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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_004350 NT_004321 NT_004547 NT_034374 NT_022058 NT_021917 NT_028054 NT_032967
NT_021937 NT_034375 NT_022041 NT_004873 NT_034376 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_034377 NT_030571 NT_004782 NT_028053 NT_034378
NT_004538 NT_034379 NT_034380 NT_004511 NT_004852 NT_032963 NT_032971 NT_032972
NT_004386 NT_032977 NT_004424 NT_032973 NT_029223 NT_029865 NT_031737 NT_004636
NT_034381 NT_032948 NT_034382 NT_004464 NT_034383 NT_034384 NT_004483 NT_032974
NT_004902 NT_034385 NT_026943 NT_034386 NT_029231 NT_034387 NT_004658 NT_004686
NT_034388 NT_021979 NT_034389 NT_034390 NT_034391 NT_030565 NT_034392 NT_034393
NT_028050 NT_030567 NT_034394 NT_021977 NT_034395 NT_029860 NT_019273 NT_034396
NT_031697 NT_004754 NT_032975 NT_022052 NT_034397 NT_022071 NT_004434 NT_034398
NT_034399 NT_034400 NT_034401 NT_034402 NT_034403 NT_032962 NT_034428 NT_021907
NT_004441 NT_030577 NT_004858 NT_004982 NT_026945 NT_004668 NT_034404 NT_034405
NT_029874 NT_034406 NT_004487 NT_021905 NT_004599 NT_034407 NT_004671 NT_004416
NT_029862 NT_034408 NT_034409 NT_034410 NT_034411 NT_032947 NT_029226 NT_021877
NT_031718 NT_034412 NT_034413 NT_004612 NT_034414 NT_034415 NT_021953 NT_004861
NT_004525 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433 NT_034416
NT_030561 NT_034417 NT_004836 NT_004771 NT_004734 NT_031700 NT_004536 NT_032964
NT_031730 NT_029870 NT_032969 NT_032968 NT_034418


  NT_021953
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_021953AC0970602176062073          
S/G/Y/R/B/O NT_021953AC0928082177978541RH30711  18534.00  1 AC027383.2, AC092808.1
S/G/Y/R/B/O NT_021953AL3600932179517521RH362761707.23    1 AL360093.9
S/G/Y/R/B/O NT_021953AL3600932179614291RH1026831707.23    1 AL360093.9
S/G/Y/R/B/O NT_021953AC0966422180099863          
S/G/Y/R/B/O NT_021953AL5132832182413583CHLC.GATA4H09.132    1849.001 AL358973.6
S/G/Y/R/B/O NT_021953AL3563642182866253          
S/G/Y/R/B/O NT_021953AC0966432183872593          
S/G/Y/R/B/O NT_021953AC0935622186806441RH360161707.33    1 AC093562.1
S/G/Y/R/B/O NT_021953AC0935622186807011RH761241707.33    1 AC093562.1
S/G/Y/R/B/O NT_021953AC0935622186811951RH359401707.33    1 AC093562.1
S/G/Y/R/B/O NT_021953AC0935622186813211RH502161707.23  1865.801 AC093562.1
S/G/Y/R/B/O NT_021953AC0935622186837571RH645801707.33    1 AC093562.1
S/G/Y/R/B/O NT_021953AC0935622186838621RH118811707.33    1 AC093562.1
S/G/Y/R/B/O NT_021953AC0935622186847191RH184311707.33    1 AC093562.1
S/G/Y/R/B/O NT_021953AL3600082187145163          
S/G/Y/R/B/O NT_021953AC1035902187380733RH14135  18589.00  1 AC026071.2, AC103590.2
S/G/Y/R/B/O NT_021953AC1035902187380743RH506811707.33    1 AC026071.2, AC103590.2
S/G/Y/R/B/O NT_021953AC1035902187380743WI-19181    1849.001 AC026071.2, AC103590.2
S/G/Y/R/B/O NT_021953AC1035902187380783RH1218  18585.00  1 AC026071.2, AC103590.2
S/G/Y/R/B/O NT_021953AC1035902187381893RH708351707.33    1 AC026071.2, AC103590.2
S/G/Y/R/B/O NT_021953AC1035902188270203RH659861705.83    1 AC026071.2, AC103590.2
S/G/Y/R/B/O NT_021953AC1035902189170953RH644511705.9318761.00  1 AC012440.2, AC103590.2, AL445435.11
S/G/Y/R/B/O NT_021953AC1035902189170953SGC31919    1849.001 AC012440.2, AC103590.2, AL445435.11
S/G/Y/R/B/O NT_021953AC1035902189172353RH359831707.33    1 AC012440.2, AC103590.2, AL445435.11
S/G/Y/R/B/O NT_021953AC1035902189172923RH74511  18746.00  1 AC012440.2, AC103590.2, AL445435.11
S/G/Y/R/B/O NT_021953AC1035902189177653RH692831707.33    1 AC012440.2, AC103590.2, AL445435.11
S/G/Y/R/B/O NT_021953AC1035902189195983RH74525  18626.00  1 AC012440.2, AC103590.2, AL445435.11
S/G/Y/R/B/O NT_021953AC1035902189199423RH161471707.33    1 AC012440.2, AC103590.2, AL445435.11
S/G/Y/R/B/O NT_021953AC1035902189199593RH499101706.42  1872.601 AC012440.2, AC103590.2, AL445435.11
S/G/Y/R/B/O NT_021953AC1035902189226693RH270491707.33    1 AC012440.2, AC103590.2, AL445435.11
S/G/Y/R/B/O NT_021953AL4454352189340563RH498521707.03  1865.701 AC012440.2, AL445435.11
S/G/Y/R/B/O NT_021953AL4454352189917023RH1917  18604.00  1 AL445435.11
S/G/Y/R/B/O NT_021953AL4454352190092013RH711311707.33    1 AL445435.11
S/G/Y/R/B/O NT_021953AL4454352190180973RH703161707.33    1 AL445435.11
S/G/Y/R/B/O NT_021953AL4510812191332573RH492491707.23    1 AL451081.5
S/G/Y/R/B/O NT_021953AC0966442191748993AFMA152ZD1    1872.201 AC096644.2
S/G/Y/R/B/O NT_021953AC0966402192876851          
S/G/Y/R/B/O NT_021953AC0163142192965011          
S/G/Y/R/B/O NT_021953AL5924062194320063RH711291706.4218623.00  1 AC091574.2
S/G/Y/R/B/O NT_021953AL5924062194686663RH710481706.31  1874.301 AC025710.4, AC091566.3, AL592406.4
S/G/Y/R/B/O NT_021953AL5924062194687003RH14291  18631.00  1 AC025710.4, AC091566.3, AL592406.4
S/G/Y/R/B/O NT_021953AL5924062194688333RH254591706.33    1 AC025710.4, AC091566.3, AL592406.4
S/G/Y/R/B/O NT_021953AL3593532195154503          
S/G/Y/R/B/O NT_021953AL6067262195541733RH117891706.23    1 AL606726.8
S/G/Y/R/B/O NT_021953AL4454232195838323RH500801706.31  1867.001 AL445423.13
S/G/Y/R/B/O NT_021953AL4454232195839653RH167341707.33    1 AL445423.13
S/G/Y/R/B/O NT_021953AL4454232195984753RH711031706.4218635.00  1 AL445423.13
S/G/Y/R/B/O NT_021953AL4454232195984753RH711071707.3318635.00  1 AL445423.13
S/G/Y/R/B/O NT_021953AL4454232196545163RH506501706.33  1874.301 AL445423.13


  NT_021953 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_021953AL4454232197308343RH492831707.33    1 AL445423.13, AL603862.4
S/G/Y/R/B/O NT_021953AC1184682197358433          
S/G/Y/R/B/O NT_021953AL4454662197488183          
S/G/Y/R/B/O NT_021953AL3598332199115813          
S/G/Y/R/B/O NT_021953AL4454702201190443RH485771711.41    1 AL445470.5, AL662928.4
S/G/Y/R/B/O NT_021953AL6629282201197073          
S/G/Y/R/B/O NT_021953AL5911792202062751          
S/G/Y/R/B/O NT_021953AL3600132203230273RH1041371710.17    1 AL360013.8
S/G/Y/R/B/O NT_021953AL3600132203929363RH492581710.27    1 AL360013.8
S/G/Y/R/B/O NT_021953AL3567882204237663          
S/G/Y/R/B/O NT_021953AL5909662204689803RH695681708.93    1 AL590966.10
S/G/Y/R/B/O NT_021953AL5909662204692123RH458901710.27    1 AL590966.10
S/G/Y/R/B/O NT_021953AL5909662204695623RH710621711.98    1 AL590966.10
S/G/Y/R/B/O NT_021953AL5909662204695623WI-16074    1902.401 AL590966.10
S/G/Y/R/B/O NT_021953AL5924832206105963          
S/G/Y/R/B/O NT_021953AC0927652207502913RH30712  18729.00  1 AL391061.8
S/G/Y/R/B/O NT_021953AL6064932208854343          
S/G/Y/R/B/O NT_021953AL3561082208920433          
S/G/Y/R/B/O NT_021953AL1581712210931183WI-3259    1873.301 AL158171.10
S/G/Y/R/B/O NT_021953AL5133632211013903          
S/G/Y/R/B/O NT_021953AL5133142212088633          
S/G/Y/R/B/O NT_021953AL5921482213258843RH41761  18724.00  1 AL592148.7
S/G/Y/R/B/O NT_021953AL5921482213258903RH789131710.87    1 AL592148.7
S/G/Y/R/B/O NT_021953AL5921482213572423RH938911710.87    1 AC026068.5, AL590088.6, AL592148.7
S/G/Y/R/B/O NT_021953AL5921482214330643RH122511711.41    1 AC026068.5, AL590088.6, AL592148.7
S/G/Y/R/B/O NT_021953AL5921482214337003RH501491710.17    1 AC026068.5, AL590088.6, AL592148.7
S/G/Y/R/B/O NT_021953AL5921482214337003SGC34788    1897.101 AC026068.5, AL590088.6, AL592148.7
S/G/Y/R/B/O NT_021953AL5921482214337003RH162141709.86    1 AC026068.5, AL590088.6, AL592148.7
S/G/Y/R/B/O NT_021953AL5921482214346533RH459241711.02    1 AC026068.5, AL590088.6, AL592148.7
S/G/Y/R/B/O NT_021953AL5921482214352093RH639221710.24  1869.501 AC026068.5, AL590088.6
S/G/Y/R/B/O NT_021953AL5921482214352663RH170911710.87    1 AC026068.5, AL590088.6, AL592148.7
S/G/Y/R/B/O NT_021953AL5921482214352803RH369531710.45    1 AC026068.5, AL590088.6, AL592148.7
S/G/Y/R/B/O NT_021953AL3921722214786733RH750681711.20    1 AL392172.9
S/G/Y/R/B/O NT_021953AL3921722214987793RH1021211709.86    1 AL392172.9
S/G/Y/R/B/O NT_021953AL3921722215022633RH937621710.87    1 AL392172.9
S/G/Y/R/B/O NT_021953AL3921722215023103RH502551711.20  1873.501 AL392172.9
S/G/Y/R/B/O NT_021953AL3921722215023413RH800181712.26    1 AL392172.9
S/G/Y/R/B/O NT_021953AL3921722215357133D1S469    1890.101 AL392172.9
S/G/Y/R/B/O NT_021953AL3921722216044933RH127971710.87    1 AL392172.9
S/G/Y/R/B/O NT_021953AL3921722216045403RH264851710.87    1 AL392172.9
S/G/Y/R/B/O NT_021953AL5135442216509373          
S/G/Y/R/B/O NT_021953AC0931522217731903RH983281710.87    1 AC021194.3, AC093152.2
S/G/Y/R/B/O NT_021953AC0211942218137541          
S/G/Y/R/B/O NT_021953 - RH1045471707.33    0  
S/G/Y/R/B/O NT_021953 - RH30713  18719.00  0  
S/G/Y/R/B/O NT_021953 - RH176511710.87    0  
S/G/Y/R/B/O NT_021953 - RH35077  18714.00  0  
S/G/Y/R/B/O NT_021953 - RH22931711.41    0  
S/G/Y/R/B/O NT_021953 - RH706551707.33    0  
S/G/Y/R/B/O NT_021953 - RH755131705.80    0  


  NT_021953 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_021953 - RH756081711.41    0  
S/G/Y/R/B/O NT_021953 - RH934101705.18    0  
S/G/Y/R/B/O NT_021953 - RH982271711.41    0