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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_004350 NT_004321 NT_004547 NT_034374 NT_022058 NT_021917 NT_028054 NT_032967
NT_021937 NT_034375 NT_022041 NT_004873 NT_034376 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_034377 NT_030571 NT_004782 NT_028053 NT_034378
NT_004538 NT_034379 NT_034380 NT_004511 NT_004852 NT_032963 NT_032971 NT_032972
NT_004386 NT_032977 NT_004424 NT_032973 NT_029223 NT_029865 NT_031737 NT_004636
NT_034381 NT_032948 NT_034382 NT_004464 NT_034383 NT_034384 NT_004483 NT_032974
NT_004902 NT_034385 NT_026943 NT_034386 NT_029231 NT_034387 NT_004658 NT_004686
NT_034388 NT_021979 NT_034389 NT_034390 NT_034391 NT_030565 NT_034392 NT_034393
NT_028050 NT_030567 NT_034394 NT_021977 NT_034395 NT_029860 NT_019273 NT_034396
NT_031697 NT_004754 NT_032975 NT_022052 NT_034397 NT_022071 NT_004434 NT_034398
NT_034399 NT_034400 NT_034401 NT_034402 NT_034403 NT_032962 NT_034428 NT_021907
NT_004441 NT_030577 NT_004858 NT_004982 NT_026945 NT_004668 NT_034404 NT_034405
NT_029874 NT_034406 NT_004487 NT_021905 NT_004599 NT_034407 NT_004671 NT_004416
NT_029862 NT_034408 NT_034409 NT_034410 NT_034411 NT_032947 NT_029226 NT_021877
NT_031718 NT_034412 NT_034413 NT_004612 NT_034414 NT_034415 NT_021953 NT_004861
NT_004525 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433 NT_034416
NT_030561 NT_034417 NT_004836 NT_004771 NT_004734 NT_031700 NT_004536 NT_032964
NT_031730 NT_029870 NT_032969 NT_032968 NT_034418


  NT_028053
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_028053AL670471267212503RH50594192.73  191.701 AL670471.4, AL683889.14
S/G/Y/R/B/O NT_028053AL353622267971093RH102636195.57    1 AL353622.33, AL683889.14
S/G/Y/R/B/O NT_028053AL353622268506053RH9984195.57    1 AC025860.2, AL353622.33, AL683889.14
S/G/Y/R/B/O NT_028053AL353622268506143RH12617195.57    1 AC025860.2, AL353622.33, AL683889.14
S/G/Y/R/B/O NT_028053AL353622268506733RH10615195.40    1 AC025860.2
S/G/Y/R/B/O NT_028053AL353622268513213RH25981192.86    1 AC025860.2, AC027421.3, AL353622.33, AL683889.14
S/G/Y/R/B/O NT_028053AL353622268516043RH63931192.73  191.701 AC025860.2, AC027421.3, AL353622.33, AL683889.14
S/G/Y/R/B/O NT_028053AL353622268516533RH9974195.57    1 AC025860.2, AL353622.33, AL683889.14
S/G/Y/R/B/O NT_028053AL353622268933263RH65830188.92    1 AC025860.2, AL353622.33, AL683889.14
S/G/Y/R/B/O NT_028053AL353622268949663RH64792192.73    1 AC025860.2, AL353622.33, AL683889.14
S/G/Y/R/B/O NT_028053AL353354269320333RH11794195.50    1 AC025860.2, AC027421.3, AL353354.36
S/G/Y/R/B/O NT_028053AL353354269325073RH64556195.46    1 AC025860.2, AL353354.36
S/G/Y/R/B/O NT_028053AL353354269562273RH68263195.57    1 AC025860.2, AC027421.3, AL353354.36
S/G/Y/R/B/O NT_028053AL137792269822173RH104513195.57    1 AC025860.2, AL137792.11
S/G/Y/R/B/O NT_028053AL137792269854233RH68225187.83    1 AL137792.11
S/G/Y/R/B/O NT_028053AL137792269856433RH93431195.57    1 AL137792.11
S/G/Y/R/B/O NT_028053AL137792269856773RH25864188.92    1 AL137792.11
S/G/Y/R/B/O NT_028053AL137792270371633RH2532911271.52    2 AC013405.3, AL137792.11, AL358572.6, AP001992.4
S/G/Y/R/B/O NT_028053AL137792270373133RH2010  15958.00  2 AC013405.3, AL137792.11, AL358572.6, AP001992.4
S/G/Y/R/B/O NT_028053AL137792270376383RH5220811271.52  11371.602 AL137792.11, AL358572.6, AP001992.4
S/G/Y/R/B/O NT_028053AL137792270582783RH67549195.57    1 AL137792.11, AL358572.6
S/G/Y/R/B/O NT_028053AL137792270583243RH18216192.73    1 AL137792.11, AL358572.6
S/G/Y/R/B/O NT_028053AL512288271441543RH45813190.53    1 AL358572.6, AL512288.19
S/G/Y/R/B/O NT_028053AL512288271622773RH70748195.57    1 AC021817.2, AL358572.6, AL512288.19
S/G/Y/R/B/O NT_028053AL512288271864313RH45508190.73    1 AL512288.19
S/G/Y/R/B/O NT_028053AC026088272114471          
S/G/Y/R/B/O NT_028053AL109927272219221RH11541192.73    2 AL109927.31, AL109927.31
S/G/Y/R/B/O NT_028053AL109927272478971RH68976195.57    1 AL109927.31
S/G/Y/R/B/O NT_028053AL109927272479641RH64351190.63  191.901 AC026088.1, AL109927.31
S/G/Y/R/B/O NT_028053AL109927272531011RH11541192.73    2 AL109927.31, AL109927.31
S/G/Y/R/B/O NT_028053AL109927272876791RH63937192.73  191.701 AC021817.2, AC026088.1, AL109927.31
S/G/Y/R/B/O NT_028053AL109927272888011RH25167195.57    1 AC026088.1, AL109927.31
S/G/Y/R/B/O NT_028053AL020997273147783RH68405195.57    1 AL020997.1, AL109927.31
S/G/Y/R/B/O NT_028053AL020997273150343RH26461190.53    1 AC026088.1, AL020997.1, AL109927.31
S/G/Y/R/B/O NT_028053AL020997273157303RH50323192.86  191.701 AC026088.1, AL020997.1, AL109927.31
S/G/Y/R/B/O NT_028053AL020997273158853RH44993190.53    1 AC026088.1, AL020997.1, AL109927.31
S/G/Y/R/B/O NT_028053AL020997273159693RH70370190.53    1 AC026088.1, AL020997.1, AL109927.31
S/G/Y/R/B/O NT_028053AL020997273164613RH9845195.57    1 AC026088.1, AL020997.1, AL109927.31
S/G/Y/R/B/O NT_028053AL020997273166153RH64712190.53    1 AL020997.1, AL109927.31
S/G/Y/R/B/O NT_028053AL020997273651993RH92348195.57    1 AL020997.1
S/G/Y/R/B/O NT_028053AL020997273762853RH93638192.73    1 AL020997.1
S/G/Y/R/B/O NT_028053AL020997274141943RH66767192.86    1 AL020997.1
S/G/Y/R/B/O NT_028053AL445490274294423          
S/G/Y/R/B/O NT_028053AL031729275136983RH70828195.57    1 AL031729.16, AL357335.5
S/G/Y/R/B/O NT_028053AL031729275171103RH70829195.57    1 AL031729.16, AL357335.5
S/G/Y/R/B/O NT_028053AL031729275265243RH76752194.47    1 AL031729.16, AL357335.5
S/G/Y/R/B/O NT_028053AL031729275280163RH49281194.10    1 AL357335.5
S/G/Y/R/B/O NT_028053AL031729276046333RH67089195.57    1 AL031729.16
S/G/Y/R/B/O NT_028053AL161641276099931          
S/G/Y/R/B/O NT_028053AL663122278043563          


  NT_028053 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_028053AL096774278596833RH68756X164.19    2 AL096774.9
S/G/Y/R/B/O NT_028053AL096774278711193RH70930194.10    1 AL096774.9
S/G/Y/R/B/O NT_028053AL663123278961333RH64771192.73    1 AL663123.1
S/G/Y/R/B/O NT_028053AL663123278961633RH18257195.40    1 AL663123.1
S/G/Y/R/B/O NT_028053AL663123279116873RH12761195.50    1 AL663123.1
S/G/Y/R/B/O NT_028053AL663123279293623RH102946190.53    1 AL663123.1
S/G/Y/R/B/O NT_028053AL663123279570553RH44552192.73    1 AL663123.1
S/G/Y/R/B/O NT_028053AL663123279571453RH69371194.10    1 AL663123.1
S/G/Y/R/B/O NT_028053AL590640280128703RH63834190.53    1 AL590640.18
S/G/Y/R/B/O NT_028053AL590640280653263RH252337605.64    2 AC009365.9, AL590640.18
S/G/Y/R/B/O NT_028053AL137860281224731RH74957195.46    1 AL137860.19
S/G/Y/R/B/O NT_028053AL137860281652361RH76269193.17    1 AL137860.19
S/G/Y/R/B/O NT_028053AL137860281662321RH6959412344.36    1 AL137860.19
S/G/Y/R/B/O NT_028053AL137860281664841RH75183195.57    1 AL137860.19
S/G/Y/R/B/O NT_028053AL356390282605023RH102008190.53    1 AL356390.24, AL592304.1
S/G/Y/R/B/O NT_028053AL356390282962433RH49350190.63    1 AL356390.24
S/G/Y/R/B/O NT_028053AL356390283365803RH50568194.37    1 AC004873.1, AC004873.3, AL356390.24
S/G/Y/R/B/O NT_028053AL356390283365803SGC33625    197.301 AC004873.1, AC004873.3, AL356390.24
S/G/Y/R/B/O NT_028053AL356390283365803RH18219190.43    1 AC004873.1, AC004873.3, AL356390.24
S/G/Y/R/B/O NT_028053AL356390283539083RH93759192.73    1 AC004873.1, AC004873.3, AL356390.24
S/G/Y/R/B/O NT_028053AL356390283540823RH64779192.73    1 AC004873.1, AC004873.3, AL356390.24
S/G/Y/R/B/O NT_028053AC004873283749083RH75262192.97    1 AC004873.1, AC004873.3, AL034380.26
S/G/Y/R/B/O NT_028053AC004873283890303RH94302194.37    1 AC004873.1, AC004873.3, AL034380.26
S/G/Y/R/B/O NT_028053AC004873284013653RH79228192.73    1 AC004873.1, AC004873.3, AL034380.26
S/G/Y/R/B/O NT_028053AC004873284082233RH50313190.53  190.101 AC004873.1, AC004873.3, AL034380.26
S/G/Y/R/B/O NT_028053AC004873284101433RH10695194.37    1 AC004873.1, AC004873.3, AL034380.26
S/G/Y/R/B/O NT_028053AC004873284101753RH12522194.37    1 AC004873.1, AC004873.3, AL034380.26
S/G/Y/R/B/O NT_028053AC004873284107643RH16684193.48    1 AC004873.1, AC004873.3, AL034380.26
S/G/Y/R/B/O NT_028053AL034380284675213RH63927188.61    1 AL034380.26
S/G/Y/R/B/O NT_028053AL034380284675213WI-6306    196.701 AL034380.26
S/G/Y/R/B/O NT_028053AL034380284675213RH26587192.97    1 AL034380.26
S/G/Y/R/B/O NT_028053AL034380284675213RH36882188.61    1 AL034380.26
S/G/Y/R/B/O NT_028053AL034380285137353RH64723188.51    1 AL034380.26
S/G/Y/R/B/O NT_028053AL512408285466273RH26635194.16    1 AL512408.12
S/G/Y/R/B/O NT_028053AL512408285471123RH64206188.81  192.201 AL512408.12
S/G/Y/R/B/O NT_028053AL512408285713253RH46304188.61    1 AL512408.12
S/G/Y/R/B/O NT_028053AL512408285732673RH65351188.51    1 AL512408.12
S/G/Y/R/B/O NT_028053AL627082285892403          
S/G/Y/R/B/O NT_028053 - RH102025193.07    0  
S/G/Y/R/B/O NT_028053 - D1S511    190.100  
S/G/Y/R/B/O NT_028053 - RH102214194.68    1 AC022307.14, AC025388.2, AL109945.15, AL731812.3
S/G/Y/R/B/O NT_028053 - RH50083193.17  190.201 AL139160.3
S/G/Y/R/B/O NT_028053 - RH12032194.68    1 AC022307.14, AL109945.15
S/G/Y/R/B/O NT_028053 - TIGR-A004Z34    191.701 AL356489.14
S/G/Y/R/B/O NT_028053 - RH26339194.68    1 AC022307.14, AC025388.2, AL109945.15, AL731812.3
S/G/Y/R/B/O NT_028053 - RH27127190.53    1 AC022766.3, AL645729.14
S/G/Y/R/B/O NT_028053 - RH41796194.68    1 AC022307.14, AC025388.2, AL109945.15, AL731812.3
S/G/Y/R/B/O NT_028053 - RH48422194.68    0  
S/G/Y/R/B/O NT_028053 - RH49837193.17    0 AL109743.4, AL139224.8, AL627313.15
S/G/Y/R/B/O NT_028053 - RH64430192.55  191.701 AL136115.18, AL139160.3, AP000933.4, AP002344.1


  NT_028053 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_028053 - RH63792193.17    1 AC022307.14, AC025388.2, AL109945.15, AL731812.3
S/G/Y/R/B/O NT_028053 - RH50749190.53    1 AL360012.17, AL513497.20, AL714002.13, AL714002.13
S/G/Y/R/B/O NT_028053 - RH64460190.53    1 AL360012.17, AL513497.20, AL714002.13, AL714002.13
S/G/Y/R/B/O NT_028053 - RH64484193.07    1 AC022307.14, AL049795.21, AL121991.40
S/G/Y/R/B/O NT_028053 - RH64704193.27    1 AC023038.2, AC114489.1, AC114493.1, AL356478.3, AL356780.7
S/G/Y/R/B/O NT_028053 - RH64707194.68    1 AC025388.2, AL109945.15, AL356986.11, AL731812.3
S/G/Y/R/B/O NT_028053 - RH69076195.57    0  
S/G/Y/R/B/O NT_028053 - RH70250188.81    0 AL109743.4, AL139224.8, AL627313.15
S/G/Y/R/B/O NT_028053 - RH70820194.68    0 AC022307.14, AL121991.40
S/G/Y/R/B/O NT_028053 - RH77841190.53    1 AL360012.17, AL513497.20, AL714002.13
S/G/Y/R/B/O NT_028053 - RH77985194.68    1 AC022307.14, AL109945.15
S/G/Y/R/B/O NT_028053 - RH78056194.37    0  
S/G/Y/R/B/O NT_028053 - RH80765190.73    1 AC022307.14, AL109945.15
S/G/Y/R/B/O NT_028053 - RH94083192.34    0