.70	1	AC018404.5, AC098692.3
S/G/Y/R/B/O	NT_004464	AC098692	74794542	3	RH25825	1	189.50					1	AC018404.5, AC098692.3
S/G/Y/R/B/O	NT_004464	AC098692	74795893	3	RH49907	1	190.59					1	AC018404.5, AC098692.3

NT_004464 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	All Accessions
S/G/Y/R/B/O	NT_004464	AC098692	74795893	3	SGC38103					1	225.80	1	AC018404.5, AC098692.3
S/G/Y/R/B/O	NT_004464	AC098692	74828031	3	RH92878	1	191.67					1	AC018404.5, AC026566.1, AC098692.3, AC119672.1
S/G/Y/R/B/O	NT_004464	AC119672	74830357	3
S/G/Y/R/B/O	NT_004464	AC093158	74951146	3	RH50288	1	190.30					1	AC093158.2
S/G/Y/R/B/O	NT_004464	AC093158	74951146	3	SGC31192					1	225.50	1	AC093158.2
S/G/Y/R/B/O	NT_004464	AC105271	75021974	3
S/G/Y/R/B/O	NT_004464	AC058795	75131820	1	RH102630	1	197.22					1	AC015897.3, AC019284.4, AC058795.3
S/G/Y/R/B/O	NT_004464	AC096950	75207782	3	RH92319	1	191.36					1	AC013664.2, AC015897.3, AC019284.4, AC096950.2
S/G/Y/R/B/O	NT_004464	AC009418	75290417	1	RH69010	1	197.22					1	AC009418.2
S/G/Y/R/B/O	NT_004464	AC009418	75290485	1	RH68052	1	197.43					1	AC009418.2
S/G/Y/R/B/O	NT_004464	AC009418	75290671	1	RH64760	1	189.50					1	AC009418.2
S/G/Y/R/B/O	NT_004464	AL359969	75298931	1
S/G/Y/R/B/O	NT_004464	AC091611	75372192	3	WI-3426					1	220.40	1	AC091611.4, AL359969.8, AL390740.4
S/G/Y/R/B/O	NT_004464	AL355573	75501838	1
S/G/Y/R/B/O	NT_004464	AC099786	75576965	3
S/G/Y/R/B/O	NT_004464	AC118550	75791478	3	RH64655	1	190.00					1	AC027384.2, AC073499.2, AC118550.2
S/G/Y/R/B/O	NT_004464	AC118550	75791547	3	RH67292	1	197.43					1	AC027384.2, AC073499.2, AC118550.2
S/G/Y/R/B/O	NT_004464	AC107627	75800411	3
S/G/Y/R/B/O	NT_004464	AC118990	75886428	3
S/G/Y/R/B/O	NT_004464	AC093156	75984745	3	SGC33741					1	217.10	1	AC093156.2
S/G/Y/R/B/O	NT_004464	AC093156	75984745	3	RH50148	1	192.17					1	AC093156.2
S/G/Y/R/B/O	NT_004464	AC093156	75984745	3	RH32932			1	5250.00			1	AC093156.2
S/G/Y/R/B/O	NT_004464	AC093156	75984895	3	RH70455	1	195.12					1	AC093156.2
S/G/Y/R/B/O	NT_004464	AC093156	75999864	3	D1S481					1	220.30	1	AC093156.2
S/G/Y/R/B/O	NT_004464	AC093156	75999864	3	RH42481	1	194.80					1	AC093156.2
S/G/Y/R/B/O	NT_004464	AL096829	76172749	3	RH64249	1	191.86			1	219.30	1	AL096829.17
S/G/Y/R/B/O	NT_004464	AL137803	76242971	3
S/G/Y/R/B/O	NT_004464	AL357314	76348532	3	WI-7105					1	219.20	1	AL357314.11, AL359206.3, AL592082.4
S/G/Y/R/B/O	NT_004464	AL357314	76348532	3	RH49744	1	193.62					1	AL357314.11, AL359206.3, AL592082.4
S/G/Y/R/B/O	NT_004464	AL357314	76348532	3	RH13918			1	4234.00			1	AL357314.11, AL359206.3, AL592082.4
S/G/Y/R/B/O	NT_004464	AL357314	76349009	3	RH17668	1	205.30					1	AL357314.11, AL359206.3, AL592082.4
S/G/Y/R/B/O	NT_004464	AL357314	76380306	3	RH104502	1	192.48					1	AC009337.4, AL357314.11, AL359206.3
S/G/Y/R/B/O	NT_004464	AL357314	76380615	3	RH17165	1	205.30					1	AC009337.4, AL357314.11, AL592082.4
S/G/Y/R/B/O	NT_004464	AL357314	76380622	3	RH63936	1	193.67					1	AC009337.4, AL357314.11, AL592082.4
S/G/Y/R/B/O	NT_004464	AL445464	76410252	3
S/G/Y/R/B/O	NT_004464	AC092813	76511349	3
S/G/Y/R/B/O	NT_004464	AL596217	76713002	3	RH103785	1	195.12					1	AC023917.2, AC079307.4, AC094023.1, AL596217.6
S/G/Y/R/B/O	NT_004464		-		RH17161	1	191.64					1	AC010986.4, AL161795.2, AL513284.12
S/G/Y/R/B/O	NT_004464		-		RH1356			1	3676.00			3	AL008721.1, AL358512.9, AL590559.3, Z99716.4
S/G/Y/R/B/O	NT_004464		-		RH44580	1	190.20					0	AC015897.3, AC019284.4
S/G/Y/R/B/O	NT_004464		-		RH29945			1	3607.00			1	AC024894.13, AL033530.1
S/G/Y/R/B/O	NT_004464		-		RH30679			1	3637.00			1	AC046169.1, AL391703.9
S/G/Y/R/B/O	NT_004464		-		RH31581			1	3676.00			1	AL358512.9
S/G/Y/R/B/O	NT_004464		-		RH32218			1	3637.00			1	AL139413.11
S/G/Y/R/B/O	NT_004464		-		RH32296			1	3669.00			1	AL500525.4
S/G/Y/R/B/O	NT_004464		-		RH33230			1	3662.00			1	AC046169.1, AL391703.9, AL391871.2
S/G/Y/R/B/O	NT_004464		-		RH38134			1	3622.00			1	AL358512.9
S/G/Y/R/B/O	NT_004464		-		RH9082			1	3501.00			1	AC008375.6, AC008733.8, AC009194.9, AC017110.5, AC073640.1
S/G/Y/R/B/O	NT_004464		-		RH50781	1	191.36			1	220.30	0	AC015897.3, AC019284.4
S/G/Y/R/B/O	NT_004464		-		RH64788	1	191.64					1	AC114487.2

NT_004464 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_004464		-		RH64807	1	191.64					1		AC104837.2, AL672168.4
S/G/Y/R/B/O	NT_004464		-		RH68355	1	191.33					1		AC010986.4, AL157407.11