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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_004350 NT_004321 NT_004547 NT_034374 NT_022058 NT_021917 NT_028054 NT_032967
NT_021937 NT_034375 NT_022041 NT_004873 NT_034376 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_034377 NT_030571 NT_004782 NT_028053 NT_034378
NT_004538 NT_034379 NT_034380 NT_004511 NT_004852 NT_032963 NT_032971 NT_032972
NT_004386 NT_032977 NT_004424 NT_032973 NT_029223 NT_029865 NT_031737 NT_004636
NT_034381 NT_032948 NT_034382 NT_004464 NT_034383 NT_034384 NT_004483 NT_032974
NT_004902 NT_034385 NT_026943 NT_034386 NT_029231 NT_034387 NT_004658 NT_004686
NT_034388 NT_021979 NT_034389 NT_034390 NT_034391 NT_030565 NT_034392 NT_034393
NT_028050 NT_030567 NT_034394 NT_021977 NT_034395 NT_029860 NT_019273 NT_034396
NT_031697 NT_004754 NT_032975 NT_022052 NT_034397 NT_022071 NT_004434 NT_034398
NT_034399 NT_034400 NT_034401 NT_034402 NT_034403 NT_032962 NT_034428 NT_021907
NT_004441 NT_030577 NT_004858 NT_004982 NT_026945 NT_004668 NT_034404 NT_034405
NT_029874 NT_034406 NT_004487 NT_021905 NT_004599 NT_034407 NT_004671 NT_004416
NT_029862 NT_034408 NT_034409 NT_034410 NT_034411 NT_032947 NT_029226 NT_021877
NT_031718 NT_034412 NT_034413 NT_004612 NT_034414 NT_034415 NT_021953 NT_004861
NT_004525 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433 NT_034416
NT_030561 NT_034417 NT_004836 NT_004771 NT_004734 NT_031700 NT_004536 NT_032964
NT_031730 NT_029870 NT_032969 NT_032968 NT_034418


  NT_004852
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004852AL606465393874393RH254611118.68    1 AL139015.6, AL606465.21
S/G/Y/R/B/O NT_004852AL606465393874683RH646641118.47    1 AL139015.6, AL606465.21
S/G/Y/R/B/O NT_004852AL606465394177133RH508741118.68    1 AC024619.12, AL139015.6, AL606465.21
S/G/Y/R/B/O NT_004852AL606465394177133WI-15142    1122.201 AC024619.12, AL139015.6, AL606465.21
S/G/Y/R/B/O NT_004852AL355477394528633          
S/G/Y/R/B/O NT_004852AL356055395160503          
S/G/Y/R/B/O NT_004852AL442071396113373          
S/G/Y/R/B/O NT_004852AL137853398128223RH158561141.46    1 AC024511.5, AL137853.12, AL713993.4
S/G/Y/R/B/O NT_004852AL365277398584753RH671671118.42    1 AC024511.5, AL365277.21, AL713993.4
S/G/Y/R/B/O NT_004852AL365277398689353RH701421119.51    1 AC024511.5, AL365277.21, AL713993.4
S/G/Y/R/B/O NT_004852AL365277398691003RH675561118.42    1 AC024511.5, AL365277.21, AL713993.4
S/G/Y/R/B/O NT_004852AL365277398691113RH643781132.64  1122.101 AC024511.5, AL365277.21, AL713993.4
S/G/Y/R/B/O NT_004852AL365277398697943RH256451118.99    1 AC024511.5, AC073835.2, AL365277.21, AL713993.4
S/G/Y/R/B/O NT_004852AL365277399055583RH931651119.20    3  
S/G/Y/R/B/O NT_004852AL365277399442213RH104541118.47    1 AC073835.2, AL365277.21, AL713993.4
S/G/Y/R/B/O NT_004852AC073835399564551          
S/G/Y/R/B/O NT_004852AL033526399860983RH931651119.20    3  
S/G/Y/R/B/O NT_004852AL033526400367183RH14201  12235.00  2 AC073835.2, AL033526.24, AL035404.20
S/G/Y/R/B/O NT_004852AL033526400367183RH1045221131.85    2 AC073835.2, AL033526.24, AL035404.20
S/G/Y/R/B/O NT_004852AL033526400375063RH927191119.20    2 AC073835.2, AL033526.24, AL035404.20
S/G/Y/R/B/O NT_004852AL035404400888273AFMB338WG5    1125.901 AL035404.20
S/G/Y/R/B/O NT_004852AL035404401187143RH14201  12235.00  2 AC073835.2, AL033526.24, AL035404.20
S/G/Y/R/B/O NT_004852AL035404401187143RH1045221131.85    2 AC073835.2, AL033526.24, AL035404.20
S/G/Y/R/B/O NT_004852AL035404401195023RH927191119.20    2 AC073835.2, AL033526.24, AL035404.20
S/G/Y/R/B/O NT_004852AL035404401740443RH782101118.78    1 AC067884.2, AL035404.20
S/G/Y/R/B/O NT_004852AL035404401742283RH638941119.30    1 AC067884.2, AL035404.20
S/G/Y/R/B/O NT_004852AL035404401742283WI-12211    1122.001 AC067884.2, AL035404.20
S/G/Y/R/B/O NT_004852AL035404401742303RH100591119.30    1 AC067884.2, AL035404.20
S/G/Y/R/B/O NT_004852AL035404401751383RH251961119.10    1 AC067884.2, AL035404.20
S/G/Y/R/B/O NT_004852AL035404401972883WI-4554    1122.401 AC067884.2, AL035404.20, AL354888.6
S/G/Y/R/B/O NT_004852AL049824402351633          
S/G/Y/R/B/O NT_004852AL033527402589973RH931651119.20    3  
S/G/Y/R/B/O NT_004852AL033527403363263RH639541119.30    1 AC025002.3, AL033527.26, AL354888.6
S/G/Y/R/B/O NT_004852AL033527403363263WI-12773    1122.401 AC025002.3, AL033527.26, AL354888.6
S/G/Y/R/B/O NT_004852AL033527403525743RH250121119.10    1 AL033527.26, AL354888.6
S/G/Y/R/B/O NT_004852AL033527403907043RH505431119.1012263.00  1 AL033527.26
S/G/Y/R/B/O NT_004852AL033527403907043WI-7196    1121.301 AL033527.26
S/G/Y/R/B/O NT_004852AL033527403907073RH365811119.20    1 AC025002.3, AL033527.26
S/G/Y/R/B/O NT_004852AL663070404649473RH809811119.05    1 AL663070.15
S/G/Y/R/B/O NT_004852AL512599405674691RH680171125.20    1 AC124780.1, AL512599.31
S/G/Y/R/B/O NT_004852AL512599405679831RH638201125.20  1138.701 AC124780.1, AL512599.31
S/G/Y/R/B/O NT_004852AL512599405679861RH102121121.03    1 AC124780.1, AL512599.31
S/G/Y/R/B/O NT_004852AL512599405691681RH258831139.72    1 AC124780.1, AL512599.31
S/G/Y/R/B/O NT_004852AL512599405987801WI-5252    1121.201 AC124780.1, AL512599.31
S/G/Y/R/B/O NT_004852AL512599406611921RH181161124.58    1 AC124780.1, AL512599.31
S/G/Y/R/B/O NT_004852AL512599406630031RH362341124.58    1 AC124780.1, AL512599.31
S/G/Y/R/B/O NT_004852AL512599406832441RH643131124.58    1 AC124780.1, AL512599.31
S/G/Y/R/B/O NT_004852AL512599406879711RH654421125.31    1 AC124780.1, AL512599.31
S/G/Y/R/B/O NT_004852AL512599406925641RH655271131.54    1 AC124780.1, AL512599.31
S/G/Y/R/B/O NT_004852AL356424406949543          


  NT_004852 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004852AL050341407397773WI-12261    1143.001 AL050341.18
S/G/Y/R/B/O NT_004852AL050341407397773RH501411132.49    1 AL050341.18
S/G/Y/R/B/O NT_004852AL050341407405143RH173111125.31    1 AL050341.18
S/G/Y/R/B/O NT_004852AL050341407410683RH638051124.58    1 AL050341.18
S/G/Y/R/B/O NT_004852AL050341407410683WI-11868    1112.201 AL050341.18
S/G/Y/R/B/O NT_004852AL050341407414383RH672121125.31    1 AL050341.18
S/G/Y/R/B/O NT_004852AL050341407499683RH493481122.9512263.00  1 AL050341.18
S/G/Y/R/B/O NT_004852AL050341407521713RH925611125.31    1 AL050341.18
S/G/Y/R/B/O NT_004852AL050341407571923RH766761130.60    1 AL050341.18
S/G/Y/R/B/O NT_004852AL050341407574233RH938041125.31    1 AL050341.18
S/G/Y/R/B/O NT_004852AL050341407579603RH465961139.51    1 AL050341.18
S/G/Y/R/B/O NT_004852AL050341407945723RH641981122.9512272.00  1 AL050341.18
S/G/Y/R/B/O NT_004852AL050341407945723SGC34567    1121.401 AL050341.18
S/G/Y/R/B/O NT_004852AL050341407946673RH251181125.31    1 AL050341.18
S/G/Y/R/B/O NT_004852AL050341407947283RH645751124.58    1 AL050341.18
S/G/Y/R/B/O NT_004852AL050341408012993RH1030361131.08    1 AC025994.2, AL050341.18
S/G/Y/R/B/O NT_004852AL050341408014383RH643021125.3112272.00  1 AC025994.2, AL050341.18
S/G/Y/R/B/O NT_004852AL050341408014383SGC35672    1121.401 AC025994.2, AL050341.18
S/G/Y/R/B/O NT_004852AL050341408015213RH692071124.58    1 AC025994.2, AL050341.18
S/G/Y/R/B/O NT_004852AL050341408130133RH642401124.58  1142.801 AC025994.2, AL050341.18
S/G/Y/R/B/O NT_004852AL050341408130973RH675191125.31    1 AC025994.2, AL050341.18
S/G/Y/R/B/O NT_004852AL031985408909523RH502131125.3612279.001142.601 AC025994.2, AL031985.10
S/G/Y/R/B/O NT_004852AL031985408911453RH166061125.31    1 AC025994.2, AL031985.10
S/G/Y/R/B/O NT_004852AL031985409660043RH266341124.58    1 AL031985.10, AL603839.9
S/G/Y/R/B/O NT_004852AL031985409672763RH100241124.68    1 AL031985.10, AL603839.9
S/G/Y/R/B/O NT_004852AL031985409673313RH645891134.37    1 AL031985.10, AL603839.9
S/G/Y/R/B/O NT_004852AL603839410165723RH1020061125.31    1 AL603839.9
S/G/Y/R/B/O NT_004852AL356379410616013RH676811125.20    2 AC079169.32, AL356379.10
S/G/Y/R/B/O NT_004852AL031289411073663RH31564  12279.00  1 AL031289.1
S/G/Y/R/B/O NT_004852AL031289411214503RH254411125.31    1 AL031289.1
S/G/Y/R/B/O NT_004852AL031289411341003RH38075  12303.00  1 AL031289.1
S/G/Y/R/B/O NT_004852AL031289411906723RH644921135.69    1 AL031289.1
S/G/Y/R/B/O NT_004852AL031289412068313RH464471121.34    1 AL031289.1
S/G/Y/R/B/O NT_004852AL354914412372483RH497691125.3112303.00  1 AL354914.9
S/G/Y/R/B/O NT_004852AL354914412372483SGC34312    1121.201 AL354914.9
S/G/Y/R/B/O NT_004852AL354914412477303RH644571124.58    1 AL354914.9
S/G/Y/R/B/O NT_004852AL354914412477303WI-16819    1121.401 AL354914.9
S/G/Y/R/B/O NT_004852AC119677412705141RH506991125.31    1 AC119677.1
S/G/Y/R/B/O NT_004852AC119677412705141TIGR-A003N32    1112.301 AC119677.1
S/G/Y/R/B/O NT_004852AC119677412720511RH452741121.34    1 AC119677.1
S/G/Y/R/B/O NT_004852AC119677413403621RH642331124.58  1139.501 AC119677.1
S/G/Y/R/B/O NT_004852AL391730415115701WI-8986    139.701 AL391730.13
S/G/Y/R/B/O NT_004852AL391730415119831RH181001121.24    1 AL391730.13
S/G/Y/R/B/O NT_004852AL391730415123241RH468861131.64    1 AL391730.13
S/G/Y/R/B/O NT_004852AL391730415155511RH991631125.31    1 AL391730.13
S/G/Y/R/B/O NT_004852AL391730415272041RH707181125.31    1 AL391730.13
S/G/Y/R/B/O NT_004852AL391730415272071RH783711124.58    1 AL391730.13
S/G/Y/R/B/O NT_004852AL391730415272321SGC32278    1121.401 AL391730.13
S/G/Y/R/B/O NT_004852AL110502415793313RH983521125.31    1 AL110502.1
S/G/Y/R/B/O NT_004852AL110502416089823RH487701121.34    1 AL110502.1


  NT_004852 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004852AL110502416305713SGC44348    1140.501 AL110502.1
S/G/Y/R/B/O NT_004852AL110502416305713RH507611132.17    1 AL110502.1
S/G/Y/R/B/O NT_004852AL110502416371573RH115531124.58    1 AL110502.1, AL162262.9
S/G/Y/R/B/O NT_004852AL606484416668853RH799521141.56    1 AL162262.9, AL606484.9, AL663046.4
S/G/Y/R/B/O NT_004852AC093151417828851CHLC.GATA65H06    1137.901 AC093151.2
S/G/Y/R/B/O NT_004852AL445933419721283RH177271125.15    1 AL136127.6, AL354974.3, AL445933.32
S/G/Y/R/B/O NT_004852AL445933419999473RH119531125.31    1 AC015862.3, AL354974.3, AL445933.32
S/G/Y/R/B/O NT_004852AL445933420002743RH254821124.75    1 AC015862.3, AC015862.3, AL136127.6, AL354974.3, AL445933.32
S/G/Y/R/B/O NT_004852AL445933420004293RH915871124.58    1 AC015862.3, AC015862.3, AL136127.6, AL354974.3, AL445933.32
S/G/Y/R/B/O NT_004852AL445933420010503RH647131133.74    1 AL136127.6, AL354974.3, AL445933.32
S/G/Y/R/B/O NT_004852AC119676422173071AFMA289YD1    1142.301 AC119676.1
S/G/Y/R/B/O NT_004852AL451006422848763RH492861125.3112286.00  1 AC013579.4, AL451006.6
S/G/Y/R/B/O NT_004852AL356455423411743RH693441125.31    1 AC013579.4, AL356455.8
S/G/Y/R/B/O NT_004852AC105268423636553RH1280  12286.00  1 AC013579.4, AC105268.2
S/G/Y/R/B/O NT_004852AC105268423636603RH644881137.20    1 AC013579.4, AC025921.1, AC105268.2
S/G/Y/R/B/O NT_004852AC105268423701183RH644331125.15    1 AC105268.2
S/G/Y/R/B/O NT_004852AC105268423701183SGC33246    1121.301 AC105268.2
S/G/Y/R/B/O NT_004852AC105268424948913WI-11150    1142.201 AC008022.2, AC105268.2
S/G/Y/R/B/O NT_004852AL158216425363553RH1791810259.25    2 AL512654.9, AL591702.1
S/G/Y/R/B/O NT_004852AL158216425410443D1S463    1121.401 AC008022.2, AL158216.16
S/G/Y/R/B/O NT_004852AC114492426496073RH706061125.31    1 AC114492.2
S/G/Y/R/B/O NT_004852AC114492426566723RH8318  12340.00  1 AC053509.3, AC114492.2
S/G/Y/R/B/O NT_004852AC114492426566723RH503401130.87  1144.401 AC053509.3, AC114492.2
S/G/Y/R/B/O NT_004852AC114492426567963RH692081126.44    1 AC053509.3, AC114492.2
S/G/Y/R/B/O NT_004852AC114492426705683RH473611131.54    1 AC114492.2, AL359754.6
S/G/Y/R/B/O NT_004852AC114492426733793RH920101126.44    1 AC053509.3, AC114492.2, AL359754.6
S/G/Y/R/B/O NT_004852AC096540427590351          
S/G/Y/R/B/O NT_004852 - RH1045631124.58    0  
S/G/Y/R/B/O NT_004852 - RH7982  12267.00  1 AL136373.21, AL357392.5
S/G/Y/R/B/O NT_004852 - WI-10754    1144.100 AL513331.15
S/G/Y/R/B/O NT_004852 - RH175781125.97    0 AL355519.8, AL583862.32
S/G/Y/R/B/O NT_004852 - RH363721118.47    0  
S/G/Y/R/B/O NT_004852 - RH930601125.97    0 AC005043.2, AL035417.15